Wall clock time and date at job start Thu Apr 9 2020 12:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47193 * 2 1 4 4 C 1.50698 * 109.47137 * 239.99414 * 2 1 3 5 5 H 1.08002 * 120.00051 * 245.59658 * 4 2 1 6 6 C 1.37877 * 119.99651 * 65.60079 * 4 2 1 7 7 N 1.31513 * 119.99712 * 196.94977 * 6 4 2 8 8 Si 1.86797 * 120.00198 * 17.22259 * 6 4 2 9 9 H 1.48503 * 109.46867 * 179.72711 * 8 6 4 10 10 H 1.48500 * 109.47059 * 299.72306 * 8 6 4 11 11 H 1.48503 * 109.47180 * 59.72585 * 8 6 4 12 12 N 1.46506 * 109.47066 * 119.99460 * 2 1 3 13 13 C 1.46498 * 119.99655 * 60.00059 * 12 2 1 14 14 C 1.34776 * 120.00214 * 240.00054 * 12 2 1 15 15 O 1.21579 * 119.99611 * 359.97438 * 14 12 2 16 16 N 1.34779 * 119.99817 * 180.02562 * 14 12 2 17 17 C 1.39536 * 119.99580 * 184.76443 * 16 14 12 18 18 C 1.39403 * 120.85906 * 324.53130 * 17 16 14 19 19 C 1.37948 * 119.06997 * 179.75139 * 18 17 16 20 20 N 1.31967 * 120.83785 * 0.53640 * 19 18 17 21 21 C 1.31973 * 121.89528 * 359.71764 * 20 19 18 22 22 C 1.37936 * 120.83894 * 0.02562 * 21 20 19 23 23 H 1.09003 * 109.46850 * 305.80768 * 1 2 3 24 24 H 1.08999 * 109.47282 * 65.80485 * 1 2 3 25 25 H 1.08999 * 109.47163 * 185.80886 * 1 2 3 26 26 H 0.97005 * 120.00161 * 354.86604 * 7 6 4 27 27 H 1.08999 * 109.47141 * 90.00084 * 13 12 2 28 28 H 1.09005 * 109.46923 * 209.99897 * 13 12 2 29 29 H 1.09000 * 109.47269 * 329.99828 * 13 12 2 30 30 H 0.96996 * 120.00309 * 4.75834 * 16 14 12 31 31 H 1.07993 * 120.46576 * 359.97438 * 18 17 16 32 32 H 1.07995 * 119.57857 * 180.25377 * 19 18 17 33 33 H 1.08003 * 119.57804 * 180.02562 * 21 20 19 34 34 H 1.08006 * 120.46462 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5767 -1.6383 -1.1338 6 6 1.7970 -0.1761 -2.4794 7 7 1.9264 -0.9273 -3.5510 8 14 1.3020 1.6170 -2.6499 9 1 1.1156 1.9446 -4.0863 10 1 0.0302 1.8510 -1.9198 11 1 2.3665 2.4809 -2.0792 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4282 14 6 2.7932 -0.0355 2.0834 15 8 3.0872 1.1283 1.8907 16 7 3.2428 -0.6710 3.1837 17 6 3.9611 0.0327 4.1511 18 6 4.8355 1.0561 3.7888 19 6 5.5231 1.7311 4.7760 20 7 5.3691 1.4115 6.0471 21 6 4.5549 0.4458 6.4296 22 6 3.8273 -0.2735 5.5045 23 1 -0.3633 0.6013 0.8335 24 1 -0.3634 0.4212 -0.9374 25 1 -0.3633 -1.0224 0.1040 26 1 2.2588 -1.8350 -3.4699 27 1 2.4157 -2.7376 0.9719 28 1 1.6237 -2.2850 2.5004 29 1 0.6904 -2.3001 0.9848 30 1 3.0670 -1.6174 3.3030 31 1 4.9700 1.3194 2.7501 32 1 6.1995 2.5281 4.5049 33 1 4.4572 0.2158 7.4803 34 1 3.1631 -1.0629 5.8242 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176525930.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:26 Heat of formation + Delta-G solvation = 20.435267 kcal Electronic energy + Delta-G solvation = -18050.484525 eV Core-core repulsion = 15177.120312 eV Total energy + Delta-G solvation = -2873.364213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.70498 -39.25187 -36.04549 -34.90899 -32.92262 -31.15242 -30.96483 -29.53202 -26.50084 -24.84587 -23.69935 -23.31523 -21.22750 -19.38705 -18.23862 -17.63433 -17.11763 -16.02344 -15.81540 -15.38442 -14.99917 -14.25366 -13.87631 -13.79552 -13.52720 -13.36779 -12.92450 -12.80174 -12.23863 -11.84615 -11.75114 -11.60849 -11.42089 -10.72617 -10.52846 -10.09145 -9.85015 -9.79921 -9.33551 -9.14404 -9.06971 -8.57473 -8.38921 -7.87620 -6.55227 -4.20313 1.18998 1.32786 2.87538 3.34095 3.45297 3.48161 3.58357 3.94607 4.20079 4.40607 4.51443 4.85692 5.04026 5.15599 5.24358 5.33131 5.50171 5.75395 5.77327 5.90954 6.00245 6.16894 6.28134 6.34295 6.47820 6.50877 6.73661 6.87543 6.91209 7.27072 7.42857 7.79887 8.04989 8.25000 8.30148 8.72989 8.92331 9.48438 10.82711 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.036086 B = 0.005628 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.740390 B = 4974.233581 C = 5334.068708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.248 3.752 3 H 0.057 0.943 4 C -0.612 4.612 5 H 0.060 0.940 6 C 0.037 3.963 7 N -0.900 5.900 8 Si 1.040 2.960 9 H -0.283 1.283 10 H -0.273 1.273 11 H -0.278 1.278 12 N -0.596 5.596 13 C 0.086 3.914 14 C 0.698 3.302 15 O -0.577 6.577 16 N -0.691 5.691 17 C 0.220 3.780 18 C -0.174 4.174 19 C 0.112 3.888 20 N -0.507 5.507 21 C 0.112 3.888 22 C -0.211 4.211 23 H 0.027 0.973 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.268 0.732 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.407 0.593 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.255 -1.523 15.749 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.146 3.854 3 H 0.075 0.925 4 C -0.650 4.650 5 H 0.078 0.922 6 C -0.169 4.169 7 N -0.533 5.533 8 Si 0.868 3.132 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.204 1.204 12 N -0.329 5.329 13 C -0.058 4.058 14 C 0.399 3.601 15 O -0.454 6.454 16 N -0.340 5.340 17 C 0.114 3.886 18 C -0.197 4.197 19 C -0.044 4.044 20 N -0.218 5.218 21 C -0.045 4.045 22 C -0.235 4.235 23 H 0.046 0.954 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.244 0.756 31 H 0.171 0.829 32 H 0.174 0.826 33 H 0.172 0.828 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.380 0.891 14.972 15.061 hybrid contribution -0.172 -2.442 0.461 2.491 sum 1.208 -1.551 15.433 15.558 Atomic orbital electron populations 1.22543 0.98585 1.00367 1.00571 1.19189 0.90291 0.94559 0.81320 0.92489 1.22161 1.41321 1.10572 0.90980 0.92167 1.25683 0.94530 1.04925 0.91781 1.70881 1.41073 1.10071 1.31286 0.84118 0.77491 0.75364 0.76264 1.20882 1.19925 1.20383 1.47323 1.50612 1.11725 1.23282 1.21549 1.02444 0.83023 0.98758 1.15953 0.79683 0.84981 0.79443 1.90872 1.62598 1.15606 1.76360 1.42877 1.57264 1.12929 1.20938 1.17837 0.89917 0.92965 0.87859 1.22423 0.96124 0.97995 1.03114 1.22647 0.96650 0.97549 0.87521 1.67659 1.18770 1.16060 1.19331 1.22463 0.91615 0.90928 0.99519 1.21875 1.04816 1.05070 0.91710 0.95425 0.91335 0.93341 0.92212 0.92906 0.93333 0.90171 0.75596 0.82926 0.82633 0.82815 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.95 37.16 0.33 -3.09 16 2 C 0.25 5.87 2.22 -69.08 -0.15 5.71 16 3 H 0.06 1.48 5.56 -51.93 -0.29 1.19 16 4 C -0.61 -16.49 8.68 -34.44 -0.30 -16.79 16 5 H 0.06 1.73 7.75 -52.49 -0.41 1.32 16 6 C 0.04 1.03 5.30 -17.82 -0.09 0.94 16 7 N -0.90 -26.70 13.70 55.43 0.76 -25.94 16 8 Si 1.04 24.92 26.29 -169.99 -4.47 20.45 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.27 -5.98 5.73 56.52 0.32 -5.66 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.60 -11.99 2.75 -181.01 -0.50 -12.49 16 13 C 0.09 1.34 9.35 59.85 0.56 1.90 16 14 C 0.70 13.86 8.14 -86.92 -0.71 13.15 16 15 O -0.58 -13.43 13.19 5.30 0.07 -13.36 16 16 N -0.69 -10.47 5.18 -14.07 -0.07 -10.54 16 17 C 0.22 3.24 6.33 -83.49 -0.53 2.71 16 18 C -0.17 -2.72 8.77 -39.25 -0.34 -3.07 16 19 C 0.11 1.54 11.17 -17.60 -0.20 1.35 16 20 N -0.51 -6.95 10.36 -13.34 -0.14 -7.09 16 21 C 0.11 1.30 11.17 -17.60 -0.20 1.10 16 22 C -0.21 -2.47 10.06 -39.26 -0.39 -2.87 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.07 1.50 4.84 -51.93 -0.25 1.25 16 25 H 0.05 0.94 6.45 -51.93 -0.33 0.61 16 26 H 0.27 7.89 8.73 -40.82 -0.36 7.53 16 27 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 28 H 0.05 0.55 6.44 -51.93 -0.33 0.22 16 29 H 0.08 1.25 6.33 -51.93 -0.33 0.93 16 30 H 0.41 4.82 6.62 -40.82 -0.27 4.55 16 31 H 0.15 2.71 6.36 -52.49 -0.33 2.37 16 32 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 281.03 15.07 4.24 4.24 Total: -1.00 -32.54 281.03 -6.03 -38.57 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -3.89 Total: 5.13 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.02 Total: 1.04 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.05 Total: -56.06 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.07 Total: -13.36 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -4.47 Total: 20.45 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.54 -6.03 -38.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176525930.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.002 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds