Wall clock time and date at job start Thu Apr 9 2020 12:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47193 * 2 1 4 4 C 1.50698 * 109.47137 * 239.99414 * 2 1 3 5 5 H 1.08002 * 120.00051 * 245.59658 * 4 2 1 6 6 C 1.37877 * 119.99651 * 65.60079 * 4 2 1 7 7 N 1.31513 * 119.99712 * 196.94977 * 6 4 2 8 8 Si 1.86797 * 120.00198 * 17.22259 * 6 4 2 9 9 H 1.48503 * 109.46867 * 179.72711 * 8 6 4 10 10 H 1.48500 * 109.47059 * 299.72306 * 8 6 4 11 11 H 1.48503 * 109.47180 * 59.72585 * 8 6 4 12 12 N 1.46506 * 109.47066 * 119.99460 * 2 1 3 13 13 C 1.46498 * 119.99655 * 60.00059 * 12 2 1 14 14 C 1.34776 * 120.00214 * 240.00054 * 12 2 1 15 15 O 1.21579 * 119.99611 * 359.97438 * 14 12 2 16 16 N 1.34779 * 119.99817 * 180.02562 * 14 12 2 17 17 C 1.39536 * 119.99580 * 184.76443 * 16 14 12 18 18 C 1.39403 * 120.85906 * 324.53130 * 17 16 14 19 19 C 1.37948 * 119.06997 * 179.75139 * 18 17 16 20 20 N 1.31967 * 120.83785 * 0.53640 * 19 18 17 21 21 C 1.31973 * 121.89528 * 359.71764 * 20 19 18 22 22 C 1.37936 * 120.83894 * 0.02562 * 21 20 19 23 23 H 1.09003 * 109.46850 * 305.80768 * 1 2 3 24 24 H 1.08999 * 109.47282 * 65.80485 * 1 2 3 25 25 H 1.08999 * 109.47163 * 185.80886 * 1 2 3 26 26 H 0.97005 * 120.00161 * 354.86604 * 7 6 4 27 27 H 1.08999 * 109.47141 * 90.00084 * 13 12 2 28 28 H 1.09005 * 109.46923 * 209.99897 * 13 12 2 29 29 H 1.09000 * 109.47269 * 329.99828 * 13 12 2 30 30 H 0.96996 * 120.00309 * 4.75834 * 16 14 12 31 31 H 1.07993 * 120.46576 * 359.97438 * 18 17 16 32 32 H 1.07995 * 119.57857 * 180.25377 * 19 18 17 33 33 H 1.08003 * 119.57804 * 180.02562 * 21 20 19 34 34 H 1.08006 * 120.46462 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5767 -1.6383 -1.1338 6 6 1.7970 -0.1761 -2.4794 7 7 1.9264 -0.9273 -3.5510 8 14 1.3020 1.6170 -2.6499 9 1 1.1156 1.9446 -4.0863 10 1 0.0302 1.8510 -1.9198 11 1 2.3665 2.4809 -2.0792 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4282 14 6 2.7932 -0.0355 2.0834 15 8 3.0872 1.1283 1.8907 16 7 3.2428 -0.6710 3.1837 17 6 3.9611 0.0327 4.1511 18 6 4.8355 1.0561 3.7888 19 6 5.5231 1.7311 4.7760 20 7 5.3691 1.4115 6.0471 21 6 4.5549 0.4458 6.4296 22 6 3.8273 -0.2735 5.5045 23 1 -0.3633 0.6013 0.8335 24 1 -0.3634 0.4212 -0.9374 25 1 -0.3633 -1.0224 0.1040 26 1 2.2588 -1.8350 -3.4699 27 1 2.4157 -2.7376 0.9719 28 1 1.6237 -2.2850 2.5004 29 1 0.6904 -2.3001 0.9848 30 1 3.0670 -1.6174 3.3030 31 1 4.9700 1.3194 2.7501 32 1 6.1995 2.5281 4.5049 33 1 4.4572 0.2158 7.4803 34 1 3.1631 -1.0629 5.8242 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176525930.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:26 Heat of formation + Delta-G solvation = -2.711370 kcal Electronic energy + Delta-G solvation = -18051.488238 eV Core-core repulsion = 15177.120312 eV Total energy + Delta-G solvation = -2874.367926 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.99081 -40.50123 -37.62348 -36.32771 -34.86875 -32.54282 -32.14169 -30.94393 -27.88646 -26.80496 -24.93116 -24.41088 -22.74411 -20.94571 -19.60928 -19.56469 -18.53650 -17.28749 -17.03368 -16.76436 -16.37855 -15.65078 -15.27901 -15.22474 -14.85744 -14.65293 -14.48307 -14.37112 -13.89426 -13.45387 -13.23618 -13.08757 -12.87754 -12.40476 -12.00468 -11.84221 -11.65404 -11.36502 -11.15601 -10.49782 -10.44776 -10.09050 -9.88879 -9.45098 -8.72984 -6.41818 0.17749 0.24742 1.41707 1.50749 1.53338 1.70144 2.00701 2.40819 2.84087 2.91848 3.02985 3.61517 3.89928 4.02583 4.17135 4.25869 4.39290 4.46566 4.55611 4.68824 4.70395 4.78367 4.85523 4.92874 5.04452 5.11194 5.31415 5.37658 5.59620 5.74705 5.82256 5.95843 6.03882 6.54801 6.85134 7.05000 7.29579 7.43078 8.60418 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.036086 B = 0.005628 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.740390 B = 4974.233581 C = 5334.068708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.248 3.752 3 H 0.033 0.967 4 C -0.605 4.605 5 H 0.031 0.969 6 C -0.008 4.008 7 N -0.930 5.930 8 Si 1.072 2.928 9 H -0.283 1.283 10 H -0.237 1.237 11 H -0.282 1.282 12 N -0.605 5.605 13 C 0.082 3.918 14 C 0.693 3.307 15 O -0.618 6.618 16 N -0.672 5.672 17 C 0.195 3.805 18 C -0.199 4.199 19 C 0.110 3.890 20 N -0.521 5.521 21 C 0.114 3.886 22 C -0.193 4.193 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.255 0.745 27 H 0.046 0.954 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.423 0.577 31 H 0.122 0.878 32 H 0.171 0.829 33 H 0.195 0.805 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 -1.876 18.772 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.145 3.855 3 H 0.051 0.949 4 C -0.644 4.644 5 H 0.050 0.950 6 C -0.208 4.208 7 N -0.566 5.566 8 Si 0.894 3.106 9 H -0.209 1.209 10 H -0.161 1.161 11 H -0.208 1.208 12 N -0.339 5.339 13 C -0.060 4.060 14 C 0.395 3.605 15 O -0.499 6.499 16 N -0.323 5.323 17 C 0.091 3.909 18 C -0.222 4.222 19 C -0.046 4.046 20 N -0.232 5.232 21 C -0.043 4.043 22 C -0.216 4.216 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.264 0.736 31 H 0.140 0.860 32 H 0.188 0.812 33 H 0.212 0.788 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.290 0.477 18.055 18.064 hybrid contribution 0.276 -2.406 -0.339 2.446 sum 0.566 -1.929 17.716 17.830 Atomic orbital electron populations 1.22374 0.96125 1.01745 1.00936 1.18905 0.92024 0.93093 0.81481 0.94927 1.22324 1.40045 1.09340 0.92675 0.95033 1.26830 0.94538 1.07665 0.91793 1.70989 1.43523 1.09827 1.32258 0.83718 0.78849 0.71394 0.76621 1.20857 1.16097 1.20817 1.47240 1.50914 1.13332 1.22412 1.21783 1.02051 0.80278 1.01935 1.16115 0.79450 0.84623 0.80302 1.90848 1.63887 1.17639 1.77494 1.42527 1.56558 1.13560 1.19630 1.18134 0.90330 0.93375 0.89059 1.22304 0.98101 0.99687 1.02078 1.22836 0.96609 0.97721 0.87399 1.67746 1.19573 1.17027 1.18811 1.23192 0.90076 0.89576 1.01420 1.22217 1.04386 1.05203 0.89780 0.93348 0.92227 0.91878 0.93542 0.93557 0.88542 0.90168 0.73596 0.86047 0.81154 0.78816 0.81102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.19 8.95 71.98 0.64 -5.54 16 2 C 0.25 11.67 2.22 44.24 0.10 11.77 16 3 H 0.03 1.71 5.56 -2.39 -0.01 1.70 16 4 C -0.61 -33.19 8.68 25.60 0.22 -32.97 16 5 H 0.03 1.87 7.75 -2.91 -0.02 1.85 16 6 C -0.01 -0.47 5.30 84.66 0.45 -0.02 16 7 N -0.93 -56.61 13.70 21.45 0.29 -56.32 16 8 Si 1.07 50.43 26.29 68.60 1.80 52.23 16 9 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 10 H -0.24 -9.73 5.73 99.48 0.57 -9.16 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 N -0.61 -23.84 2.75 -844.85 -2.33 -26.17 16 13 C 0.08 2.38 9.35 127.77 1.19 3.57 16 14 C 0.69 27.18 8.14 179.05 1.46 28.64 16 15 O -0.62 -29.33 13.19 -3.96 -0.05 -29.38 16 16 N -0.67 -19.13 5.18 -316.68 -1.64 -20.77 16 17 C 0.20 5.41 6.33 38.48 0.24 5.66 16 18 C -0.20 -6.25 8.77 22.48 0.20 -6.05 16 19 C 0.11 2.95 11.17 84.60 0.95 3.89 16 20 N -0.52 -13.05 10.36 -196.12 -2.03 -15.08 16 21 C 0.11 2.20 11.17 84.60 0.95 3.14 16 22 C -0.19 -3.76 10.06 22.48 0.23 -3.53 16 23 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.06 2.49 4.84 -2.39 -0.01 2.48 16 25 H 0.06 2.32 6.45 -2.39 -0.02 2.31 16 26 H 0.26 15.63 8.73 -92.70 -0.81 14.82 16 27 H 0.05 1.40 8.09 -2.39 -0.02 1.38 16 28 H 0.10 1.83 6.44 -2.38 -0.02 1.82 16 29 H 0.08 2.33 6.33 -2.39 -0.02 2.32 16 30 H 0.42 8.72 6.62 -92.71 -0.61 8.10 16 31 H 0.12 4.57 6.36 -2.91 -0.02 4.55 16 32 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 33 H 0.20 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -73.40 281.03 3.01 -70.39 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.34 Total: 16.55 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 6.62 Total: 8.55 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -5.70 Total: -118.33 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.05 Total: -29.38 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 1.80 Total: 52.23 kcal Total: -73.40 3.01 -70.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176525930.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.678 kcal (2) G-P(sol) polarization free energy of solvation -73.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds