Wall clock time and date at job start Thu Apr 9 2020 12:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46958 * 2 1 4 4 C 1.50701 * 109.46531 * 119.99376 * 2 1 3 5 5 H 1.08010 * 119.99670 * 120.00467 * 4 2 1 6 6 C 1.37873 * 120.00557 * 300.00282 * 4 2 1 7 7 N 1.31518 * 119.99751 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00221 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47174 * 89.99749 * 8 6 4 10 10 H 1.48507 * 109.46978 * 209.99967 * 8 6 4 11 11 H 1.48500 * 109.47200 * 329.99488 * 8 6 4 12 12 N 1.46495 * 109.47296 * 239.99345 * 2 1 3 13 13 C 1.46500 * 120.00501 * 300.00395 * 12 2 1 14 14 C 1.34782 * 119.99713 * 120.00642 * 12 2 1 15 15 O 1.21585 * 120.00102 * 359.97438 * 14 12 2 16 16 N 1.34772 * 119.99607 * 180.02562 * 14 12 2 17 17 C 1.39973 * 119.99841 * 185.27763 * 16 14 12 18 18 C 1.39277 * 120.48445 * 32.81017 * 17 16 14 19 19 C 1.38514 * 118.35831 * 180.23991 * 18 17 16 20 20 C 1.38267 * 119.23751 * 359.50730 * 19 18 17 21 21 N 1.31860 * 120.91320 * 0.25798 * 20 19 18 22 22 C 1.31822 * 121.79769 * 359.97438 * 21 20 19 23 23 H 1.09001 * 109.46958 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47532 * 300.00520 * 1 2 3 25 25 H 1.09007 * 109.46409 * 60.00677 * 1 2 3 26 26 H 0.97003 * 120.00080 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.47225 * 270.00308 * 13 12 2 28 28 H 1.09002 * 109.46736 * 29.99553 * 13 12 2 29 29 H 1.08993 * 109.47299 * 149.99967 * 13 12 2 30 30 H 0.97003 * 120.00775 * 5.28163 * 16 14 12 31 31 H 1.08000 * 120.82313 * 359.97438 * 18 17 16 32 32 H 1.08000 * 120.37641 * 179.78542 * 19 18 17 33 33 H 1.08002 * 119.54594 * 180.22760 * 20 19 18 34 34 H 1.07999 * 119.66186 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6034 8 14 2.3222 -1.1194 4.0081 9 1 3.6302 -0.5439 4.4121 10 1 1.3440 -0.9487 5.1124 11 1 2.4877 -2.5652 3.7125 12 7 2.0184 -0.6907 -1.1960 13 6 1.6645 -2.0933 -1.4279 14 6 2.7934 -0.0358 -2.0832 15 8 3.0868 1.1284 -1.8910 16 7 3.2422 -0.6711 -3.1838 17 6 4.1357 -0.0275 -4.0479 18 6 5.0710 0.8772 -3.5515 19 6 5.9305 1.4927 -4.4466 20 6 5.8397 1.1838 -5.7912 21 7 4.9458 0.3187 -6.2287 22 6 4.1063 -0.2857 -5.4117 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 0.7085 1.1615 3.4843 27 1 2.4158 -2.7378 -0.9714 28 1 0.6905 -2.3003 -0.9845 29 1 1.6240 -2.2854 -2.5000 30 1 2.9462 -1.5743 -3.3772 31 1 5.1221 1.0968 -2.4953 32 1 6.6661 2.2023 -4.0975 33 1 6.5098 1.6580 -6.4930 34 1 3.3882 -0.9887 -5.8073 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176526276.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:28 Heat of formation + Delta-G solvation = 19.380722 kcal Electronic energy + Delta-G solvation = -17986.840089 eV Core-core repulsion = 15113.430147 eV Total energy + Delta-G solvation = -2873.409941 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.59297 -39.12630 -35.79413 -34.64658 -32.90954 -31.93629 -30.15413 -28.74358 -26.29355 -25.26015 -23.74530 -23.24169 -21.19607 -19.29587 -18.06544 -17.02512 -16.76744 -16.21637 -15.92698 -15.16547 -14.74528 -14.32750 -13.91423 -13.73357 -13.25337 -12.96622 -12.71834 -12.65231 -12.05093 -11.68051 -11.59913 -11.09799 -10.91084 -10.82658 -10.59726 -10.29783 -10.20944 -9.76506 -9.56191 -9.26637 -9.13018 -8.47973 -8.17251 -7.63925 -6.11905 -4.20158 1.19202 1.44133 3.03965 3.24258 3.31136 3.33001 3.61571 4.02997 4.28056 4.42019 4.59405 4.95592 5.06509 5.19281 5.24215 5.41192 5.52809 5.67204 5.91671 6.12955 6.20590 6.33653 6.44813 6.64875 6.73963 6.90640 7.00740 7.06777 7.37943 7.62972 7.73076 7.99348 8.02714 8.14476 8.52247 8.80115 9.08145 9.46806 10.93406 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.036830 B = 0.005208 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.072868 B = 5374.849752 C = 5601.718971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.272 3.728 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.601 5.601 13 C 0.086 3.914 14 C 0.696 3.304 15 O -0.579 6.579 16 N -0.691 5.691 17 C 0.136 3.864 18 C -0.082 4.082 19 C -0.149 4.149 20 C 0.063 3.937 21 N -0.468 5.468 22 C 0.060 3.940 23 H 0.030 0.970 24 H 0.095 0.905 25 H 0.012 0.988 26 H 0.264 0.736 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.405 0.595 31 H 0.150 0.850 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.784 -4.387 -11.753 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.171 3.829 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.336 5.336 13 C -0.058 4.058 14 C 0.397 3.603 15 O -0.456 6.456 16 N -0.341 5.341 17 C 0.036 3.964 18 C -0.111 4.111 19 C -0.170 4.170 20 C -0.095 4.095 21 N -0.176 5.176 22 C -0.101 4.101 23 H 0.049 0.951 24 H 0.114 0.886 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.242 0.758 31 H 0.168 0.832 32 H 0.153 0.847 33 H 0.170 0.830 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.773 -3.641 -12.216 13.611 hybrid contribution 0.112 -0.812 1.763 1.944 sum 4.885 -4.452 -10.453 12.367 Atomic orbital electron populations 1.22123 0.98152 0.99416 1.00984 1.18934 0.90742 0.94325 0.78853 0.91676 1.21309 1.31942 1.13088 0.90217 0.92280 1.24886 0.94900 0.94988 0.98962 1.69878 1.36214 1.22591 1.23851 0.86476 0.78659 0.79822 0.82301 1.20607 1.21090 1.19941 1.47642 1.50808 1.11571 1.23536 1.21529 1.02306 0.83392 0.98568 1.16002 0.79791 0.84933 0.79528 1.90883 1.62806 1.15259 1.76673 1.42953 1.47669 1.18680 1.24757 1.18652 0.90833 0.96538 0.90340 1.21792 0.91751 0.95432 1.02099 1.22067 1.00010 1.00631 0.94263 1.22583 0.97079 0.95738 0.94144 1.67571 1.04105 1.07481 1.38471 1.22461 0.98944 1.01027 0.87638 0.95055 0.88625 0.96898 0.92615 0.93051 0.90255 0.93636 0.75773 0.83246 0.84726 0.83005 0.82968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.95 37.16 0.33 -3.13 16 2 C 0.27 6.78 2.64 -69.08 -0.18 6.59 16 3 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.53 -13.91 8.37 -34.44 -0.29 -14.20 16 5 H 0.06 1.54 7.65 -52.48 -0.40 1.14 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.60 -12.42 2.75 -181.01 -0.50 -12.92 16 13 C 0.09 1.35 9.49 59.85 0.57 1.92 16 14 C 0.70 14.24 8.04 -86.92 -0.70 13.54 16 15 O -0.58 -14.04 13.37 5.29 0.07 -13.97 16 16 N -0.69 -10.77 5.23 -14.13 -0.07 -10.84 16 17 C 0.14 2.07 6.31 -83.53 -0.53 1.55 16 18 C -0.08 -1.31 8.77 -39.09 -0.34 -1.65 16 19 C -0.15 -1.92 10.10 -39.47 -0.40 -2.32 16 20 C 0.06 0.77 11.18 -17.53 -0.20 0.57 16 21 N -0.47 -6.48 10.35 -13.09 -0.14 -6.61 16 22 C 0.06 0.80 11.12 -17.34 -0.19 0.61 16 23 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 24 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.26 6.43 -51.93 -0.33 0.93 16 29 H 0.05 0.53 6.29 -51.93 -0.33 0.20 16 30 H 0.40 4.90 6.51 -40.82 -0.27 4.64 16 31 H 0.15 2.71 6.49 -52.49 -0.34 2.37 16 32 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 285.92 15.07 4.31 4.31 Total: -1.00 -31.33 285.92 -6.68 -38.01 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -3.94 Total: 5.25 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -2.02 Total: 5.15 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.08 Total: -54.41 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.07 Total: -13.97 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.33 -6.68 -38.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176526276.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.392 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds