Wall clock time and date at job start Thu Apr 9 2020 12:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46958 * 2 1 4 4 C 1.50701 * 109.46531 * 119.99376 * 2 1 3 5 5 H 1.08010 * 119.99670 * 120.00467 * 4 2 1 6 6 C 1.37873 * 120.00557 * 300.00282 * 4 2 1 7 7 N 1.31518 * 119.99751 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00221 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47174 * 89.99749 * 8 6 4 10 10 H 1.48507 * 109.46978 * 209.99967 * 8 6 4 11 11 H 1.48500 * 109.47200 * 329.99488 * 8 6 4 12 12 N 1.46495 * 109.47296 * 239.99345 * 2 1 3 13 13 C 1.46500 * 120.00501 * 300.00395 * 12 2 1 14 14 C 1.34782 * 119.99713 * 120.00642 * 12 2 1 15 15 O 1.21585 * 120.00102 * 359.97438 * 14 12 2 16 16 N 1.34772 * 119.99607 * 180.02562 * 14 12 2 17 17 C 1.39973 * 119.99841 * 185.27763 * 16 14 12 18 18 C 1.39277 * 120.48445 * 32.81017 * 17 16 14 19 19 C 1.38514 * 118.35831 * 180.23991 * 18 17 16 20 20 C 1.38267 * 119.23751 * 359.50730 * 19 18 17 21 21 N 1.31860 * 120.91320 * 0.25798 * 20 19 18 22 22 C 1.31822 * 121.79769 * 359.97438 * 21 20 19 23 23 H 1.09001 * 109.46958 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47532 * 300.00520 * 1 2 3 25 25 H 1.09007 * 109.46409 * 60.00677 * 1 2 3 26 26 H 0.97003 * 120.00080 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.47225 * 270.00308 * 13 12 2 28 28 H 1.09002 * 109.46736 * 29.99553 * 13 12 2 29 29 H 1.08993 * 109.47299 * 149.99967 * 13 12 2 30 30 H 0.97003 * 120.00775 * 5.28163 * 16 14 12 31 31 H 1.08000 * 120.82313 * 359.97438 * 18 17 16 32 32 H 1.08000 * 120.37641 * 179.78542 * 19 18 17 33 33 H 1.08002 * 119.54594 * 180.22760 * 20 19 18 34 34 H 1.07999 * 119.66186 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6034 8 14 2.3222 -1.1194 4.0081 9 1 3.6302 -0.5439 4.4121 10 1 1.3440 -0.9487 5.1124 11 1 2.4877 -2.5652 3.7125 12 7 2.0184 -0.6907 -1.1960 13 6 1.6645 -2.0933 -1.4279 14 6 2.7934 -0.0358 -2.0832 15 8 3.0868 1.1284 -1.8910 16 7 3.2422 -0.6711 -3.1838 17 6 4.1357 -0.0275 -4.0479 18 6 5.0710 0.8772 -3.5515 19 6 5.9305 1.4927 -4.4466 20 6 5.8397 1.1838 -5.7912 21 7 4.9458 0.3187 -6.2287 22 6 4.1063 -0.2857 -5.4117 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 0.7085 1.1615 3.4843 27 1 2.4158 -2.7378 -0.9714 28 1 0.6905 -2.3003 -0.9845 29 1 1.6240 -2.2854 -2.5000 30 1 2.9462 -1.5743 -3.3772 31 1 5.1221 1.0968 -2.4953 32 1 6.6661 2.2023 -4.0975 33 1 6.5098 1.6580 -6.4930 34 1 3.3882 -0.9887 -5.8073 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176526276.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:27 Heat of formation + Delta-G solvation = -1.612033 kcal Electronic energy + Delta-G solvation = -17987.750403 eV Core-core repulsion = 15113.430147 eV Total energy + Delta-G solvation = -2874.320256 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.90367 -40.44985 -37.44343 -36.12240 -34.76717 -33.04796 -31.72633 -30.19325 -27.71567 -27.28262 -24.96793 -24.41453 -22.80361 -20.84816 -19.48074 -18.57949 -18.12667 -17.76326 -17.17827 -16.86294 -16.25158 -16.00677 -15.02198 -14.92708 -14.83714 -14.45867 -14.23756 -13.98364 -13.48603 -13.23627 -12.98642 -12.89246 -12.73114 -12.64580 -12.19649 -12.10351 -11.93317 -11.32922 -11.16579 -10.65899 -10.54087 -10.36878 -9.57760 -9.10289 -8.14704 -6.31231 0.12974 0.30939 1.42055 1.42922 1.52627 1.65390 2.11139 2.41495 2.91759 2.99403 3.13653 3.64376 3.91817 4.00294 4.16292 4.27665 4.41062 4.60452 4.71114 4.74209 4.88297 4.99172 5.03951 5.10644 5.23568 5.27972 5.43167 5.51297 5.65083 5.84461 5.95459 6.12972 6.19880 6.75881 6.98512 7.01292 7.35391 7.55670 8.89547 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.036830 B = 0.005208 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.072868 B = 5374.849752 C = 5601.718971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.277 3.723 3 H 0.011 0.989 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.283 1.283 10 H -0.280 1.280 11 H -0.262 1.262 12 N -0.609 5.609 13 C 0.081 3.919 14 C 0.691 3.309 15 O -0.627 6.627 16 N -0.670 5.670 17 C 0.111 3.889 18 C -0.108 4.108 19 C -0.147 4.147 20 C 0.071 3.929 21 N -0.481 5.481 22 C 0.071 3.929 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.019 0.981 26 H 0.265 0.735 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.423 0.577 31 H 0.117 0.883 32 H 0.159 0.841 33 H 0.190 0.810 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 -6.141 -13.360 15.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.175 3.825 3 H 0.029 0.971 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.210 1.210 10 H -0.206 1.206 11 H -0.186 1.186 12 N -0.343 5.343 13 C -0.062 4.062 14 C 0.393 3.607 15 O -0.508 6.508 16 N -0.321 5.321 17 C 0.013 3.987 18 C -0.136 4.136 19 C -0.167 4.167 20 C -0.086 4.086 21 N -0.189 5.189 22 C -0.089 4.089 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.039 0.961 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.263 0.737 31 H 0.135 0.865 32 H 0.177 0.823 33 H 0.206 0.794 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.391 -5.459 -13.879 15.858 hybrid contribution 0.002 -0.211 2.156 2.166 sum 5.393 -5.670 -11.723 14.095 Atomic orbital electron populations 1.21905 0.96997 1.00308 1.00013 1.18498 0.91525 0.91992 0.80496 0.97109 1.21562 1.31914 1.13095 0.91043 0.92145 1.25708 0.95052 0.95640 1.01941 1.70021 1.37218 1.23881 1.24462 0.85460 0.77726 0.79208 0.78628 1.20969 1.20574 1.18575 1.47484 1.50992 1.13361 1.22453 1.21806 1.02283 0.80348 1.01717 1.16161 0.79593 0.84488 0.80450 1.90850 1.64371 1.17597 1.77948 1.42541 1.47201 1.19158 1.23227 1.18847 0.91190 0.97526 0.91167 1.21755 0.93655 0.97015 1.01204 1.22329 0.99681 1.00449 0.94255 1.23189 0.96545 0.94541 0.94339 1.67698 1.04626 1.08071 1.38507 1.22850 0.98876 1.00704 0.86438 0.93070 0.91255 0.96143 0.92616 0.92456 0.90322 0.89137 0.73656 0.86546 0.82324 0.79354 0.79973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.33 8.95 71.98 0.64 -5.68 16 2 C 0.28 14.24 2.64 44.25 0.12 14.36 16 3 H 0.01 0.68 6.90 -2.39 -0.02 0.66 16 4 C -0.54 -28.78 8.37 25.60 0.21 -28.56 16 5 H 0.06 3.14 7.65 -2.91 -0.02 3.12 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -52.31 11.32 21.45 0.24 -52.07 16 8 Si 0.96 42.53 29.54 68.60 2.03 44.55 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 12 N -0.61 -25.23 2.75 -844.84 -2.33 -27.56 16 13 C 0.08 2.37 9.49 127.77 1.21 3.58 16 14 C 0.69 28.77 8.04 179.05 1.44 30.21 16 15 O -0.63 -32.00 13.37 -3.98 -0.05 -32.05 16 16 N -0.67 -20.23 5.23 -316.87 -1.66 -21.89 16 17 C 0.11 3.29 6.31 38.23 0.24 3.53 16 18 C -0.11 -3.46 8.77 22.59 0.20 -3.26 16 19 C -0.15 -3.58 10.10 22.34 0.23 -3.35 16 20 C 0.07 1.55 11.18 84.70 0.95 2.49 16 21 N -0.48 -11.91 10.35 -195.33 -2.02 -13.93 16 22 C 0.07 1.73 11.12 84.84 0.94 2.68 16 23 H 0.05 2.16 6.66 -2.39 -0.02 2.15 16 24 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 25 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 2.33 6.43 -2.39 -0.02 2.32 16 29 H 0.09 1.80 6.29 -2.39 -0.02 1.79 16 30 H 0.42 9.18 6.51 -92.71 -0.60 8.58 16 31 H 0.12 4.52 6.49 -2.91 -0.02 4.50 16 32 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 33 H 0.19 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.18 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -70.95 285.92 3.36 -67.59 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.52 Total: 18.03 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 6.63 Total: 17.33 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -5.76 Total: -115.45 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.05 Total: -32.05 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -70.95 3.36 -67.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176526276.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.976 kcal (2) G-P(sol) polarization free energy of solvation -70.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds