Wall clock time and date at job start Thu Apr 9 2020 12:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47487 * 2 1 4 4 C 1.50702 * 109.47306 * 239.99741 * 2 1 3 5 5 H 1.08004 * 120.00347 * 240.00571 * 4 2 1 6 6 C 1.37881 * 119.99741 * 59.99611 * 4 2 1 7 7 N 1.31514 * 120.00135 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99817 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46671 * 90.00863 * 8 6 4 10 10 H 1.48498 * 109.46958 * 210.00266 * 8 6 4 11 11 H 1.48494 * 109.47424 * 330.00537 * 8 6 4 12 12 N 1.46504 * 109.47042 * 119.99963 * 2 1 3 13 13 C 1.46495 * 119.99945 * 59.99903 * 12 2 1 14 14 C 1.34780 * 120.00058 * 239.99272 * 12 2 1 15 15 O 1.21585 * 119.99931 * 0.02562 * 14 12 2 16 16 N 1.34772 * 119.99977 * 180.02562 * 14 12 2 17 17 C 1.39972 * 120.00083 * 185.28673 * 16 14 12 18 18 C 1.39277 * 120.48361 * 32.79426 * 17 16 14 19 19 C 1.38514 * 118.35802 * 180.22231 * 18 17 16 20 20 C 1.38268 * 119.23325 * 359.52210 * 19 18 17 21 21 N 1.31853 * 120.92034 * 0.26286 * 20 19 18 22 22 C 1.31823 * 121.79546 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.46879 * 59.99926 * 1 2 3 24 24 H 1.09001 * 109.47275 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46695 * 300.00275 * 1 2 3 26 26 H 0.96997 * 120.00364 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.47197 * 270.00055 * 13 12 2 28 28 H 1.09005 * 109.47575 * 30.00115 * 13 12 2 29 29 H 1.09003 * 109.47258 * 149.99995 * 13 12 2 30 30 H 0.96999 * 119.99890 * 5.28112 * 16 14 12 31 31 H 1.07993 * 120.82222 * 0.02562 * 18 17 16 32 32 H 1.08001 * 120.38131 * 179.80507 * 19 18 17 33 33 H 1.08003 * 119.54124 * 180.23312 * 20 19 18 34 34 H 1.07998 * 119.66977 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.3426 -2.1618 -4.4118 10 1 2.4865 -0.1416 -5.1122 11 1 3.6292 -1.7585 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0868 1.1285 1.8911 16 7 3.2429 -0.6712 3.1835 17 6 3.9542 0.0369 4.1592 18 6 3.6638 1.3752 4.4133 19 6 4.3980 2.0347 5.3851 20 6 5.3804 1.3462 6.0726 21 7 5.6279 0.0777 5.8112 22 6 4.9559 -0.5858 4.8915 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7093 1.1616 -3.4844 27 1 0.7375 -2.1443 1.9994 28 1 1.5294 -2.5969 0.4709 29 1 2.4628 -2.5819 1.9864 30 1 3.0736 -1.6192 3.2992 31 1 2.8875 1.8869 3.8639 32 1 4.2024 3.0736 5.6064 33 1 5.9534 1.8545 6.8340 34 1 5.1869 -1.6243 4.7058 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176526291.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:29 Heat of formation + Delta-G solvation = 18.685983 kcal Electronic energy + Delta-G solvation = -17979.023921 eV Core-core repulsion = 15105.583853 eV Total energy + Delta-G solvation = -2873.440067 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.59657 -39.12693 -35.78825 -34.64653 -32.90944 -31.94515 -30.15502 -28.75269 -26.25643 -25.27119 -23.75373 -23.24413 -21.20203 -19.30608 -18.08324 -17.05432 -16.74271 -16.27575 -15.80701 -15.17316 -14.81988 -14.31197 -13.89865 -13.75605 -13.22423 -12.97675 -12.71120 -12.57905 -12.07924 -11.70112 -11.57672 -11.13749 -10.90420 -10.74756 -10.66466 -10.31628 -10.21436 -9.77297 -9.57082 -9.23943 -9.15542 -8.48118 -8.17360 -7.64272 -6.12160 -4.20356 1.18868 1.43309 3.04016 3.23465 3.31237 3.34355 3.60864 4.02439 4.29330 4.41796 4.59716 4.95126 5.05440 5.19368 5.22944 5.41576 5.53781 5.66753 5.88641 6.14009 6.23653 6.31568 6.43867 6.64188 6.73933 6.92421 7.00417 7.06974 7.37689 7.62055 7.73155 7.99760 8.02627 8.14720 8.51909 8.79589 9.08268 9.46505 10.93214 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.037964 B = 0.005065 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.372604 B = 5526.627150 C = 5574.127250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.272 3.728 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.601 5.601 13 C 0.083 3.917 14 C 0.696 3.304 15 O -0.579 6.579 16 N -0.691 5.691 17 C 0.136 3.864 18 C -0.083 4.083 19 C -0.150 4.150 20 C 0.063 3.937 21 N -0.467 5.467 22 C 0.060 3.940 23 H 0.095 0.905 24 H 0.030 0.970 25 H 0.011 0.989 26 H 0.264 0.736 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.405 0.595 31 H 0.149 0.851 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.469 -3.598 13.138 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.171 3.829 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.335 5.335 13 C -0.061 4.061 14 C 0.397 3.603 15 O -0.456 6.456 16 N -0.341 5.341 17 C 0.037 3.963 18 C -0.111 4.111 19 C -0.170 4.170 20 C -0.095 4.095 21 N -0.176 5.176 22 C -0.100 4.100 23 H 0.113 0.887 24 H 0.049 0.951 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.242 0.758 31 H 0.166 0.834 32 H 0.153 0.847 33 H 0.170 0.830 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.148 -3.087 13.183 13.901 hybrid contribution -0.477 -0.604 -1.394 1.593 sum 2.671 -3.691 11.789 12.639 Atomic orbital electron populations 1.22102 0.98049 0.99459 1.00873 1.18932 0.90739 0.94339 0.78842 0.91694 1.21317 1.31991 1.13137 0.90272 0.92233 1.24884 0.94897 0.94954 0.98970 1.69871 1.36266 1.22475 1.23868 0.86475 0.79172 0.79296 0.82334 1.20581 1.21055 1.19947 1.47648 1.50319 1.11654 1.23888 1.21576 0.98389 0.83372 1.02788 1.16005 0.79654 0.85138 0.79462 1.90883 1.62353 1.15521 1.76857 1.42955 1.58142 1.12855 1.20098 1.18653 0.93325 0.93421 0.90923 1.21755 0.99892 0.93730 0.95767 1.22060 0.97135 1.01247 0.96557 1.22583 0.96971 0.90433 0.99558 1.67573 1.25345 1.09293 1.15368 1.22476 0.91881 1.00675 0.94965 0.88686 0.95123 0.96983 0.92604 0.93641 0.89496 0.93491 0.75759 0.83377 0.84739 0.83004 0.82930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.16 0.33 -3.07 16 2 C 0.27 6.78 2.64 -69.08 -0.18 6.60 16 3 H 0.07 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -13.97 7.99 -34.44 -0.28 -14.25 16 5 H 0.06 1.55 7.33 -52.48 -0.38 1.16 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.67 11.32 55.43 0.63 -24.05 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.60 -12.42 2.75 -181.00 -0.50 -12.92 16 13 C 0.08 1.30 9.24 59.84 0.55 1.85 16 14 C 0.70 14.27 8.05 -86.92 -0.70 13.57 16 15 O -0.58 -14.06 13.37 5.29 0.07 -13.99 16 16 N -0.69 -10.79 5.23 -14.13 -0.07 -10.86 16 17 C 0.14 2.08 6.31 -83.53 -0.53 1.55 16 18 C -0.08 -1.29 8.77 -39.09 -0.34 -1.64 16 19 C -0.15 -1.89 10.10 -39.47 -0.40 -2.29 16 20 C 0.06 0.77 11.18 -17.53 -0.20 0.57 16 21 N -0.47 -6.51 10.35 -13.09 -0.14 -6.65 16 22 C 0.06 0.82 11.12 -17.33 -0.19 0.63 16 23 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 24 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.46 7.02 -51.93 -0.36 1.09 16 29 H 0.05 0.57 6.29 -51.93 -0.33 0.24 16 30 H 0.40 4.93 6.51 -40.82 -0.27 4.67 16 31 H 0.15 2.58 6.48 -52.49 -0.34 2.24 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 286.59 15.07 4.32 4.32 Total: -1.00 -31.43 286.59 -6.74 -38.16 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.00 Total: 5.10 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -2.02 Total: 5.18 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.08 Total: -54.47 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.07 Total: -13.99 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.43 -6.74 -38.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176526291.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.847 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds