Wall clock time and date at job start Thu Apr 9 2020 12:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30176 * 126.79832 * 2 1 4 4 O 1.20924 * 111.60303 * 180.02562 * 3 2 1 5 5 C 1.34050 * 111.56552 * 359.76096 * 4 3 2 6 6 C 1.35443 * 106.44411 * 0.38115 * 5 4 3 7 7 C 1.50701 * 128.00570 * 179.91188 * 6 5 4 8 8 N 1.46901 * 109.46921 * 259.67652 * 7 6 5 9 9 C 1.46906 * 110.99793 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.46978 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.47607 * 54.99702 * 10 9 8 12 12 C 1.47206 * 109.47245 * 294.99931 * 10 9 8 13 13 N 5.71600 * 60.77163 * 225.79663 * 2 1 3 14 14 C 1.53001 * 109.46969 * 175.00329 * 10 9 8 15 15 C 1.50703 * 109.47012 * 185.00016 * 14 10 9 16 16 H 1.07998 * 119.99974 * 359.97438 * 15 14 10 17 17 C 1.37877 * 120.00187 * 179.97438 * 15 14 10 18 18 N 1.31520 * 119.99776 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00185 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46846 * 90.00127 * 19 17 15 21 21 H 1.48500 * 109.46993 * 209.99659 * 19 17 15 22 22 H 1.48501 * 109.47003 * 329.99834 * 19 17 15 23 23 H 1.09000 * 109.47253 * 269.97673 * 1 2 3 24 24 H 1.08996 * 109.46950 * 29.97766 * 1 2 3 25 25 H 1.09006 * 109.46681 * 149.97789 * 1 2 3 26 26 H 1.08000 * 126.77336 * 180.28468 * 5 4 3 27 27 H 1.09002 * 109.47060 * 19.67833 * 7 6 5 28 28 H 1.09001 * 109.47380 * 139.67920 * 7 6 5 29 29 H 1.00899 * 111.00283 * 303.95218 * 8 7 6 30 30 H 1.08995 * 109.47087 * 299.99901 * 9 8 7 31 31 H 1.09002 * 109.46903 * 59.99922 * 9 8 7 32 32 H 1.09004 * 109.46816 * 304.99383 * 14 10 9 33 33 H 1.08993 * 109.47518 * 65.00018 * 14 10 9 34 34 H 0.96999 * 120.00038 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6068 0.0043 6 6 2.3540 -1.1320 -0.0006 7 6 1.9592 -2.5863 0.0000 8 7 1.5975 -2.9960 -1.3636 9 6 1.2067 -4.4116 -1.4018 10 6 0.8386 -4.8005 -2.8350 11 1 1.6674 -4.5603 -3.5010 12 6 -0.3593 -4.0544 -3.2537 13 7 -1.2841 -3.4778 -3.5759 14 6 0.5521 -6.3021 -2.8983 15 6 0.3099 -6.7074 -4.3295 16 1 0.3554 -5.9679 -5.1152 17 6 0.0303 -8.0223 -4.6358 18 7 -0.0246 -8.9230 -3.6790 19 14 -0.2706 -8.5245 -6.4097 20 1 1.0173 -8.9111 -7.0399 21 1 -1.2052 -9.6779 -6.4459 22 1 -0.8630 -7.3838 -7.1534 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8899 -0.5142 26 1 4.5340 -1.1533 0.0093 27 1 2.7962 -3.1900 0.3508 28 1 1.1048 -2.7307 0.6613 29 1 0.8665 -2.4086 -1.7358 30 1 2.0388 -5.0276 -1.0609 31 1 0.3473 -4.5689 -0.7501 32 1 1.4070 -6.8520 -2.5047 33 1 -0.3316 -6.5289 -2.3020 34 1 -0.2209 -9.8482 -3.8945 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335970610.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:25 Heat of formation + Delta-G solvation = 50.757748 kcal Electronic energy + Delta-G solvation = -17142.752251 eV Core-core repulsion = 14270.702920 eV Total energy + Delta-G solvation = -2872.049331 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.87114 -38.97900 -37.16704 -35.79150 -35.09699 -33.60647 -32.34501 -29.71340 -28.82344 -26.57277 -23.99659 -23.55559 -22.31395 -22.20615 -18.62628 -18.51246 -18.34730 -18.16964 -16.83898 -16.61188 -15.86439 -15.63642 -14.87796 -14.77989 -14.31349 -14.20914 -14.11110 -14.10787 -13.78177 -13.41899 -13.27724 -13.16358 -13.02863 -12.60923 -12.47430 -12.33719 -12.02160 -11.87842 -11.41877 -11.17551 -10.82428 -10.53223 -10.40953 -9.39813 -8.18586 -6.26191 0.63012 1.21360 1.40867 1.43065 1.51701 1.94672 1.97190 2.42319 2.45681 3.16916 3.18020 3.26946 3.38816 3.63060 4.02429 4.07509 4.24680 4.44905 4.52327 4.55505 4.65113 4.75815 4.77107 4.91482 4.98050 4.99310 5.03280 5.21251 5.49696 5.65348 5.81100 5.98077 6.22683 6.26252 6.76179 6.88955 7.36156 7.42427 8.92165 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.041630 B = 0.003925 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.423666 B = 7131.813498 C = 7354.251536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.007 3.993 3 N -0.402 5.402 4 O 0.085 5.915 5 C -0.024 4.024 6 C -0.212 4.212 7 C 0.137 3.863 8 N -0.690 5.690 9 C 0.078 3.922 10 C 0.018 3.982 11 H 0.122 0.878 12 C 0.250 3.750 13 N -0.507 5.507 14 C 0.038 3.962 15 C -0.540 4.540 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.922 5.922 19 Si 0.946 3.054 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.278 1.278 23 H 0.094 0.906 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.259 0.741 27 H 0.113 0.887 28 H 0.049 0.951 29 H 0.331 0.669 30 H 0.115 0.885 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.002 0.998 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.384 12.267 10.635 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.152 4.152 3 N -0.110 5.110 4 O 0.023 5.977 5 C -0.106 4.106 6 C -0.217 4.217 7 C 0.009 3.991 8 N -0.320 5.320 9 C -0.051 4.051 10 C -0.004 4.004 11 H 0.140 0.860 12 C -0.066 4.066 13 N -0.184 5.184 14 C -0.001 4.001 15 C -0.578 4.578 16 H 0.070 0.930 17 C -0.186 4.186 18 N -0.562 5.562 19 Si 0.772 3.228 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.203 1.203 23 H 0.112 0.888 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.275 0.725 27 H 0.131 0.869 28 H 0.067 0.933 29 H 0.149 0.851 30 H 0.133 0.867 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.020 0.980 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.404 14.155 9.999 18.846 hybrid contribution -1.115 -1.507 -0.616 1.973 sum 6.290 12.648 9.383 16.958 Atomic orbital electron populations 1.20207 0.85510 1.03650 1.04103 1.23926 0.99744 0.89123 1.02360 1.73834 0.90212 1.25248 1.21728 1.84769 1.20928 1.24498 1.67472 1.26595 1.01931 0.82369 0.99683 1.21347 0.92786 0.97253 1.10309 1.20184 1.01700 0.88107 0.89122 1.60617 1.46183 1.03415 1.21825 1.21971 1.01052 0.89154 0.92967 1.19268 0.88721 0.94203 0.98212 0.86017 1.29775 0.94337 0.91121 0.91413 1.81060 1.12799 1.13689 1.10866 1.18994 0.97283 0.88044 0.95736 1.21568 1.48017 0.93831 0.94378 0.92996 1.25667 0.95216 0.96992 1.00691 1.70021 1.50022 1.02622 1.33553 0.85735 0.78449 0.77602 0.81024 1.19174 1.21042 1.20271 0.88788 0.90680 0.90456 0.72513 0.86875 0.93301 0.85147 0.86692 0.94405 0.94153 0.97977 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 10.39 71.24 0.74 -0.75 16 2 C 0.01 0.17 7.33 43.58 0.32 0.49 16 3 N -0.40 -10.20 12.07 -49.55 -0.60 -10.80 16 4 O 0.09 1.82 11.20 71.53 0.80 2.62 16 5 C -0.02 -0.37 12.26 67.17 0.82 0.46 16 6 C -0.21 -3.99 5.84 -19.74 -0.12 -4.11 16 7 C 0.14 2.33 6.17 85.56 0.53 2.86 16 8 N -0.69 -15.28 6.49 -517.92 -3.36 -18.64 16 9 C 0.08 1.93 5.12 86.30 0.44 2.38 16 10 C 0.02 0.60 2.42 -12.60 -0.03 0.57 16 11 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 12 C 0.25 9.62 12.98 89.44 1.16 10.78 16 13 N -0.51 -21.40 18.54 20.01 0.37 -21.02 16 14 C 0.04 1.69 4.42 29.85 0.13 1.82 16 15 C -0.54 -28.00 8.60 25.60 0.22 -27.78 16 16 H 0.05 2.69 7.59 -2.91 -0.02 2.66 16 17 C 0.01 0.72 5.46 84.65 0.46 1.18 16 18 N -0.92 -51.90 13.29 21.45 0.28 -51.62 16 19 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.08 1.49 7.78 -2.38 -0.02 1.47 16 26 H 0.26 1.42 8.06 -2.91 -0.02 1.39 16 27 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.33 8.31 7.44 -89.69 -0.67 7.64 16 30 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -65.45 305.89 4.65 -60.80 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 0.44 Total: 5.86 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 4.68 Total: -12.11 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -3.30 Total: -102.08 kcal Atomic # 8 Polarization: 1.82 SS G_CDS: 0.80 Total: 2.62 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -65.45 4.65 -60.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335970610.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.555 kcal (2) G-P(sol) polarization free energy of solvation -65.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds