Wall clock time and date at job start Thu Apr 9 2020 12:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30180 * 126.79677 * 2 1 4 4 O 1.20929 * 111.59877 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.56416 * 359.75929 * 4 3 2 6 6 C 1.35441 * 106.45011 * 0.38377 * 5 4 3 7 7 C 1.50704 * 128.00883 * 179.91188 * 6 5 4 8 8 N 1.46900 * 109.47086 * 259.67996 * 7 6 5 9 9 C 1.46904 * 110.99779 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.46858 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00128 * 10 9 8 12 12 C 1.47204 * 109.47042 * 64.99895 * 10 9 8 13 13 N 6.51548 * 102.80316 * 223.24967 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99851 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 H 1.09005 * 109.46844 * 269.97589 * 1 2 3 24 24 H 1.08999 * 109.47015 * 29.96886 * 1 2 3 25 25 H 1.08993 * 109.47061 * 149.97644 * 1 2 3 26 26 H 1.08005 * 126.77102 * 180.29208 * 5 4 3 27 27 H 1.09003 * 109.47324 * 139.67815 * 7 6 5 28 28 H 1.09004 * 109.47052 * 19.67974 * 7 6 5 29 29 H 1.00897 * 111.00127 * 56.04185 * 8 7 6 30 30 H 1.08997 * 109.46933 * 59.99775 * 9 8 7 31 31 H 1.08996 * 109.47325 * 299.99917 * 9 8 7 32 32 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 33 33 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 34 34 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6024 -0.6067 0.0043 6 6 2.3540 -1.1320 -0.0006 7 6 1.9591 -2.5863 0.0000 8 7 1.5976 -2.9961 -1.3636 9 6 1.2068 -4.4117 -1.4017 10 6 0.8376 -4.8003 -2.8347 11 1 0.0660 -4.1263 -3.2068 12 6 2.0299 -4.7022 -3.6924 13 7 2.9509 -4.6277 -4.3533 14 6 0.3122 -6.2371 -2.8542 15 6 -0.1658 -6.5784 -4.2420 16 1 -0.1010 -5.8442 -5.0314 17 6 -0.6802 -7.8303 -4.5056 18 7 -0.7589 -8.7245 -3.5444 19 14 -1.2656 -8.2559 -6.2276 20 1 -1.0704 -7.0854 -7.1202 21 1 -0.4848 -9.4083 -6.7451 22 1 -2.7065 -8.6128 -6.1866 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8903 -0.5133 25 1 -0.3633 -0.8897 -0.5142 26 1 4.5339 -1.1533 0.0094 27 1 1.1047 -2.7306 0.6613 28 1 2.7961 -3.1900 0.3509 29 1 2.3515 -2.8119 -2.0084 30 1 0.3473 -4.5689 -0.7501 31 1 2.0388 -5.0276 -1.0607 32 1 -0.5158 -6.3307 -2.1514 33 1 1.1115 -6.9202 -2.5670 34 1 -1.1211 -9.6051 -3.7298 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335970611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:27 Heat of formation + Delta-G solvation = 70.845887 kcal Electronic energy + Delta-G solvation = -17106.154684 eV Core-core repulsion = 14234.976440 eV Total energy + Delta-G solvation = -2871.178244 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.02059 -37.70141 -35.97209 -34.51468 -33.56309 -32.32043 -31.08058 -28.76019 -27.40992 -25.27878 -22.69880 -21.97258 -21.45821 -21.30539 -17.68011 -17.60537 -16.77742 -16.60705 -15.80497 -14.90619 -14.56725 -14.38274 -14.16899 -13.38605 -13.29714 -13.07787 -12.79996 -12.62681 -12.51993 -12.14568 -12.01305 -11.77131 -11.30662 -11.17555 -11.06371 -10.78627 -10.56888 -10.31558 -9.97243 -9.72763 -9.52445 -9.25050 -8.49895 -8.45904 -6.13103 -4.16180 1.35585 2.08421 3.13006 3.26425 3.34885 3.39536 3.51304 3.57189 4.02848 4.31314 4.40230 4.46800 4.69891 4.74645 5.00114 5.25277 5.31483 5.37587 5.40286 5.44272 5.57668 5.62510 5.71634 5.78172 6.06637 6.09167 6.27603 6.48300 6.94365 7.28473 7.39108 7.48271 7.82210 8.16649 8.19297 8.34719 8.88651 9.49688 10.97798 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.039101 B = 0.003914 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.916324 B = 7152.828722 C = 7318.507604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.038 3.962 3 N -0.374 5.374 4 O 0.093 5.907 5 C -0.058 4.058 6 C -0.194 4.194 7 C 0.134 3.866 8 N -0.688 5.688 9 C 0.067 3.933 10 C 0.007 3.993 11 H 0.111 0.889 12 C 0.240 3.760 13 N -0.476 5.476 14 C 0.032 3.968 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.282 1.282 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.213 0.787 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.340 0.660 30 H 0.094 0.906 31 H 0.037 0.963 32 H 0.040 0.960 33 H 0.024 0.976 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 13.083 10.847 17.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 N -0.080 5.080 4 O 0.030 5.970 5 C -0.140 4.140 6 C -0.198 4.198 7 C 0.005 3.995 8 N -0.319 5.319 9 C -0.063 4.063 10 C -0.015 4.015 11 H 0.129 0.871 12 C -0.077 4.077 13 N -0.153 5.153 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.208 1.208 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.230 0.770 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.158 0.842 30 H 0.112 0.888 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.261 14.564 9.938 18.140 hybrid contribution 0.229 -1.782 -0.689 1.924 sum 4.490 12.783 9.249 16.404 Atomic orbital electron populations 1.20215 0.85730 1.04524 1.03078 1.23538 0.99192 0.88043 1.01343 1.73848 0.89443 1.24369 1.20376 1.84812 1.21688 1.22893 1.67605 1.25836 1.00767 0.83856 1.03573 1.21255 0.92068 0.97713 1.08800 1.20120 1.00154 0.87405 0.91829 1.60584 1.44439 1.20491 1.06390 1.22111 1.00973 0.86259 0.96908 1.19331 0.89148 1.03740 0.89264 0.87078 1.29329 0.93913 0.91084 0.93325 1.81042 1.12996 1.11109 1.10140 1.19172 0.96859 0.86149 0.98480 1.21184 1.41587 0.98571 0.95127 0.92444 1.24951 0.95590 0.96318 0.97091 1.69946 1.45617 1.05420 1.32030 0.86539 0.78436 0.78533 0.84603 1.19667 1.20996 1.20790 0.90515 0.90836 0.88706 0.77006 0.89170 0.93798 0.84202 0.88777 0.94474 0.94137 0.95725 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.39 36.01 0.37 -0.36 16 2 C 0.04 0.45 7.33 -82.10 -0.60 -0.15 16 3 N -0.37 -4.86 12.07 33.42 0.40 -4.46 16 4 O 0.09 1.07 11.20 17.17 0.19 1.27 16 5 C -0.06 -0.53 12.26 29.73 0.36 -0.17 16 6 C -0.19 -2.03 5.84 -104.43 -0.61 -2.64 16 7 C 0.13 1.31 6.17 -4.97 -0.03 1.28 16 8 N -0.69 -8.24 6.49 -115.05 -0.75 -8.98 16 9 C 0.07 0.89 5.12 -3.82 -0.02 0.87 16 10 C 0.01 0.12 2.42 -93.41 -0.23 -0.10 16 11 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 12 C 0.24 4.69 12.98 -20.76 -0.27 4.42 16 13 N -0.48 -10.11 18.54 42.15 0.78 -9.33 16 14 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 15 C -0.53 -13.74 8.60 -34.44 -0.30 -14.04 16 16 H 0.06 1.50 7.59 -52.49 -0.40 1.11 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 19 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.21 1.15 8.06 -52.48 -0.42 0.72 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.34 4.39 7.80 -39.29 -0.31 4.09 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 306.60 15.07 4.62 4.62 Total: -1.00 -30.59 306.60 -5.06 -35.65 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -4.49 Total: -1.74 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.53 Total: -8.70 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 1.17 Total: -47.13 kcal Atomic # 8 Polarization: 1.07 SS G_CDS: 0.19 Total: 1.27 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.59 -5.06 -35.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335970611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.493 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds