Wall clock time and date at job start Thu Apr 9 2020 12:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30180 * 126.79677 * 2 1 4 4 O 1.20929 * 111.59877 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.56416 * 359.75929 * 4 3 2 6 6 C 1.35441 * 106.45011 * 0.38377 * 5 4 3 7 7 C 1.50704 * 128.00883 * 179.91188 * 6 5 4 8 8 N 1.46900 * 109.47086 * 259.67996 * 7 6 5 9 9 C 1.46904 * 110.99779 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.46858 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00128 * 10 9 8 12 12 C 1.47204 * 109.47042 * 64.99895 * 10 9 8 13 13 N 6.51548 * 102.80316 * 223.24967 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99851 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 H 1.09005 * 109.46844 * 269.97589 * 1 2 3 24 24 H 1.08999 * 109.47015 * 29.96886 * 1 2 3 25 25 H 1.08993 * 109.47061 * 149.97644 * 1 2 3 26 26 H 1.08005 * 126.77102 * 180.29208 * 5 4 3 27 27 H 1.09003 * 109.47324 * 139.67815 * 7 6 5 28 28 H 1.09004 * 109.47052 * 19.67974 * 7 6 5 29 29 H 1.00897 * 111.00127 * 56.04185 * 8 7 6 30 30 H 1.08997 * 109.46933 * 59.99775 * 9 8 7 31 31 H 1.08996 * 109.47325 * 299.99917 * 9 8 7 32 32 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 33 33 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 34 34 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6024 -0.6067 0.0043 6 6 2.3540 -1.1320 -0.0006 7 6 1.9591 -2.5863 0.0000 8 7 1.5976 -2.9961 -1.3636 9 6 1.2068 -4.4117 -1.4017 10 6 0.8376 -4.8003 -2.8347 11 1 0.0660 -4.1263 -3.2068 12 6 2.0299 -4.7022 -3.6924 13 7 2.9509 -4.6277 -4.3533 14 6 0.3122 -6.2371 -2.8542 15 6 -0.1658 -6.5784 -4.2420 16 1 -0.1010 -5.8442 -5.0314 17 6 -0.6802 -7.8303 -4.5056 18 7 -0.7589 -8.7245 -3.5444 19 14 -1.2656 -8.2559 -6.2276 20 1 -1.0704 -7.0854 -7.1202 21 1 -0.4848 -9.4083 -6.7451 22 1 -2.7065 -8.6128 -6.1866 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8903 -0.5133 25 1 -0.3633 -0.8897 -0.5142 26 1 4.5339 -1.1533 0.0094 27 1 1.1047 -2.7306 0.6613 28 1 2.7961 -3.1900 0.3509 29 1 2.3515 -2.8119 -2.0084 30 1 0.3473 -4.5689 -0.7501 31 1 2.0388 -5.0276 -1.0607 32 1 -0.5158 -6.3307 -2.1514 33 1 1.1115 -6.9202 -2.5670 34 1 -1.1211 -9.6051 -3.7298 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335970611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:27 Heat of formation + Delta-G solvation = 51.057154 kcal Electronic energy + Delta-G solvation = -17107.012788 eV Core-core repulsion = 14234.976440 eV Total energy + Delta-G solvation = -2872.036348 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.84733 -38.96127 -37.12847 -35.77414 -35.10216 -33.61023 -32.31446 -29.56114 -28.80209 -26.58551 -24.00396 -23.53943 -22.31419 -22.12116 -18.64398 -18.49994 -18.32350 -18.19444 -16.86360 -16.61141 -15.63149 -15.40484 -15.20276 -14.74172 -14.35197 -14.23310 -14.03862 -13.94005 -13.75017 -13.32452 -13.25061 -13.06291 -12.86601 -12.67450 -12.45697 -12.30491 -12.07094 -11.85952 -11.40979 -11.15916 -10.74652 -10.53992 -10.42258 -9.38170 -8.18718 -6.26104 0.59929 1.26589 1.39437 1.43112 1.52878 1.96249 1.98637 2.42141 2.43738 3.17007 3.20351 3.27976 3.45107 3.70283 3.97627 4.21031 4.23436 4.46994 4.63487 4.64776 4.76589 4.76794 4.83409 4.94867 5.00938 5.04231 5.08243 5.35403 5.50217 5.65821 5.81464 5.99543 6.23131 6.30584 6.77401 6.89521 7.37666 7.42546 8.92225 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.039101 B = 0.003914 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.916324 B = 7152.828722 C = 7318.507604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.027 3.973 3 N -0.406 5.406 4 O 0.081 5.919 5 C -0.044 4.044 6 C -0.209 4.209 7 C 0.138 3.862 8 N -0.690 5.690 9 C 0.080 3.920 10 C 0.018 3.982 11 H 0.121 0.879 12 C 0.251 3.749 13 N -0.507 5.507 14 C 0.038 3.962 15 C -0.538 4.538 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.922 5.922 19 Si 0.945 3.055 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.273 1.273 23 H 0.092 0.908 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.250 0.750 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.335 0.665 30 H 0.112 0.888 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.002 0.998 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.769 13.377 11.331 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.132 4.132 3 N -0.116 5.116 4 O 0.021 5.979 5 C -0.126 4.126 6 C -0.213 4.213 7 C 0.010 3.990 8 N -0.321 5.321 9 C -0.050 4.050 10 C -0.003 4.003 11 H 0.139 0.861 12 C -0.065 4.065 13 N -0.185 5.185 14 C -0.001 4.001 15 C -0.577 4.577 16 H 0.070 0.930 17 C -0.186 4.186 18 N -0.562 5.562 19 Si 0.772 3.228 20 H -0.195 1.195 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.110 0.890 24 H 0.089 0.911 25 H 0.114 0.886 26 H 0.266 0.734 27 H 0.119 0.881 28 H 0.078 0.922 29 H 0.152 0.848 30 H 0.130 0.870 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.021 0.979 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.252 14.873 10.428 18.655 hybrid contribution 0.261 -1.863 -0.825 2.054 sum 4.513 13.010 9.602 16.788 Atomic orbital electron populations 1.20270 0.84656 1.04436 1.04047 1.23988 1.00192 0.88341 1.00728 1.73848 0.90098 1.25464 1.22164 1.84773 1.21271 1.24109 1.67793 1.26542 1.01930 0.82999 1.01165 1.21379 0.92329 0.97751 1.09871 1.20157 1.01286 0.87064 0.90520 1.60543 1.44569 1.19237 1.07728 1.21944 1.01866 0.87216 0.93989 1.19252 0.88466 1.00932 0.91698 0.86102 1.29726 0.93824 0.90201 0.92739 1.81044 1.14198 1.12009 1.11233 1.18998 0.96032 0.88661 0.96425 1.21601 1.40898 0.98393 0.96762 0.92981 1.25667 0.96122 0.96597 1.00215 1.70027 1.46784 1.05796 1.33621 0.85691 0.78320 0.78012 0.80826 1.19539 1.21186 1.19837 0.89000 0.91068 0.88558 0.73433 0.88090 0.92179 0.84830 0.87034 0.94220 0.94234 0.97939 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 10.39 71.24 0.74 -0.60 16 2 C 0.03 0.59 7.33 43.58 0.32 0.91 16 3 N -0.41 -10.30 12.07 -49.55 -0.60 -10.90 16 4 O 0.08 1.79 11.20 71.62 0.80 2.59 16 5 C -0.04 -0.72 12.26 67.17 0.82 0.11 16 6 C -0.21 -3.91 5.84 -19.74 -0.12 -4.03 16 7 C 0.14 2.30 6.17 85.56 0.53 2.83 16 8 N -0.69 -14.80 6.49 -517.92 -3.36 -18.16 16 9 C 0.08 1.93 5.12 86.30 0.44 2.37 16 10 C 0.02 0.61 2.42 -12.60 -0.03 0.58 16 11 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 12 C 0.25 9.54 12.98 89.44 1.16 10.70 16 13 N -0.51 -21.17 18.54 20.01 0.37 -20.80 16 14 C 0.04 1.65 4.42 29.85 0.13 1.78 16 15 C -0.54 -27.85 8.60 25.60 0.22 -27.63 16 16 H 0.05 2.69 7.59 -2.91 -0.02 2.67 16 17 C 0.01 0.70 5.46 84.66 0.46 1.16 16 18 N -0.92 -51.85 13.29 21.45 0.28 -51.56 16 19 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.25 1.83 8.06 -2.91 -0.02 1.81 16 27 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.33 7.91 7.80 -89.70 -0.70 7.21 16 30 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 Total: -1.00 -64.92 306.60 4.62 -60.30 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 0.41 Total: 5.48 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 4.68 Total: -11.82 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -3.30 Total: -101.43 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: 0.80 Total: 2.59 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -64.92 4.62 -60.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335970611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.355 kcal (2) G-P(sol) polarization free energy of solvation -64.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds