Wall clock time and date at job start Thu Apr 9 2020 12:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47058 * 90.00047 * 9 7 5 11 11 H 1.48493 * 109.47227 * 209.99949 * 9 7 5 12 12 H 1.48503 * 109.47109 * 330.00183 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21507 * 120.00094 * 0.02562 * 14 13 3 16 16 C 1.48190 * 119.99893 * 180.02562 * 14 13 3 17 17 C 1.39034 * 119.68529 * 180.02562 * 16 14 13 18 18 C 1.39447 * 118.95541 * 179.97438 * 17 16 14 19 19 N 1.39192 * 120.83368 * 179.97438 * 18 17 16 20 20 C 1.39423 * 118.33604 * 0.02562 * 18 17 16 21 21 C 1.38231 * 119.26257 * 359.97438 * 20 18 17 22 22 N 1.31649 * 120.99056 * 359.72070 * 21 20 18 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 29 29 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 30 30 H 1.08001 * 120.52280 * 0.02562 * 17 16 14 31 31 H 0.97002 * 120.00180 * 0.02562 * 19 18 17 32 32 H 0.96998 * 120.00232 * 179.97438 * 19 18 17 33 33 H 1.07993 * 120.36852 * 180.02562 * 20 18 17 34 34 H 1.07996 * 119.50293 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5539 -0.3519 -0.7599 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3411 2.6318 0.4328 16 6 0.0434 3.3273 2.6331 17 6 -1.2142 3.9096 2.7450 18 6 -1.5672 4.5289 3.9435 19 7 -2.8157 5.1245 4.0981 20 6 -0.6379 4.5374 4.9828 21 6 0.5926 3.9366 4.7939 22 7 0.8946 3.3545 3.6523 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.8292 -0.0609 -2.9500 29 1 2.2719 2.1231 1.9979 30 1 -1.9071 3.8819 1.9170 31 1 -3.4530 5.1119 3.3669 32 1 -3.0488 5.5517 4.9372 33 1 -0.8770 5.0075 5.9252 34 1 1.3156 3.9413 5.5961 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349434578.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:30 Heat of formation + Delta-G solvation = -9.175707 kcal Electronic energy + Delta-G solvation = -17855.436974 eV Core-core repulsion = 14980.788733 eV Total energy + Delta-G solvation = -2874.648241 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.25760 -38.45597 -35.43917 -35.00465 -32.30160 -31.37493 -30.53739 -29.70689 -26.99140 -24.33163 -23.00731 -22.77018 -20.48850 -19.26003 -18.05776 -17.49349 -16.41005 -15.68212 -15.55567 -15.16272 -14.74307 -14.44956 -14.19965 -13.81143 -13.64207 -13.08221 -12.61305 -12.03818 -11.75993 -11.56809 -11.38085 -11.18200 -10.93127 -10.75906 -10.26790 -10.11089 -9.66605 -9.54303 -9.04026 -8.99105 -8.96581 -8.43444 -8.14781 -7.72420 -6.05722 -4.14228 0.96610 1.53811 3.30107 3.36426 3.38025 3.40059 3.50562 4.05405 4.32159 4.40927 4.61006 4.96205 5.04592 5.25748 5.29793 5.65091 5.74749 5.95996 6.01340 6.45276 6.52630 6.62057 6.72603 7.11846 7.13508 7.25290 7.42752 7.44110 7.51547 7.69589 7.80472 7.95556 8.12690 8.24173 8.78392 8.84609 9.19908 9.52701 10.99813 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.034376 B = 0.005370 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.328515 B = 5212.601946 C = 5732.993879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.267 3.733 4 H 0.050 0.950 5 C -0.531 4.531 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.682 5.682 14 C 0.551 3.449 15 O -0.545 6.545 16 C 0.133 3.867 17 C -0.194 4.194 18 C 0.241 3.759 19 N -0.866 5.866 20 C -0.245 4.245 21 C 0.137 3.863 22 N -0.498 5.498 23 H 0.037 0.963 24 H 0.023 0.977 25 H 0.050 0.950 26 H 0.032 0.968 27 H 0.100 0.900 28 H 0.264 0.736 29 H 0.400 0.600 30 H 0.143 0.857 31 H 0.402 0.598 32 H 0.400 0.600 33 H 0.131 0.869 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.968 7.394 13.507 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.165 3.835 4 H 0.068 0.932 5 C -0.570 4.570 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.328 5.328 14 C 0.334 3.666 15 O -0.424 6.424 16 C -0.005 4.005 17 C -0.220 4.220 18 C 0.128 3.872 19 N -0.406 5.406 20 C -0.271 4.271 21 C -0.022 4.022 22 N -0.213 5.213 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.234 0.766 30 H 0.161 0.839 31 H 0.231 0.769 32 H 0.229 0.771 33 H 0.148 0.852 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.612 6.819 12.467 16.616 hybrid contribution 0.030 0.595 0.536 0.802 sum -8.582 7.414 13.003 17.254 Atomic orbital electron populations 1.21846 0.98412 0.98053 1.01193 1.21937 0.92585 0.99712 1.02396 1.18873 0.94396 0.89275 0.80910 0.93173 1.21252 0.90661 1.38803 1.06259 0.91913 1.24876 0.98590 0.94847 0.95349 1.69895 1.35078 1.37796 1.09377 0.86447 0.84933 0.78473 0.77256 1.20560 1.21154 1.19826 1.46406 1.14165 1.53575 1.18681 1.17847 0.83456 0.79705 0.85596 1.90735 1.51900 1.60652 1.39069 1.21378 0.90271 0.95042 0.93804 1.21557 0.98916 1.03739 0.97824 1.17914 0.86092 0.89973 0.93189 1.42343 1.14598 1.64188 1.19463 1.21665 0.96202 1.09530 0.99713 1.22488 0.94088 0.91282 0.94377 1.67692 1.34476 1.18822 1.00325 0.94352 0.95821 0.93108 0.94894 0.88183 0.92634 0.76562 0.83898 0.76876 0.77136 0.85150 0.82539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.16 0.32 -2.86 16 2 C -0.13 -3.20 5.45 -26.73 -0.15 -3.35 16 3 C 0.27 6.98 2.24 -69.08 -0.15 6.82 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.47 8.73 -34.44 -0.30 -14.77 16 6 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.08 11.29 55.43 0.63 -24.45 16 9 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 13 N -0.68 -15.47 5.01 -55.77 -0.28 -15.75 16 14 C 0.55 11.97 6.38 -12.17 -0.08 11.89 16 15 O -0.54 -13.07 13.45 5.36 0.07 -13.00 16 16 C 0.13 2.39 6.75 -83.06 -0.56 1.83 16 17 C -0.19 -2.94 9.52 -38.84 -0.37 -3.31 16 18 C 0.24 2.82 6.81 -83.63 -0.57 2.25 16 19 N -0.87 -6.67 9.08 32.52 0.30 -6.38 16 20 C -0.25 -2.63 10.00 -39.14 -0.39 -3.02 16 21 C 0.14 1.70 11.17 -17.63 -0.20 1.50 16 22 N -0.50 -8.17 9.54 -9.89 -0.09 -8.26 16 23 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.10 2.74 5.95 -51.93 -0.31 2.43 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.40 8.51 7.87 -40.82 -0.32 8.19 16 30 H 0.14 2.15 7.64 -52.49 -0.40 1.75 16 31 H 0.40 2.63 8.86 -40.82 -0.36 2.27 16 32 H 0.40 2.06 8.86 -40.82 -0.36 1.70 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 288.76 15.07 4.35 4.35 Total: -1.00 -31.48 288.76 -6.67 -38.16 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -4.08 Total: 10.64 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.54 Total: -1.30 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.55 Total: -54.85 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.07 Total: -13.00 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.48 -6.67 -38.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349434578.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.982 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds