Wall clock time and date at job start Thu Apr 9 2020 12:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47221 * 2 1 4 4 H 1.09000 * 109.47240 * 54.99909 * 3 2 1 5 5 C 1.50694 * 109.47367 * 175.00114 * 3 2 1 6 6 H 1.08004 * 119.99874 * 119.99842 * 5 3 2 7 7 C 1.37875 * 119.99843 * 300.00436 * 5 3 2 8 8 N 1.31515 * 119.99823 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00215 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47156 * 89.99993 * 9 7 5 11 11 H 1.48505 * 109.47209 * 209.99995 * 9 7 5 12 12 H 1.48497 * 109.47254 * 330.00223 * 9 7 5 13 13 N 1.46500 * 109.47307 * 295.00582 * 3 2 1 14 14 C 1.34778 * 120.00241 * 84.99435 * 13 3 2 15 15 O 1.21506 * 120.00068 * 0.02562 * 14 13 3 16 16 C 1.48186 * 120.00007 * 179.97438 * 14 13 3 17 17 C 1.39032 * 119.69045 * 179.97438 * 16 14 13 18 18 C 1.39452 * 118.95897 * 180.02562 * 17 16 14 19 19 N 1.39182 * 120.83276 * 179.97438 * 18 17 16 20 20 C 1.39417 * 118.33197 * 359.97438 * 18 17 16 21 21 C 1.38234 * 119.26731 * 0.02562 * 20 18 17 22 22 N 1.31642 * 120.99280 * 359.97438 * 21 20 18 23 23 H 1.08999 * 109.46806 * 299.99571 * 1 2 3 24 24 H 1.08994 * 109.47095 * 60.00010 * 1 2 3 25 25 H 1.08996 * 109.46943 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46500 * 240.00103 * 2 1 3 27 27 H 1.08994 * 109.46891 * 120.00504 * 2 1 3 28 28 H 0.96998 * 120.00200 * 179.97438 * 8 7 5 29 29 H 0.97005 * 119.99711 * 264.99999 * 13 3 2 30 30 H 1.07999 * 120.51724 * 0.02562 * 17 16 14 31 31 H 0.97002 * 120.00172 * 0.02562 * 19 18 17 32 32 H 0.97001 * 119.99970 * 179.97438 * 19 18 17 33 33 H 1.08002 * 120.37117 * 180.02562 * 20 18 17 34 34 H 1.08000 * 119.50141 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 5.4540 0.8795 1.3357 9 14 3.0964 0.1099 2.5706 10 1 2.8745 -1.3262 2.2644 11 1 3.7943 0.2357 3.8754 12 1 1.7882 0.8091 2.6395 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3668 15 8 -0.3407 2.6326 -0.4323 16 6 0.0433 3.3275 -2.6328 17 6 -1.2143 3.9097 -2.7447 18 6 -1.5674 4.5292 -3.9431 19 7 -2.8162 5.1238 -4.0979 20 6 -0.6380 4.5379 -4.9823 21 6 0.5925 3.9371 -4.7935 22 7 0.8968 3.3600 -3.6501 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 5.8771 0.4817 2.1126 29 1 2.2719 2.1232 -1.9978 30 1 -1.9068 3.8827 -1.9164 31 1 -3.4535 5.1110 -3.3667 32 1 -3.0490 5.5517 -4.9368 33 1 -0.8768 5.0087 -5.9245 34 1 1.3155 3.9420 -5.5958 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349434579.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:31 Heat of formation + Delta-G solvation = -27.144572 kcal Electronic energy + Delta-G solvation = -17937.033559 eV Core-core repulsion = 15061.606130 eV Total energy + Delta-G solvation = -2875.427430 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.53578 -40.12515 -37.13080 -36.36418 -34.38546 -33.33429 -32.07745 -30.68429 -29.43910 -25.80115 -24.40652 -24.01971 -22.45356 -21.25618 -19.69258 -18.44090 -18.31494 -17.43331 -16.98112 -16.61293 -16.43516 -16.05574 -15.53075 -15.22384 -14.90515 -14.77922 -14.68082 -14.03302 -13.73653 -13.64280 -12.97381 -12.81442 -12.72545 -12.52948 -12.38657 -11.84984 -11.42950 -11.25428 -11.07375 -10.84860 -10.40136 -10.17910 -9.75364 -8.98197 -8.36793 -6.43036 -0.20704 0.53889 1.28454 1.35986 1.46788 1.90462 2.27442 2.31458 2.87023 2.97499 3.04880 3.36765 3.87184 4.03843 4.22850 4.24327 4.31409 4.41333 4.57116 4.76130 4.81293 4.92225 4.99074 5.01985 5.11086 5.22733 5.40293 5.50542 5.62501 5.66357 6.14293 6.35528 6.57964 6.77368 6.88131 7.08120 7.19905 7.39489 8.78778 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.038316 B = 0.005621 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.583119 B = 4980.170684 C = 5413.869821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 C 0.247 3.753 4 H 0.027 0.973 5 C -0.536 4.536 6 H 0.051 0.949 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.939 3.061 10 H -0.257 1.257 11 H -0.291 1.291 12 H -0.258 1.258 13 N -0.681 5.681 14 C 0.554 3.446 15 O -0.572 6.572 16 C 0.101 3.899 17 C -0.201 4.201 18 C 0.247 3.753 19 N -0.846 5.846 20 C -0.225 4.225 21 C 0.129 3.871 22 N -0.528 5.528 23 H 0.041 0.959 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.271 0.729 29 H 0.409 0.591 30 H 0.138 0.862 31 H 0.410 0.590 32 H 0.417 0.583 33 H 0.174 0.826 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.666 6.780 -14.041 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.142 3.858 4 H 0.044 0.956 5 C -0.574 4.574 6 H 0.070 0.930 7 C -0.170 4.170 8 N -0.573 5.573 9 Si 0.766 3.234 10 H -0.183 1.183 11 H -0.218 1.218 12 H -0.183 1.183 13 N -0.328 5.328 14 C 0.340 3.660 15 O -0.452 6.452 16 C -0.035 4.035 17 C -0.228 4.228 18 C 0.131 3.869 19 N -0.386 5.386 20 C -0.250 4.250 21 C -0.029 4.029 22 N -0.243 5.243 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.245 0.755 30 H 0.156 0.844 31 H 0.240 0.760 32 H 0.249 0.751 33 H 0.192 0.808 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -16.205 6.287 -13.127 21.782 hybrid contribution -0.622 0.176 0.479 0.805 sum -16.828 6.463 -12.648 22.021 Atomic orbital electron populations 1.21762 0.95079 1.00742 1.01524 1.22204 0.95993 0.98195 1.01130 1.18903 0.93465 0.89894 0.83520 0.95551 1.21262 0.90245 1.38843 1.07079 0.93036 1.25573 0.95839 0.95728 0.99832 1.69984 1.10343 1.46073 1.30880 0.85995 0.79312 0.80019 0.78118 1.18267 1.21790 1.18282 1.45935 1.15374 1.54375 1.17143 1.18415 0.82097 0.78543 0.86991 1.90690 1.52468 1.61537 1.40550 1.20699 0.92004 0.97937 0.92904 1.21520 0.97802 1.04226 0.99238 1.17937 0.87588 0.89244 0.92112 1.42324 1.13053 1.62629 1.20623 1.22097 0.94769 1.07363 1.00795 1.23095 0.95696 0.90487 0.93617 1.67587 1.34844 1.20529 1.01375 0.93969 0.93282 0.91939 0.91558 0.93326 0.91999 0.75482 0.84449 0.75989 0.75115 0.80846 0.79371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.42 8.51 71.99 0.61 -4.80 16 2 C -0.14 -6.23 5.11 30.60 0.16 -6.08 16 3 C 0.25 12.46 1.83 44.24 0.08 12.54 16 4 H 0.03 1.46 6.63 -2.39 -0.02 1.45 16 5 C -0.54 -30.92 9.31 25.60 0.24 -30.68 16 6 H 0.05 3.20 7.98 -2.91 -0.02 3.18 16 7 C 0.03 1.75 5.45 84.65 0.46 2.21 16 8 N -0.93 -57.63 13.96 21.45 0.30 -57.33 16 9 Si 0.94 45.80 24.41 68.60 1.67 47.47 16 10 H -0.26 -11.73 6.83 99.48 0.68 -11.05 16 11 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 12 H -0.26 -12.46 6.53 99.48 0.65 -11.81 16 13 N -0.68 -30.56 5.01 -448.67 -2.25 -32.80 16 14 C 0.55 23.32 6.38 86.89 0.55 23.88 16 15 O -0.57 -26.28 13.46 -3.73 -0.05 -26.33 16 16 C 0.10 3.47 6.75 41.83 0.28 3.75 16 17 C -0.20 -5.56 9.52 22.75 0.22 -5.34 16 18 C 0.25 4.72 6.81 38.55 0.26 4.99 16 19 N -0.85 -8.92 9.08 -51.03 -0.46 -9.38 16 20 C -0.22 -3.69 10.00 22.55 0.23 -3.47 16 21 C 0.13 2.77 11.17 84.72 0.95 3.72 16 22 N -0.53 -16.42 9.54 -185.21 -1.77 -18.18 16 23 H 0.04 1.78 7.84 -2.39 -0.02 1.76 16 24 H 0.05 2.00 5.64 -2.39 -0.01 1.98 16 25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 27 H 0.05 2.26 3.22 -2.39 -0.01 2.26 16 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.41 17.70 7.87 -92.70 -0.73 16.97 16 30 H 0.14 3.83 7.64 -2.91 -0.02 3.81 16 31 H 0.41 3.57 8.86 -92.71 -0.82 2.75 16 32 H 0.42 1.96 8.86 -92.71 -0.82 1.14 16 33 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 34 H 0.19 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -72.94 282.00 0.19 -72.75 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -1.29 Total: 23.10 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 4.04 Total: 0.70 kcal Atomic # 7 Polarization: -113.53 SS G_CDS: -4.18 Total: -117.70 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.05 Total: -26.33 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.67 Total: 47.47 kcal Total: -72.94 0.19 -72.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349434579.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.609 kcal (2) G-P(sol) polarization free energy of solvation -72.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds