Wall clock time and date at job start Thu Apr 9 2020 12:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38207 * 119.94798 * 2 1 4 4 N 1.32245 * 120.18756 * 180.02562 * 3 2 1 5 5 C 1.31949 * 120.08790 * 359.96770 * 4 3 2 6 6 C 1.50697 * 120.05279 * 179.97438 * 5 4 3 7 7 C 1.39296 * 119.89272 * 0.02562 * 5 4 3 8 8 N 1.39002 * 120.08961 * 179.97438 * 7 5 4 9 9 C 1.47961 * 111.00189 * 179.97438 * 8 7 5 10 10 C 1.53934 * 86.18427 * 222.41772 * 9 8 7 11 11 O 1.42895 * 113.73076 * 269.25870 * 10 9 8 12 12 C 1.50696 * 113.73266 * 138.07361 * 10 9 8 13 13 H 1.07999 * 120.00319 * 0.02562 * 12 10 9 14 14 C 1.37885 * 119.99717 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47958 * 110.99959 * 80.64106 * 8 7 5 21 21 N 1.32220 * 119.94600 * 180.24349 * 2 1 3 22 22 H 1.09002 * 109.47290 * 90.00392 * 1 2 3 23 23 H 1.09001 * 109.47262 * 210.00615 * 1 2 3 24 24 H 1.09001 * 109.47503 * 330.00689 * 1 2 3 25 25 H 1.08000 * 119.90434 * 0.02562 * 3 2 1 26 26 H 1.08988 * 109.47471 * 270.02411 * 6 5 4 27 27 H 1.09006 * 109.46870 * 30.02789 * 6 5 4 28 28 H 1.09004 * 109.47210 * 150.02089 * 6 5 4 29 29 H 1.08996 * 113.76309 * 108.09210 * 9 8 7 30 30 H 1.09008 * 113.85816 * 336.74725 * 9 8 7 31 31 H 0.96697 * 114.00066 * 178.10080 * 11 10 9 32 32 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 33 33 H 1.08993 * 113.76569 * 23.26530 * 20 8 7 34 34 H 1.09005 * 113.75789 * 251.89812 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1975 0.0000 4 7 3.5194 1.2031 -0.0005 5 6 4.1856 0.0641 -0.0004 6 6 5.6926 0.0714 -0.0015 7 6 3.4938 -1.1449 -0.0002 8 7 4.1915 -2.3471 -0.0006 9 6 3.2631 -3.4991 0.0002 10 6 4.2110 -4.1308 1.0356 11 8 5.2414 -4.9342 0.4570 12 6 3.4976 -4.8184 2.1710 13 1 2.4181 -4.8335 2.2003 14 6 4.2230 -5.4291 3.1719 15 7 3.6005 -6.0297 4.1626 16 14 6.0902 -5.4035 3.1208 17 1 6.5815 -6.5930 2.3800 18 1 6.5497 -4.1688 2.4355 19 1 6.6236 -5.4282 4.5065 20 6 4.6525 -2.6930 1.3621 21 7 2.1670 -1.1457 -0.0049 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 1.6545 2.1314 0.0004 26 1 6.0551 0.0730 -1.0294 27 1 6.0520 0.9632 0.5120 28 1 6.0606 -0.8168 0.5122 29 1 3.2279 -4.0356 -0.9479 30 1 2.2735 -3.2676 0.3945 31 1 5.8564 -5.3094 1.1020 32 1 4.1109 -6.4596 4.8665 33 1 4.0700 -2.2242 2.1551 34 1 5.7281 -2.5854 1.5024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349778270.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:33 Heat of formation + Delta-G solvation = 31.658973 kcal Electronic energy + Delta-G solvation = -18524.130405 eV Core-core repulsion = 15651.252889 eV Total energy + Delta-G solvation = -2872.877516 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.70416 -40.76111 -37.02380 -35.91897 -34.58599 -33.65746 -31.22173 -29.86687 -27.40620 -27.13674 -26.33574 -23.92316 -22.71712 -21.03388 -19.58665 -18.96070 -18.16606 -17.77345 -16.95936 -16.73467 -16.08704 -15.52376 -15.03947 -14.79371 -14.60680 -14.33562 -14.12692 -13.82809 -13.72745 -13.38147 -13.21724 -13.07605 -12.85360 -12.73871 -12.47105 -12.42807 -12.05043 -11.89609 -11.28386 -11.03385 -10.75893 -10.56651 -10.05826 -9.37055 -8.47252 -6.59224 -0.26469 0.08410 1.21257 1.26169 1.36932 2.14430 2.40947 2.66712 2.75611 3.09033 3.19391 3.32851 3.59449 3.83490 3.87339 4.00394 4.20700 4.29417 4.38071 4.57108 4.70170 4.71602 4.73033 4.76374 4.83189 4.91656 5.03357 5.06704 5.19074 5.24458 5.41975 5.94716 6.03353 6.33770 6.46551 6.68864 6.80125 7.08352 8.68749 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028713 B = 0.007331 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.926178 B = 3818.362092 C = 4281.717808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.082 3.918 3 C 0.032 3.968 4 N -0.439 5.439 5 C 0.063 3.937 6 C -0.088 4.088 7 C 0.215 3.785 8 N -0.421 5.421 9 C 0.042 3.958 10 C 0.193 3.807 11 O -0.552 6.552 12 C -0.549 4.549 13 H 0.045 0.955 14 C 0.023 3.977 15 N -0.926 5.926 16 Si 0.922 3.078 17 H -0.250 1.250 18 H -0.230 1.230 19 H -0.281 1.281 20 C 0.000 4.000 21 N -0.495 5.495 22 H 0.097 0.903 23 H 0.066 0.934 24 H 0.112 0.888 25 H 0.209 0.791 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.353 0.647 32 H 0.274 0.726 33 H 0.065 0.935 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 13.916 -6.947 15.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.060 4.060 3 C -0.129 4.129 4 N -0.153 5.153 5 C -0.080 4.080 6 C -0.146 4.146 7 C -0.018 4.018 8 N -0.140 5.140 9 C -0.086 4.086 10 C 0.152 3.848 11 O -0.363 6.363 12 C -0.587 4.587 13 H 0.064 0.936 14 C -0.177 4.177 15 N -0.564 5.564 16 Si 0.746 3.254 17 H -0.175 1.175 18 H -0.154 1.154 19 H -0.207 1.207 20 C -0.127 4.127 21 N -0.215 5.215 22 H 0.115 0.885 23 H 0.085 0.915 24 H 0.131 0.869 25 H 0.226 0.774 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.206 0.794 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.528 14.043 -7.851 16.097 hybrid contribution 0.051 -0.726 1.370 1.551 sum 0.579 13.316 -6.481 14.821 Atomic orbital electron populations 1.20806 0.85096 1.04840 1.04570 1.22890 1.00076 0.88580 0.94455 1.24076 0.90105 1.00247 0.98423 1.68267 1.09672 1.28293 1.09083 1.22124 0.99449 0.87289 0.99124 1.20627 0.86098 1.03789 1.04070 1.21603 0.89343 0.94435 0.96409 1.66138 1.24614 0.98707 1.24541 1.23895 0.96084 0.88801 0.99811 1.20479 0.85941 0.86938 0.91421 1.86478 1.43160 1.68784 1.37880 1.21464 0.94297 1.36382 1.06529 0.93630 1.25924 1.04335 0.93277 0.94213 1.70017 1.38459 1.35562 1.12357 0.86282 0.79245 0.81364 0.78544 1.17500 1.15370 1.20733 1.24917 1.01895 0.98344 0.87572 1.68261 1.08251 1.31806 1.13147 0.88471 0.91541 0.86943 0.77446 0.89187 0.89296 0.90709 0.89569 0.88801 0.79441 0.91703 0.91656 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 10.19 71.24 0.73 -1.04 16 2 C 0.08 2.27 6.78 42.49 0.29 2.55 16 3 C 0.03 0.78 10.86 84.62 0.92 1.70 16 4 N -0.44 -13.02 10.41 -182.77 -1.90 -14.92 16 5 C 0.06 2.05 6.78 42.79 0.29 2.34 16 6 C -0.09 -2.38 9.94 71.23 0.71 -1.67 16 7 C 0.22 8.04 5.87 133.02 0.78 8.82 16 8 N -0.42 -16.93 5.60 -715.52 -4.01 -20.94 16 9 C 0.04 1.87 7.04 86.40 0.61 2.48 16 10 C 0.19 9.24 1.05 -10.91 -0.01 9.23 16 11 O -0.55 -25.93 13.32 -148.98 -1.98 -27.92 16 12 C -0.55 -30.86 9.20 25.60 0.24 -30.63 16 13 H 0.05 2.86 8.06 -2.91 -0.02 2.83 16 14 C 0.02 1.28 5.47 84.66 0.46 1.75 16 15 N -0.93 -55.19 13.96 21.45 0.30 -54.89 16 16 Si 0.92 39.69 24.34 68.60 1.67 41.35 16 17 H -0.25 -10.10 7.06 99.48 0.70 -9.40 16 18 H -0.23 -8.89 5.28 99.48 0.52 -8.36 16 19 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 20 C 0.00 -0.02 5.46 86.39 0.47 0.45 16 21 N -0.50 -17.97 8.32 -180.74 -1.50 -19.47 16 22 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.11 1.30 8.08 -2.39 -0.02 1.28 16 25 H 0.21 3.06 8.06 -2.91 -0.02 3.04 16 26 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.09 2.05 8.14 -2.38 -0.02 2.04 16 28 H 0.07 2.13 5.78 -2.39 -0.01 2.11 16 29 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 30 H 0.09 4.31 6.65 -2.38 -0.02 4.29 16 31 H 0.35 15.47 3.31 -74.06 -0.25 15.23 16 32 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.07 2.90 7.86 -2.39 -0.02 2.88 16 34 H 0.10 3.89 6.21 -2.38 -0.01 3.88 16 Total: -1.00 -67.90 277.06 -1.26 -69.16 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.69 Total: 31.66 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 5.48 Total: -4.03 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -7.12 Total: -110.22 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -1.98 Total: -27.92 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 1.67 Total: 41.35 kcal Total: -67.90 -1.26 -69.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349778270.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.815 kcal (2) G-P(sol) polarization free energy of solvation -67.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds