Wall clock time and date at job start Thu Apr 9 2020 12:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47473 * 2 1 4 4 N 1.46896 * 109.46991 * 239.99669 * 2 1 3 5 5 C 1.50698 * 109.47083 * 119.99916 * 2 1 3 6 6 O 1.21271 * 120.00452 * 334.99934 * 5 2 1 7 7 N 1.34782 * 120.00232 * 155.00054 * 5 2 1 8 8 C 1.39263 * 120.00373 * 185.58715 * 7 5 2 9 9 C 1.39677 * 119.57183 * 18.83502 * 8 7 5 10 10 C 1.38654 * 119.49249 * 180.02562 * 9 8 7 11 11 C 1.38349 * 118.67260 * 359.73949 * 10 9 8 12 12 C 1.40580 * 119.12884 * 0.50416 * 11 10 9 13 13 C 1.41335 * 119.78950 * 179.76489 * 12 11 10 14 14 H 1.07996 * 120.00188 * 8.66289 * 13 12 11 15 15 C 1.40029 * 119.99792 * 188.66337 * 13 12 11 16 16 N 1.30750 * 119.99701 * 195.97567 * 15 13 12 17 17 Si 1.86804 * 120.00316 * 15.97355 * 15 13 12 18 18 H 1.48500 * 109.46996 * 270.00042 * 17 15 13 19 19 H 1.48493 * 109.46898 * 30.00134 * 17 15 13 20 20 H 1.48503 * 109.47028 * 150.00163 * 17 15 13 21 21 N 1.31904 * 119.57525 * 198.86146 * 8 7 5 22 22 H 1.09004 * 109.46615 * 300.00126 * 1 2 3 23 23 H 1.08997 * 109.46905 * 59.99671 * 1 2 3 24 24 H 1.08990 * 109.47450 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47440 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46689 * 300.00212 * 3 2 1 27 27 H 1.08994 * 109.47350 * 59.99489 * 3 2 1 28 28 H 1.00904 * 111.00478 * 176.04584 * 4 2 1 29 29 H 1.00899 * 111.00292 * 300.00232 * 4 2 1 30 30 H 0.97001 * 119.99568 * 5.57557 * 7 5 2 31 31 H 1.07994 * 120.25278 * 0.02562 * 9 8 7 32 32 H 1.08002 * 120.66660 * 180.02562 * 10 9 8 33 33 H 1.07999 * 120.43797 * 180.24360 * 11 10 9 34 34 H 0.96992 * 119.99806 * 354.93152 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0323 -0.7104 1.2305 6 8 1.3371 -0.7705 2.2223 7 7 3.2543 -1.2790 1.2287 8 6 3.6726 -2.0342 2.3215 9 6 2.7250 -2.5303 3.2198 10 6 3.1433 -3.2815 4.3075 11 6 4.4962 -3.5224 4.4670 12 6 5.4009 -2.9912 3.5312 13 6 6.7865 -3.2245 3.6835 14 1 7.1380 -3.9208 4.4304 15 6 7.7035 -2.5528 2.8657 16 7 8.9363 -2.9796 2.7782 17 14 7.1656 -1.0471 1.8998 18 1 6.6631 -1.4674 0.5671 19 1 6.0847 -0.3457 2.6378 20 1 8.3217 -0.1312 1.7265 21 7 4.9584 -2.2713 2.4952 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.0262 -0.6502 -1.2559 29 1 1.6961 -1.6480 -1.2227 30 1 3.8424 -1.1623 0.4662 31 1 1.6746 -2.3303 3.0683 32 1 2.4268 -3.6747 5.0136 33 1 4.8531 -4.1074 5.3018 34 1 9.2353 -3.7156 3.3347 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349892691.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:37 Heat of formation + Delta-G solvation = -13.206948 kcal Electronic energy + Delta-G solvation = -18304.850330 eV Core-core repulsion = 15430.027281 eV Total energy + Delta-G solvation = -2874.823049 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.55389 -38.42744 -36.01839 -34.70346 -33.51981 -31.13752 -29.80259 -29.48362 -27.42237 -25.49401 -23.93454 -21.86279 -21.08759 -19.40167 -18.34540 -17.65914 -16.70705 -15.98684 -15.26939 -14.98164 -14.90552 -14.36906 -14.16931 -13.64133 -13.15547 -12.76462 -12.40334 -12.32793 -12.24710 -12.03992 -11.97116 -11.88423 -11.29970 -11.21181 -10.91735 -10.40225 -10.13855 -10.00551 -9.69288 -9.14376 -8.69856 -8.55603 -7.97136 -7.48462 -7.32864 -4.81168 2.12720 2.61386 2.93419 3.15725 3.41319 3.55357 3.84612 4.23562 4.27514 4.53020 4.56210 4.75204 4.90418 5.48380 5.54690 5.61097 5.68975 5.72382 5.80837 5.97646 6.00951 6.09005 6.40606 6.47225 6.49843 6.71942 7.06821 7.10898 7.14381 7.38869 7.51295 7.54742 7.71778 8.05959 8.22121 8.36407 8.60115 9.37681 9.92430 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026251 B = 0.007784 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.353369 B = 3596.358892 C = 4406.013367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.105 3.895 3 C -0.139 4.139 4 N -0.830 5.830 5 C 0.483 3.517 6 O -0.509 6.509 7 N -0.656 5.656 8 C 0.381 3.619 9 C -0.311 4.311 10 C -0.037 4.037 11 C -0.277 4.277 12 C 0.273 3.727 13 C -0.480 4.480 14 H 0.084 0.916 15 C 0.049 3.951 16 N -0.802 5.802 17 Si 1.144 2.856 18 H -0.288 1.288 19 H -0.281 1.281 20 H -0.325 1.325 21 N -0.595 5.595 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.344 0.656 29 H 0.349 0.651 30 H 0.402 0.598 31 H 0.137 0.863 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.679 5.278 -6.679 13.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.008 3.992 3 C -0.197 4.197 4 N -0.363 5.363 5 C 0.267 3.733 6 O -0.382 6.382 7 N -0.302 5.302 8 C 0.149 3.851 9 C -0.336 4.336 10 C -0.061 4.061 11 C -0.299 4.299 12 C 0.149 3.851 13 C -0.512 4.512 14 H 0.102 0.898 15 C -0.173 4.173 16 N -0.424 5.424 17 Si 0.977 3.023 18 H -0.216 1.216 19 H -0.209 1.209 20 H -0.258 1.258 21 N -0.320 5.320 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.158 0.842 29 H 0.162 0.838 30 H 0.238 0.762 31 H 0.154 0.846 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.439 7.095 -7.996 14.941 hybrid contribution -0.034 -2.395 2.199 3.252 sum -10.473 4.700 -5.797 12.860 Atomic orbital electron populations 1.21636 0.90828 1.02880 1.02883 1.21147 0.97714 0.95285 0.85027 1.21833 1.01557 0.92881 1.03458 1.58956 1.16628 1.21921 1.38802 1.21963 0.81020 0.79149 0.91166 1.90613 1.56268 1.56943 1.34336 1.43386 1.16989 1.50165 1.19613 1.18121 0.89848 0.90066 0.87016 1.21491 1.00003 1.11413 1.00699 1.20921 0.95128 0.94531 0.95515 1.21623 0.93416 1.11414 1.03441 1.18191 0.93985 0.86911 0.85973 1.20671 0.90047 1.22451 1.18055 0.89771 1.27656 0.92496 1.01914 0.95266 1.70612 1.18435 1.22958 1.30356 0.82129 0.71784 0.72416 0.75989 1.21570 1.20857 1.25762 1.66195 1.13159 1.25976 1.26636 0.90877 0.90969 0.92343 0.92026 0.90291 0.91172 0.84177 0.83757 0.76239 0.84581 0.87622 0.87652 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 8.30 37.16 0.31 -1.04 16 2 C 0.10 1.24 1.16 -132.76 -0.15 1.09 16 3 C -0.14 -1.48 8.72 37.16 0.32 -1.15 16 4 N -0.83 -8.45 8.71 -0.20 0.00 -8.45 16 5 C 0.48 7.95 6.51 -10.98 -0.07 7.88 16 6 O -0.51 -9.98 12.89 5.57 0.07 -9.90 16 7 N -0.66 -11.94 5.27 -11.40 -0.06 -12.00 16 8 C 0.38 8.73 7.51 -154.98 -1.16 7.56 16 9 C -0.31 -7.08 8.83 -38.89 -0.34 -7.42 16 10 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 11 C -0.28 -6.65 9.83 -38.66 -0.38 -7.03 16 12 C 0.27 7.20 6.27 -84.99 -0.53 6.66 16 13 C -0.48 -13.03 9.51 -37.73 -0.36 -13.38 16 14 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 15 C 0.05 1.31 5.51 -17.34 -0.10 1.21 16 16 N -0.80 -21.54 13.65 55.55 0.76 -20.79 16 17 Si 1.14 27.32 25.93 -169.99 -4.41 22.91 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.93 6.55 56.52 0.37 -6.56 16 20 H -0.33 -7.63 7.11 56.52 0.40 -7.22 16 21 N -0.59 -15.02 5.07 -10.25 -0.05 -15.07 16 22 H 0.07 0.83 7.87 -51.93 -0.41 0.43 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.34 3.31 7.62 -39.29 -0.30 3.02 16 29 H 0.35 3.42 8.99 -39.29 -0.35 3.07 16 30 H 0.40 6.40 7.40 -40.82 -0.30 6.10 16 31 H 0.14 3.03 5.33 -52.51 -0.28 2.75 16 32 H 0.11 2.00 8.06 -52.49 -0.42 1.57 16 33 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 34 H 0.28 7.33 8.72 -40.82 -0.36 6.97 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -30.29 285.41 -6.47 -36.76 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.21 Total: 9.07 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.87 Total: -6.83 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.64 Total: -56.31 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 27.32 SS G_CDS: -4.41 Total: 22.91 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.29 -6.47 -36.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349892691.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.549 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds