Wall clock time and date at job start Thu Apr 9 2020 12:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47473 * 2 1 4 4 N 1.46896 * 109.46991 * 239.99669 * 2 1 3 5 5 C 1.50698 * 109.47083 * 119.99916 * 2 1 3 6 6 O 1.21271 * 120.00452 * 334.99934 * 5 2 1 7 7 N 1.34782 * 120.00232 * 155.00054 * 5 2 1 8 8 C 1.39263 * 120.00373 * 185.58715 * 7 5 2 9 9 C 1.39677 * 119.57183 * 18.83502 * 8 7 5 10 10 C 1.38654 * 119.49249 * 180.02562 * 9 8 7 11 11 C 1.38349 * 118.67260 * 359.73949 * 10 9 8 12 12 C 1.40580 * 119.12884 * 0.50416 * 11 10 9 13 13 C 1.41335 * 119.78950 * 179.76489 * 12 11 10 14 14 H 1.07996 * 120.00188 * 8.66289 * 13 12 11 15 15 C 1.40029 * 119.99792 * 188.66337 * 13 12 11 16 16 N 1.30750 * 119.99701 * 195.97567 * 15 13 12 17 17 Si 1.86804 * 120.00316 * 15.97355 * 15 13 12 18 18 H 1.48500 * 109.46996 * 270.00042 * 17 15 13 19 19 H 1.48493 * 109.46898 * 30.00134 * 17 15 13 20 20 H 1.48503 * 109.47028 * 150.00163 * 17 15 13 21 21 N 1.31904 * 119.57525 * 198.86146 * 8 7 5 22 22 H 1.09004 * 109.46615 * 300.00126 * 1 2 3 23 23 H 1.08997 * 109.46905 * 59.99671 * 1 2 3 24 24 H 1.08990 * 109.47450 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47440 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46689 * 300.00212 * 3 2 1 27 27 H 1.08994 * 109.47350 * 59.99489 * 3 2 1 28 28 H 1.00904 * 111.00478 * 176.04584 * 4 2 1 29 29 H 1.00899 * 111.00292 * 300.00232 * 4 2 1 30 30 H 0.97001 * 119.99568 * 5.57557 * 7 5 2 31 31 H 1.07994 * 120.25278 * 0.02562 * 9 8 7 32 32 H 1.08002 * 120.66660 * 180.02562 * 10 9 8 33 33 H 1.07999 * 120.43797 * 180.24360 * 11 10 9 34 34 H 0.96992 * 119.99806 * 354.93152 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0323 -0.7104 1.2305 6 8 1.3371 -0.7705 2.2223 7 7 3.2543 -1.2790 1.2287 8 6 3.6726 -2.0342 2.3215 9 6 2.7250 -2.5303 3.2198 10 6 3.1433 -3.2815 4.3075 11 6 4.4962 -3.5224 4.4670 12 6 5.4009 -2.9912 3.5312 13 6 6.7865 -3.2245 3.6835 14 1 7.1380 -3.9208 4.4304 15 6 7.7035 -2.5528 2.8657 16 7 8.9363 -2.9796 2.7782 17 14 7.1656 -1.0471 1.8998 18 1 6.6631 -1.4674 0.5671 19 1 6.0847 -0.3457 2.6378 20 1 8.3217 -0.1312 1.7265 21 7 4.9584 -2.2713 2.4952 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.0262 -0.6502 -1.2559 29 1 1.6961 -1.6480 -1.2227 30 1 3.8424 -1.1623 0.4662 31 1 1.6746 -2.3303 3.0683 32 1 2.4268 -3.6747 5.0136 33 1 4.8531 -4.1074 5.3018 34 1 9.2353 -3.7156 3.3347 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349892691.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:36 Heat of formation + Delta-G solvation = -34.548498 kcal Electronic energy + Delta-G solvation = -18305.775769 eV Core-core repulsion = 15430.027281 eV Total energy + Delta-G solvation = -2875.748488 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.98446 -40.14354 -37.12435 -36.37039 -35.36721 -33.00779 -31.37649 -30.57038 -28.27049 -27.39645 -25.35038 -23.67110 -22.66604 -20.91948 -20.11454 -19.02589 -18.18981 -17.06827 -16.92562 -16.66967 -16.20505 -15.87125 -15.68352 -15.09046 -14.90724 -14.44953 -14.29038 -13.79099 -13.36623 -13.28466 -12.97190 -12.87446 -12.83573 -12.67047 -12.21616 -12.10635 -11.89776 -11.67372 -11.28756 -11.07357 -10.45709 -9.92606 -9.75463 -9.36166 -9.27484 -6.83804 0.44116 0.71618 1.43315 1.47676 1.68103 1.74564 1.96369 2.36753 2.59231 3.36111 3.37677 3.53391 3.84039 3.96162 4.04856 4.35532 4.61181 4.65231 4.71204 4.75683 4.79032 4.85527 4.93249 5.19428 5.24676 5.31673 5.34504 5.39005 5.67516 5.71809 5.86504 5.92357 6.24027 6.29289 6.37590 6.61245 6.93954 7.47510 7.89757 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026251 B = 0.007784 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.353369 B = 3596.358892 C = 4406.013367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.117 3.883 3 C -0.140 4.140 4 N -0.820 5.820 5 C 0.482 3.518 6 O -0.540 6.540 7 N -0.652 5.652 8 C 0.371 3.629 9 C -0.311 4.311 10 C -0.030 4.030 11 C -0.294 4.294 12 C 0.257 3.743 13 C -0.511 4.511 14 H 0.069 0.931 15 C 0.021 3.979 16 N -0.822 5.822 17 Si 1.175 2.825 18 H -0.270 1.270 19 H -0.294 1.294 20 H -0.319 1.319 21 N -0.606 5.606 22 H 0.065 0.935 23 H 0.095 0.905 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.349 0.651 29 H 0.353 0.647 30 H 0.413 0.587 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.623 6.341 -8.189 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.020 3.980 3 C -0.198 4.198 4 N -0.353 5.353 5 C 0.268 3.732 6 O -0.414 6.414 7 N -0.299 5.299 8 C 0.139 3.861 9 C -0.335 4.335 10 C -0.055 4.055 11 C -0.316 4.316 12 C 0.132 3.868 13 C -0.544 4.544 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.445 5.445 17 Si 1.005 2.995 18 H -0.196 1.196 19 H -0.223 1.223 20 H -0.251 1.251 21 N -0.331 5.331 22 H 0.084 0.916 23 H 0.113 0.887 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.084 0.916 28 H 0.164 0.836 29 H 0.167 0.833 30 H 0.251 0.749 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.133 0.867 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.388 8.153 -9.545 17.636 hybrid contribution 0.356 -2.724 2.692 3.847 sum -12.032 5.429 -6.853 14.873 Atomic orbital electron populations 1.21656 0.89765 1.02919 1.03651 1.21217 0.98325 0.95515 0.82957 1.21884 1.01592 0.91843 1.04432 1.58986 1.17088 1.22201 1.37005 1.23103 0.79729 0.78079 0.92251 1.90580 1.56829 1.58007 1.36010 1.43480 1.17945 1.49747 1.18725 1.18502 0.89208 0.90078 0.88302 1.21836 1.00516 1.10565 1.00627 1.21323 0.95017 0.93366 0.95756 1.21789 0.94128 1.12049 1.03645 1.18391 0.94120 0.87441 0.86846 1.20670 0.91035 1.23683 1.18998 0.91270 1.28448 0.92394 1.03071 0.95730 1.70634 1.18806 1.23708 1.31338 0.81730 0.71253 0.70571 0.75978 1.19590 1.22275 1.25120 1.66199 1.14382 1.26052 1.26500 0.91639 0.88650 0.92727 0.92082 0.87943 0.91611 0.83596 0.83309 0.74906 0.83696 0.83999 0.86731 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 8.30 71.98 0.60 -1.68 16 2 C 0.12 2.43 1.16 2.78 0.00 2.43 16 3 C -0.14 -2.52 8.72 71.98 0.63 -1.89 16 4 N -0.82 -14.00 8.71 -154.53 -1.35 -15.35 16 5 C 0.48 14.81 6.51 87.66 0.57 15.38 16 6 O -0.54 -20.17 12.89 -3.00 -0.04 -20.21 16 7 N -0.65 -22.44 5.27 -308.37 -1.62 -24.06 16 8 C 0.37 16.47 7.51 133.25 1.00 17.47 16 9 C -0.31 -13.57 8.83 22.72 0.20 -13.37 16 10 C -0.03 -1.29 10.15 22.40 0.23 -1.07 16 11 C -0.29 -13.97 9.83 22.87 0.22 -13.75 16 12 C 0.26 13.58 6.27 40.19 0.25 13.83 16 13 C -0.51 -28.43 9.51 23.47 0.22 -28.21 16 14 H 0.07 3.91 8.06 -2.91 -0.02 3.88 16 15 C 0.02 1.17 5.51 85.29 0.47 1.64 16 16 N -0.82 -44.97 13.65 21.84 0.30 -44.68 16 17 Si 1.17 55.01 25.93 68.60 1.78 56.79 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.29 -14.31 6.55 99.48 0.65 -13.66 16 20 H -0.32 -14.47 7.11 99.48 0.71 -13.76 16 21 N -0.61 -30.17 5.07 -186.35 -0.95 -31.12 16 22 H 0.06 1.34 7.87 -2.39 -0.02 1.32 16 23 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.35 5.59 7.62 -89.69 -0.68 4.91 16 29 H 0.35 5.84 8.99 -89.69 -0.81 5.03 16 30 H 0.41 12.20 7.40 -92.71 -0.69 11.51 16 31 H 0.15 6.13 5.33 -3.17 -0.02 6.12 16 32 H 0.14 4.91 8.06 -2.91 -0.02 4.89 16 33 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 34 H 0.28 15.00 8.72 -92.71 -0.81 14.19 16 Total: -1.00 -64.55 285.41 1.40 -63.15 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -1.12 Total: 24.69 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 4.40 Total: -9.21 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -3.62 Total: -115.21 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.04 Total: -20.21 kcal Atomic # 14 Polarization: 55.01 SS G_CDS: 1.78 Total: 56.79 kcal Total: -64.55 1.40 -63.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349892691.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.602 kcal (2) G-P(sol) polarization free energy of solvation -64.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds