Wall clock time and date at job start Thu Apr 9 2020 12:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31987 * 120.04896 * 2 1 4 4 C 1.32222 * 120.07406 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.16395 * 359.97438 * 4 3 2 6 6 N 1.32184 * 120.09744 * 0.02562 * 5 4 3 7 7 C 1.32630 * 119.92268 * 359.97438 * 6 5 4 8 8 N 1.39401 * 120.08408 * 180.02562 * 7 6 5 9 9 C 1.34777 * 119.99811 * 0.02562 * 8 7 6 10 10 O 1.21277 * 119.99973 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99994 * 179.97438 * 9 8 7 12 12 C 1.53000 * 109.47329 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47603 * 179.97438 * 12 11 9 14 14 C 1.50693 * 109.47380 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00301 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00092 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99788 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00050 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47128 * 90.00372 * 18 16 14 20 20 H 1.48502 * 109.47251 * 209.99979 * 18 16 14 21 21 H 1.48496 * 109.47432 * 330.00174 * 18 16 14 22 22 H 1.08999 * 109.47232 * 270.02575 * 1 2 3 23 23 H 1.09002 * 109.46973 * 30.02344 * 1 2 3 24 24 H 1.09003 * 109.47139 * 150.02214 * 1 2 3 25 25 H 1.07996 * 119.91221 * 180.02562 * 4 3 2 26 26 H 1.08005 * 119.94915 * 180.28326 * 5 4 3 27 27 H 0.97001 * 120.00377 * 179.97438 * 8 7 6 28 28 H 1.09005 * 109.47009 * 299.99656 * 11 9 8 29 29 H 1.08996 * 109.47069 * 59.99973 * 11 9 8 30 30 H 1.08997 * 109.46904 * 300.00038 * 12 11 9 31 31 H 1.09004 * 109.47283 * 59.99331 * 12 11 9 32 32 H 1.08997 * 109.47238 * 300.00099 * 13 12 11 33 33 H 1.09012 * 109.46976 * 59.99786 * 13 12 11 34 34 H 0.97008 * 119.99668 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1679 1.1425 0.0000 4 6 3.4901 1.1431 0.0005 5 6 4.1854 -0.0520 0.0016 6 7 3.5302 -1.2000 0.0016 7 6 2.2039 -1.2049 0.0011 8 7 1.5095 -2.4136 0.0016 9 6 2.1860 -3.5793 0.0032 10 8 3.3988 -3.5767 0.0037 11 6 1.4354 -4.8861 0.0044 12 6 2.4322 -6.0469 0.0067 13 6 1.6702 -7.3736 0.0085 14 6 2.6520 -8.5168 0.0102 15 1 3.7133 -8.3171 0.0095 16 6 2.1953 -9.8177 0.0115 17 7 0.9028 -10.0609 0.0107 18 14 3.4123 -11.2349 0.0128 19 1 3.7348 -11.6091 1.4132 20 1 2.8150 -12.4011 -0.6861 21 1 4.6547 -10.8212 -0.6876 22 1 -0.3633 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 4.0283 2.0794 0.0009 26 1 5.2654 -0.0475 0.0066 27 1 0.5395 -2.4158 0.0016 28 1 0.8085 -4.9443 0.8942 29 1 0.8092 -4.9462 -0.8858 30 1 3.0593 -5.9889 -0.8829 31 1 3.0581 -5.9865 0.8970 32 1 1.0433 -7.4313 0.8983 33 1 1.0440 -7.4341 -0.8817 34 1 0.5815 -10.9762 0.0112 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350217802.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:39 Heat of formation + Delta-G solvation = 5.676882 kcal Electronic energy + Delta-G solvation = -17136.415242 eV Core-core repulsion = 14262.411058 eV Total energy + Delta-G solvation = -2874.004184 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.53033 -39.42456 -35.48927 -34.66126 -34.19022 -32.18690 -31.47106 -28.47661 -27.80165 -25.02626 -23.49084 -22.98835 -20.87310 -19.98120 -18.47065 -17.54901 -16.39802 -16.17210 -15.96382 -15.91027 -15.01128 -14.63418 -14.43875 -13.81274 -13.52213 -13.11467 -13.07562 -12.57034 -12.30362 -11.88201 -11.70896 -11.57743 -11.31055 -10.82432 -10.67171 -10.56237 -10.54654 -10.01353 -9.71434 -9.40258 -9.12444 -8.86831 -8.49722 -8.33630 -5.99429 -4.00837 0.60463 1.03545 2.69194 2.77691 3.34193 3.40069 3.44982 3.62984 3.90468 4.09880 4.17737 4.48304 4.76499 4.89074 5.00119 5.12599 5.20580 5.28704 5.36877 5.59331 5.60708 5.63765 5.89846 6.14235 6.35155 6.66298 6.85869 6.93116 7.11311 7.29765 7.67913 7.74394 7.79973 8.00821 8.25913 8.44631 9.06132 9.63317 11.12057 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.052077 B = 0.003619 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.540530 B = 7734.882363 C = 8241.372327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.041 3.959 3 N -0.416 5.416 4 C 0.005 3.995 5 C 0.081 3.919 6 N -0.432 5.432 7 C 0.323 3.677 8 N -0.661 5.661 9 C 0.499 3.501 10 O -0.466 6.466 11 C -0.136 4.136 12 C -0.096 4.096 13 C 0.021 3.979 14 C -0.519 4.519 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.168 0.832 26 H 0.171 0.829 27 H 0.418 0.582 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.792 21.844 -0.004 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.105 4.105 3 N -0.131 5.131 4 C -0.155 4.155 5 C -0.080 4.080 6 N -0.152 5.152 7 C 0.088 3.912 8 N -0.310 5.310 9 C 0.287 3.713 10 O -0.333 6.333 11 C -0.176 4.176 12 C -0.134 4.134 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 H 0.101 0.899 23 H 0.103 0.897 24 H 0.092 0.908 25 H 0.186 0.814 26 H 0.188 0.812 27 H 0.257 0.743 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.024 21.538 -0.010 21.562 hybrid contribution 0.194 -0.762 0.012 0.787 sum -0.830 20.776 0.002 20.792 Atomic orbital electron populations 1.20649 0.87757 1.03848 1.03543 1.21727 0.98083 0.87775 1.02960 1.68158 1.09208 1.27787 1.07945 1.23541 0.90535 0.99874 1.01524 1.23758 1.01940 0.87736 0.94570 1.68567 1.05988 1.29162 1.11529 1.19417 0.89960 0.86971 0.94852 1.44110 1.10754 1.03474 1.72676 1.21730 0.89063 0.85063 0.75490 1.90792 1.13610 1.86480 1.42443 1.21909 1.00543 0.90932 1.04176 1.21483 0.96703 0.93331 1.01910 1.19127 0.95460 0.89842 0.97201 1.21262 0.93258 0.90933 1.50246 0.92547 1.25018 0.95147 0.98990 0.95340 1.69961 1.12598 1.20019 1.51150 0.86585 0.81403 0.81870 0.78122 1.20662 1.21255 1.19817 0.89865 0.89651 0.90772 0.81439 0.81193 0.74307 0.88887 0.88891 0.92523 0.92527 0.96528 0.96523 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 9.76 36.01 0.35 -0.35 16 2 C 0.04 0.45 6.81 -82.17 -0.56 -0.11 16 3 N -0.42 -4.71 10.42 -9.13 -0.10 -4.81 16 4 C 0.01 0.05 11.21 -17.38 -0.19 -0.14 16 5 C 0.08 0.91 11.22 -17.39 -0.20 0.71 16 6 N -0.43 -6.58 8.05 -12.17 -0.10 -6.68 16 7 C 0.32 4.32 7.41 -154.41 -1.14 3.17 16 8 N -0.66 -8.08 5.30 -11.33 -0.06 -8.14 16 9 C 0.50 7.99 7.79 -10.98 -0.09 7.90 16 10 O -0.47 -9.43 14.25 5.56 0.08 -9.35 16 11 C -0.14 -2.12 5.70 -27.88 -0.16 -2.28 16 12 C -0.10 -2.03 4.44 -26.73 -0.12 -2.15 16 13 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 14 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 18 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.39 6.56 -51.93 -0.34 0.05 16 25 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 26 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 27 H 0.42 3.38 6.70 -40.82 -0.27 3.11 16 28 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -35.93 296.52 -7.02 -42.96 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -4.38 Total: -2.66 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -2.66 Total: -6.55 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.48 Total: -45.78 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -35.93 -7.02 -42.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350217802.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.634 kcal (2) G-P(sol) polarization free energy of solvation -35.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds