Wall clock time and date at job start Thu Apr 9 2020 12:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31987 * 120.04896 * 2 1 4 4 C 1.32222 * 120.07406 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.16395 * 359.97438 * 4 3 2 6 6 N 1.32184 * 120.09744 * 0.02562 * 5 4 3 7 7 C 1.32630 * 119.92268 * 359.97438 * 6 5 4 8 8 N 1.39401 * 120.08408 * 180.02562 * 7 6 5 9 9 C 1.34777 * 119.99811 * 0.02562 * 8 7 6 10 10 O 1.21277 * 119.99973 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99994 * 179.97438 * 9 8 7 12 12 C 1.53000 * 109.47329 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47603 * 179.97438 * 12 11 9 14 14 C 1.50693 * 109.47380 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00301 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00092 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99788 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00050 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47128 * 90.00372 * 18 16 14 20 20 H 1.48502 * 109.47251 * 209.99979 * 18 16 14 21 21 H 1.48496 * 109.47432 * 330.00174 * 18 16 14 22 22 H 1.08999 * 109.47232 * 270.02575 * 1 2 3 23 23 H 1.09002 * 109.46973 * 30.02344 * 1 2 3 24 24 H 1.09003 * 109.47139 * 150.02214 * 1 2 3 25 25 H 1.07996 * 119.91221 * 180.02562 * 4 3 2 26 26 H 1.08005 * 119.94915 * 180.28326 * 5 4 3 27 27 H 0.97001 * 120.00377 * 179.97438 * 8 7 6 28 28 H 1.09005 * 109.47009 * 299.99656 * 11 9 8 29 29 H 1.08996 * 109.47069 * 59.99973 * 11 9 8 30 30 H 1.08997 * 109.46904 * 300.00038 * 12 11 9 31 31 H 1.09004 * 109.47283 * 59.99331 * 12 11 9 32 32 H 1.08997 * 109.47238 * 300.00099 * 13 12 11 33 33 H 1.09012 * 109.46976 * 59.99786 * 13 12 11 34 34 H 0.97008 * 119.99668 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1679 1.1425 0.0000 4 6 3.4901 1.1431 0.0005 5 6 4.1854 -0.0520 0.0016 6 7 3.5302 -1.2000 0.0016 7 6 2.2039 -1.2049 0.0011 8 7 1.5095 -2.4136 0.0016 9 6 2.1860 -3.5793 0.0032 10 8 3.3988 -3.5767 0.0037 11 6 1.4354 -4.8861 0.0044 12 6 2.4322 -6.0469 0.0067 13 6 1.6702 -7.3736 0.0085 14 6 2.6520 -8.5168 0.0102 15 1 3.7133 -8.3171 0.0095 16 6 2.1953 -9.8177 0.0115 17 7 0.9028 -10.0609 0.0107 18 14 3.4123 -11.2349 0.0128 19 1 3.7348 -11.6091 1.4132 20 1 2.8150 -12.4011 -0.6861 21 1 4.6547 -10.8212 -0.6876 22 1 -0.3633 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 4.0283 2.0794 0.0009 26 1 5.2654 -0.0475 0.0066 27 1 0.5395 -2.4158 0.0016 28 1 0.8085 -4.9443 0.8942 29 1 0.8092 -4.9462 -0.8858 30 1 3.0593 -5.9889 -0.8829 31 1 3.0581 -5.9865 0.8970 32 1 1.0433 -7.4313 0.8983 33 1 1.0440 -7.4341 -0.8817 34 1 0.5815 -10.9762 0.0112 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350217802.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:38 Heat of formation + Delta-G solvation = -19.206506 kcal Electronic energy + Delta-G solvation = -17137.494267 eV Core-core repulsion = 14262.411058 eV Total energy + Delta-G solvation = -2875.083209 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.43903 -40.59214 -36.62217 -36.05071 -35.47251 -34.05215 -32.48072 -29.86753 -28.87840 -26.46337 -24.95787 -23.82174 -22.38624 -21.40776 -19.51727 -18.60811 -18.36681 -17.19696 -17.08154 -16.91806 -16.45606 -16.13701 -15.52493 -15.07508 -14.95648 -14.29093 -13.80036 -13.77713 -13.75194 -13.18373 -13.14138 -12.69509 -12.56011 -12.46897 -12.46082 -12.41439 -11.58077 -11.48680 -11.46834 -11.29061 -11.06347 -10.53750 -9.87828 -9.38617 -8.20296 -6.29728 -0.24598 0.15066 1.39882 1.40551 1.52105 1.60676 1.71602 2.41707 2.76742 3.12957 3.19604 3.21177 3.35949 3.83078 4.08519 4.16690 4.23147 4.25291 4.42320 4.67049 4.74121 4.77066 4.95633 5.02297 5.08607 5.16086 5.21030 5.49449 5.54694 5.76031 5.86969 6.00694 6.28351 6.43328 6.83274 6.85865 7.17445 7.38826 8.91084 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.052077 B = 0.003619 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.540530 B = 7734.882363 C = 8241.372327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.050 3.950 3 N -0.434 5.434 4 C 0.021 3.979 5 C 0.065 3.935 6 N -0.480 5.480 7 C 0.292 3.708 8 N -0.643 5.643 9 C 0.505 3.495 10 O -0.518 6.518 11 C -0.125 4.125 12 C -0.084 4.084 13 C 0.026 3.974 14 C -0.548 4.548 15 H 0.050 0.950 16 C 0.004 3.996 17 N -0.928 5.928 18 Si 0.960 3.040 19 H -0.272 1.272 20 H -0.278 1.278 21 H -0.269 1.269 22 H 0.098 0.902 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.206 0.794 26 H 0.192 0.808 27 H 0.437 0.563 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.004 0.996 33 H 0.004 0.996 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 23.084 0.020 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.096 4.096 3 N -0.149 5.149 4 C -0.138 4.138 5 C -0.095 4.095 6 N -0.200 5.200 7 C 0.058 3.942 8 N -0.294 5.294 9 C 0.293 3.707 10 O -0.390 6.390 11 C -0.165 4.165 12 C -0.122 4.122 13 C -0.011 4.011 14 C -0.586 4.586 15 H 0.068 0.932 16 C -0.194 4.194 17 N -0.568 5.568 18 Si 0.785 3.215 19 H -0.198 1.198 20 H -0.203 1.203 21 H -0.194 1.194 22 H 0.117 0.883 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.223 0.777 26 H 0.209 0.791 27 H 0.280 0.720 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.627 22.823 0.014 22.881 hybrid contribution 0.371 -1.026 0.006 1.091 sum -1.256 21.797 0.021 21.833 Atomic orbital electron populations 1.20822 0.84972 1.05194 1.04895 1.22241 0.99789 0.86729 1.00815 1.68310 1.09949 1.27759 1.08863 1.24141 0.90278 1.00808 0.98619 1.24197 1.03110 0.87382 0.94840 1.68443 1.07515 1.31502 1.12580 1.19635 0.89907 0.87708 0.96947 1.43716 1.11540 1.02366 1.71808 1.21598 0.88333 0.86010 0.74734 1.90776 1.15642 1.87282 1.45267 1.21728 0.99288 0.88852 1.06604 1.21180 0.97080 0.93594 1.00344 1.19012 0.94882 0.91387 0.95794 1.21694 0.93637 0.92588 1.50717 0.93210 1.25874 0.97069 1.01710 0.94725 1.70058 1.14264 1.20911 1.51580 0.85527 0.79032 0.78464 0.78523 1.19753 1.20291 1.19393 0.88327 0.88862 0.88888 0.77703 0.79089 0.72032 0.86436 0.86436 0.94136 0.94114 0.97765 0.97770 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 9.76 71.24 0.69 -0.44 16 2 C 0.05 1.01 6.81 42.76 0.29 1.30 16 3 N -0.43 -8.92 10.42 -182.80 -1.90 -10.82 16 4 C 0.02 0.37 11.21 84.64 0.95 1.32 16 5 C 0.06 1.41 11.22 84.64 0.95 2.36 16 6 N -0.48 -14.61 8.05 -192.42 -1.55 -16.16 16 7 C 0.29 7.56 7.41 132.87 0.98 8.55 16 8 N -0.64 -14.95 5.30 -308.14 -1.63 -16.58 16 9 C 0.51 16.02 7.79 87.66 0.68 16.70 16 10 O -0.52 -21.52 14.25 -3.02 -0.04 -21.57 16 11 C -0.13 -3.80 5.70 29.85 0.17 -3.63 16 12 C -0.08 -3.61 4.44 30.59 0.14 -3.47 16 13 C 0.03 1.37 4.97 29.84 0.15 1.52 16 14 C -0.55 -32.08 9.11 25.60 0.23 -31.85 16 15 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 16 C 0.00 0.25 5.46 84.66 0.46 0.71 16 17 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 18 Si 0.96 45.10 29.54 68.60 2.03 47.12 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 22 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.09 0.67 6.56 -2.39 -0.02 0.66 16 25 H 0.21 1.82 8.06 -2.91 -0.02 1.79 16 26 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 27 H 0.44 6.06 6.70 -92.71 -0.62 5.44 16 28 H 0.12 3.02 8.14 -2.38 -0.02 3.00 16 29 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 30 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 31 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 32 H 0.00 0.21 8.14 -2.39 -0.02 0.20 16 33 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 34 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -79.42 296.52 3.37 -76.04 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 0.49 Total: 4.46 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 5.70 Total: -6.95 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -4.80 Total: -99.11 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.04 Total: -21.57 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -79.42 3.37 -76.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350217802.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.838 kcal (2) G-P(sol) polarization free energy of solvation -79.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds