Wall clock time and date at job start Thu Apr 9 2020 12:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47722 * 2 1 4 4 H 1.09005 * 109.46912 * 54.99517 * 3 2 1 5 5 N 1.46907 * 109.46750 * 294.99964 * 3 2 1 6 6 C 1.50693 * 109.47478 * 174.99774 * 3 2 1 7 7 O 1.21279 * 119.99487 * 99.99896 * 6 3 2 8 8 N 1.34772 * 120.00278 * 279.99922 * 6 3 2 9 9 C 1.39264 * 120.00091 * 183.71172 * 8 6 3 10 10 C 1.39673 * 119.57701 * 339.10503 * 9 8 6 11 11 C 1.38658 * 119.49531 * 180.02562 * 10 9 8 12 12 C 1.38345 * 118.67220 * 359.97438 * 11 10 9 13 13 C 1.40587 * 119.12842 * 0.02562 * 12 11 10 14 14 C 1.41334 * 119.78623 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99970 * 5.12403 * 14 13 12 16 16 C 1.40027 * 120.00070 * 185.13247 * 14 13 12 17 17 N 1.30733 * 120.00033 * 184.82312 * 16 14 13 18 18 Si 1.86801 * 119.99810 * 4.81782 * 16 14 13 19 19 H 1.48501 * 109.47349 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.47422 * 300.00443 * 18 16 14 21 21 H 1.48503 * 109.47126 * 60.00450 * 18 16 14 22 22 N 1.31906 * 119.57595 * 159.39992 * 9 8 6 23 23 H 1.09008 * 109.46913 * 59.99871 * 1 2 3 24 24 H 1.09002 * 109.47901 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47424 * 300.00452 * 1 2 3 26 26 H 1.09000 * 109.47024 * 239.99446 * 2 1 3 27 27 H 1.09008 * 109.46913 * 120.00128 * 2 1 3 28 28 H 1.00890 * 111.00012 * 299.99734 * 5 3 2 29 29 H 1.00900 * 110.99791 * 63.95587 * 5 3 2 30 30 H 0.97004 * 119.99758 * 3.71667 * 8 6 3 31 31 H 1.07999 * 120.25148 * 0.03648 * 10 9 8 32 32 H 1.08004 * 120.66079 * 179.97438 * 11 10 9 33 33 H 1.07996 * 120.43675 * 180.02562 * 12 11 10 34 34 H 0.97003 * 120.00381 * 354.98328 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6515 2.0992 -1.2553 6 6 3.5419 1.4442 0.1239 7 8 4.2314 1.5971 -0.8620 8 7 4.1188 1.2758 1.3302 9 6 5.5034 1.3545 1.4570 10 6 6.3104 1.1684 0.3322 11 6 7.6888 1.2466 0.4605 12 6 8.2255 1.5090 1.7083 13 6 7.3601 1.6867 2.8019 14 6 7.8934 1.9560 4.0827 15 1 8.9560 2.1067 4.2045 16 6 7.0443 2.0272 5.1939 17 7 7.5229 2.3687 6.3615 18 14 5.2276 1.6342 5.0077 19 1 4.5518 1.7828 6.3216 20 1 4.6166 2.5689 4.0288 21 1 5.0700 0.2388 4.5246 22 7 6.0362 1.5979 2.6388 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8932 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.0422 1.6179 -2.0512 29 1 0.6477 2.1684 -1.3315 30 1 3.5695 1.0997 2.1101 31 1 5.8641 0.9654 -0.6301 32 1 8.3306 1.1055 -0.3967 33 1 9.2952 1.5764 1.8405 34 1 8.4771 2.5020 6.4745 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353147859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:40 Heat of formation + Delta-G solvation = -14.197461 kcal Electronic energy + Delta-G solvation = -18010.599661 eV Core-core repulsion = 15135.733660 eV Total energy + Delta-G solvation = -2874.866001 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29914 -38.34285 -36.08340 -34.58583 -33.49243 -31.14382 -30.96921 -29.71097 -26.73593 -25.26453 -22.85739 -21.80406 -21.27884 -19.77811 -18.41684 -17.60667 -16.91868 -15.46109 -15.15592 -15.10129 -15.00087 -14.50717 -14.08526 -13.96048 -13.54609 -12.97632 -12.84622 -12.46959 -12.25785 -12.19718 -11.87560 -11.72701 -11.25789 -11.08579 -10.83362 -10.33912 -9.99197 -9.67187 -9.27605 -9.16014 -8.78686 -8.54601 -7.75365 -7.48221 -7.22438 -4.78366 2.21632 2.64178 2.98949 3.23019 3.51395 3.63174 3.95737 4.38459 4.42549 4.60391 4.61845 4.67121 4.77039 5.11669 5.18605 5.37313 5.51677 5.65736 5.71930 5.85901 5.88684 6.08317 6.45203 6.51939 6.57288 6.84780 7.13351 7.19764 7.27550 7.43111 7.56500 7.63258 7.76557 8.11255 8.29004 8.45939 8.64780 9.39925 9.99265 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.007030 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.693544 B = 3982.220416 C = 4841.981015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.158 4.158 3 C 0.078 3.922 4 H 0.106 0.894 5 N -0.826 5.826 6 C 0.522 3.478 7 O -0.504 6.504 8 N -0.653 5.653 9 C 0.386 3.614 10 C -0.314 4.314 11 C -0.036 4.036 12 C -0.277 4.277 13 C 0.273 3.727 14 C -0.477 4.477 15 H 0.083 0.917 16 C 0.043 3.957 17 N -0.806 5.806 18 Si 1.154 2.846 19 H -0.332 1.332 20 H -0.279 1.279 21 H -0.295 1.295 22 N -0.599 5.599 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.351 0.649 29 H 0.346 0.654 30 H 0.406 0.594 31 H 0.145 0.855 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.672 -4.399 -9.099 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.198 4.198 3 C -0.038 4.038 4 H 0.124 0.876 5 N -0.359 5.359 6 C 0.307 3.693 7 O -0.378 6.378 8 N -0.298 5.298 9 C 0.155 3.845 10 C -0.339 4.339 11 C -0.060 4.060 12 C -0.299 4.299 13 C 0.149 3.851 14 C -0.509 4.509 15 H 0.101 0.899 16 C -0.178 4.178 17 N -0.428 5.428 18 Si 0.989 3.011 19 H -0.266 1.266 20 H -0.207 1.207 21 H -0.223 1.223 22 N -0.324 5.324 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.166 0.834 29 H 0.161 0.839 30 H 0.241 0.759 31 H 0.162 0.838 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.606 -3.515 -7.988 16.164 hybrid contribution 1.638 -0.963 -1.206 2.250 sum -11.967 -4.477 -9.194 15.742 Atomic orbital electron populations 1.21787 0.94703 1.02357 1.02079 1.22306 0.97045 0.96573 1.03826 1.21383 0.91861 0.94583 0.95940 0.87627 1.58498 1.15925 1.58227 1.03212 1.20438 0.90078 0.76039 0.82714 1.90569 1.63472 1.46623 1.37131 1.43258 1.06282 1.69424 1.10867 1.18128 0.82185 0.93220 0.90958 1.21740 0.93311 1.19183 0.99622 1.20960 0.94415 0.94533 0.96100 1.21613 0.99108 1.15501 0.93691 1.18272 0.85372 0.87709 0.93757 1.20728 0.96843 1.41760 0.91546 0.89863 1.27772 1.10005 0.89063 0.90948 1.70640 1.17565 1.29121 1.25467 0.81866 0.70766 0.77837 0.70619 1.26608 1.20707 1.22309 1.65979 1.14289 1.29343 1.22834 0.92682 0.92056 0.92039 0.91055 0.90574 0.83394 0.83912 0.75929 0.83808 0.87602 0.87689 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.68 37.15 0.36 -0.67 16 2 C -0.16 -1.44 5.56 -26.74 -0.15 -1.59 16 3 C 0.08 0.90 3.21 -68.87 -0.22 0.67 16 4 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 5 N -0.83 -8.92 8.94 -5.65 -0.05 -8.97 16 6 C 0.52 8.73 6.97 -10.99 -0.08 8.65 16 7 O -0.50 -9.96 12.91 5.56 0.07 -9.89 16 8 N -0.65 -12.18 5.41 -11.40 -0.06 -12.24 16 9 C 0.39 8.97 7.51 -154.98 -1.16 7.81 16 10 C -0.31 -7.20 8.90 -38.89 -0.35 -7.54 16 11 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 12 C -0.28 -6.71 9.83 -38.66 -0.38 -7.09 16 13 C 0.27 7.27 6.40 -85.00 -0.54 6.73 16 14 C -0.48 -13.12 9.57 -37.73 -0.36 -13.49 16 15 H 0.08 2.28 8.05 -52.48 -0.42 1.86 16 16 C 0.04 1.18 5.52 -17.35 -0.10 1.08 16 17 N -0.81 -22.04 13.65 55.55 0.76 -21.29 16 18 Si 1.15 27.82 25.61 -169.99 -4.35 23.46 16 19 H -0.33 -7.91 7.11 56.52 0.40 -7.51 16 20 H -0.28 -6.65 6.61 56.52 0.37 -6.27 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 N -0.60 -15.34 4.54 -10.25 -0.05 -15.39 16 23 H 0.05 0.32 6.87 -51.92 -0.36 -0.04 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.35 3.83 8.58 -39.30 -0.34 3.49 16 29 H 0.35 2.71 7.55 -39.29 -0.30 2.41 16 30 H 0.41 6.58 8.82 -40.82 -0.36 6.22 16 31 H 0.14 3.22 5.17 -52.92 -0.27 2.94 16 32 H 0.11 2.01 8.06 -52.48 -0.42 1.59 16 33 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 34 H 0.28 7.41 8.72 -40.82 -0.36 7.05 16 LS Contribution 285.76 15.07 4.31 4.31 Total: -1.00 -31.43 285.76 -6.94 -38.37 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.19 Total: 8.26 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -3.38 Total: -6.63 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.60 Total: -57.88 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 27.82 SS G_CDS: -4.35 Total: 23.46 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.43 -6.94 -38.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353147859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.174 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds