Wall clock time and date at job start Thu Apr 9 2020 12:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47722 * 2 1 4 4 H 1.09005 * 109.46912 * 54.99517 * 3 2 1 5 5 N 1.46907 * 109.46750 * 294.99964 * 3 2 1 6 6 C 1.50693 * 109.47478 * 174.99774 * 3 2 1 7 7 O 1.21279 * 119.99487 * 99.99896 * 6 3 2 8 8 N 1.34772 * 120.00278 * 279.99922 * 6 3 2 9 9 C 1.39264 * 120.00091 * 183.71172 * 8 6 3 10 10 C 1.39673 * 119.57701 * 339.10503 * 9 8 6 11 11 C 1.38658 * 119.49531 * 180.02562 * 10 9 8 12 12 C 1.38345 * 118.67220 * 359.97438 * 11 10 9 13 13 C 1.40587 * 119.12842 * 0.02562 * 12 11 10 14 14 C 1.41334 * 119.78623 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99970 * 5.12403 * 14 13 12 16 16 C 1.40027 * 120.00070 * 185.13247 * 14 13 12 17 17 N 1.30733 * 120.00033 * 184.82312 * 16 14 13 18 18 Si 1.86801 * 119.99810 * 4.81782 * 16 14 13 19 19 H 1.48501 * 109.47349 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.47422 * 300.00443 * 18 16 14 21 21 H 1.48503 * 109.47126 * 60.00450 * 18 16 14 22 22 N 1.31906 * 119.57595 * 159.39992 * 9 8 6 23 23 H 1.09008 * 109.46913 * 59.99871 * 1 2 3 24 24 H 1.09002 * 109.47901 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47424 * 300.00452 * 1 2 3 26 26 H 1.09000 * 109.47024 * 239.99446 * 2 1 3 27 27 H 1.09008 * 109.46913 * 120.00128 * 2 1 3 28 28 H 1.00890 * 111.00012 * 299.99734 * 5 3 2 29 29 H 1.00900 * 110.99791 * 63.95587 * 5 3 2 30 30 H 0.97004 * 119.99758 * 3.71667 * 8 6 3 31 31 H 1.07999 * 120.25148 * 0.03648 * 10 9 8 32 32 H 1.08004 * 120.66079 * 179.97438 * 11 10 9 33 33 H 1.07996 * 120.43675 * 180.02562 * 12 11 10 34 34 H 0.97003 * 120.00381 * 354.98328 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6515 2.0992 -1.2553 6 6 3.5419 1.4442 0.1239 7 8 4.2314 1.5971 -0.8620 8 7 4.1188 1.2758 1.3302 9 6 5.5034 1.3545 1.4570 10 6 6.3104 1.1684 0.3322 11 6 7.6888 1.2466 0.4605 12 6 8.2255 1.5090 1.7083 13 6 7.3601 1.6867 2.8019 14 6 7.8934 1.9560 4.0827 15 1 8.9560 2.1067 4.2045 16 6 7.0443 2.0272 5.1939 17 7 7.5229 2.3687 6.3615 18 14 5.2276 1.6342 5.0077 19 1 4.5518 1.7828 6.3216 20 1 4.6166 2.5689 4.0288 21 1 5.0700 0.2388 4.5246 22 7 6.0362 1.5979 2.6388 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8932 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.0422 1.6179 -2.0512 29 1 0.6477 2.1684 -1.3315 30 1 3.5695 1.0997 2.1101 31 1 5.8641 0.9654 -0.6301 32 1 8.3306 1.1055 -0.3967 33 1 9.2952 1.5764 1.8405 34 1 8.4771 2.5020 6.4745 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353147859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:40 Heat of formation + Delta-G solvation = -36.710076 kcal Electronic energy + Delta-G solvation = -18011.575881 eV Core-core repulsion = 15135.733660 eV Total energy + Delta-G solvation = -2875.842221 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.78746 -40.04277 -37.08576 -36.25075 -35.36950 -33.00762 -31.71089 -31.49819 -27.94526 -27.03442 -24.14302 -23.59482 -22.54938 -21.23318 -20.29050 -19.01775 -18.42140 -17.04187 -16.81163 -16.33924 -16.09664 -15.90712 -15.51728 -15.09820 -15.01833 -14.64477 -14.53219 -14.21070 -13.74842 -13.36676 -13.14038 -12.74775 -12.72477 -12.34558 -12.22083 -11.88441 -11.72214 -11.65428 -11.13360 -10.66030 -10.41548 -9.72145 -9.69024 -9.37066 -9.18999 -6.83926 0.50051 0.71793 1.50825 1.55241 1.73576 1.81621 2.07601 2.46413 2.65717 3.45871 3.53016 3.63548 3.87123 4.02067 4.07486 4.38321 4.40946 4.49063 4.64389 4.67703 4.76462 4.80844 5.08256 5.11789 5.33492 5.34552 5.37388 5.41608 5.71583 5.78925 5.91701 6.04560 6.30908 6.39993 6.56500 6.63991 7.04881 7.47844 7.93637 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.007030 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.693544 B = 3982.220416 C = 4841.981015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.152 4.152 3 C 0.089 3.911 4 H 0.124 0.876 5 N -0.835 5.835 6 C 0.519 3.481 7 O -0.535 6.535 8 N -0.651 5.651 9 C 0.375 3.625 10 C -0.313 4.313 11 C -0.029 4.029 12 C -0.294 4.294 13 C 0.257 3.743 14 C -0.509 4.509 15 H 0.068 0.932 16 C 0.013 3.987 17 N -0.828 5.828 18 Si 1.186 2.814 19 H -0.328 1.328 20 H -0.276 1.276 21 H -0.290 1.290 22 N -0.611 5.611 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.351 0.649 29 H 0.365 0.635 30 H 0.417 0.583 31 H 0.155 0.845 32 H 0.143 0.857 33 H 0.114 0.886 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.996 -4.951 -10.773 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C -0.026 4.026 4 H 0.142 0.858 5 N -0.370 5.370 6 C 0.307 3.693 7 O -0.410 6.410 8 N -0.298 5.298 9 C 0.144 3.856 10 C -0.337 4.337 11 C -0.053 4.053 12 C -0.316 4.316 13 C 0.132 3.868 14 C -0.541 4.541 15 H 0.086 0.914 16 C -0.203 4.203 17 N -0.452 5.452 18 Si 1.018 2.982 19 H -0.262 1.262 20 H -0.203 1.203 21 H -0.218 1.218 22 N -0.337 5.337 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.165 0.835 29 H 0.182 0.818 30 H 0.255 0.745 31 H 0.172 0.828 32 H 0.161 0.839 33 H 0.132 0.868 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.970 -4.070 -9.672 19.109 hybrid contribution 2.341 -0.811 -0.922 2.643 sum -13.630 -4.880 -10.594 17.939 Atomic orbital electron populations 1.21774 0.92532 1.03173 1.03034 1.22270 0.98770 0.94544 1.03569 1.21374 0.87630 0.96600 0.96997 0.85840 1.58472 1.17483 1.58266 1.02799 1.21509 0.92213 0.74203 0.81374 1.90529 1.64764 1.47805 1.37924 1.43381 1.04564 1.69485 1.12333 1.18522 0.84403 0.92360 0.90362 1.22109 0.93774 1.17798 0.99981 1.21370 0.94799 0.92586 0.96526 1.21777 0.99554 1.16237 0.93994 1.18457 0.86432 0.87837 0.94072 1.20730 0.96362 1.44374 0.92682 0.91418 1.28625 1.12321 0.88636 0.90711 1.70666 1.17505 1.31162 1.25822 0.81472 0.68189 0.77895 0.70660 1.26154 1.20331 1.21758 1.65994 1.13964 1.29655 1.24088 0.91566 0.91361 0.91282 0.91551 0.90715 0.83484 0.81793 0.74550 0.82832 0.83885 0.86767 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.68 71.98 0.70 -0.76 16 2 C -0.15 -2.30 5.56 30.59 0.17 -2.13 16 3 C 0.09 1.78 3.21 44.16 0.14 1.92 16 4 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 5 N -0.84 -15.57 8.94 -171.79 -1.54 -17.11 16 6 C 0.52 16.16 6.97 87.66 0.61 16.77 16 7 O -0.53 -20.06 12.91 -3.03 -0.04 -20.10 16 8 N -0.65 -22.93 5.41 -308.38 -1.67 -24.60 16 9 C 0.37 16.85 7.51 133.25 1.00 17.85 16 10 C -0.31 -13.70 8.90 22.72 0.20 -13.50 16 11 C -0.03 -1.22 10.15 22.40 0.23 -0.99 16 12 C -0.29 -14.04 9.83 22.87 0.22 -13.82 16 13 C 0.26 13.74 6.40 40.20 0.26 13.99 16 14 C -0.51 -28.76 9.57 23.47 0.22 -28.53 16 15 H 0.07 3.89 8.05 -2.91 -0.02 3.86 16 16 C 0.01 0.75 5.52 85.29 0.47 1.22 16 17 N -0.83 -46.36 13.65 21.84 0.30 -46.06 16 18 Si 1.19 56.14 25.61 68.60 1.76 57.90 16 19 H -0.33 -15.13 7.11 99.48 0.71 -14.42 16 20 H -0.28 -12.74 6.61 99.48 0.66 -12.08 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 22 N -0.61 -30.82 4.54 -186.36 -0.85 -31.66 16 23 H 0.07 0.51 6.87 -2.38 -0.02 0.50 16 24 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.35 6.77 8.58 -89.70 -0.77 6.01 16 29 H 0.36 4.43 7.55 -89.69 -0.68 3.76 16 30 H 0.42 12.56 8.82 -92.71 -0.82 11.74 16 31 H 0.15 6.52 5.17 -9.79 -0.05 6.47 16 32 H 0.14 4.95 8.06 -2.91 -0.02 4.92 16 33 H 0.11 5.13 8.06 -2.91 -0.02 5.10 16 34 H 0.28 15.22 8.72 -92.71 -0.81 14.42 16 Total: -1.00 -67.39 285.76 0.96 -66.43 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -1.24 Total: 23.17 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 4.23 Total: -7.98 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -3.75 Total: -119.43 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.04 Total: -20.10 kcal Atomic # 14 Polarization: 56.14 SS G_CDS: 1.76 Total: 57.90 kcal Total: -67.39 0.96 -66.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353147859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.722 kcal (2) G-P(sol) polarization free energy of solvation -67.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds