Wall clock time and date at job start Thu Apr 9 2020 12:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34332 * 126.44280 * 2 1 4 4 N 1.34471 * 107.66856 * 180.02562 * 3 2 1 5 5 C 1.30253 * 108.70602 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.62276 * 180.26292 * 5 4 3 7 7 N 1.46908 * 109.47312 * 89.69230 * 6 5 4 8 8 C 1.46898 * 110.99933 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46772 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46873 * 55.00440 * 9 8 7 11 11 C 1.47200 * 109.47153 * 295.00179 * 9 8 7 12 12 N 7.24327 * 145.60032 * 99.90833 * 2 1 3 13 13 C 1.52999 * 109.47052 * 175.00051 * 9 8 7 14 14 C 1.50697 * 109.47276 * 185.00376 * 13 9 8 15 15 H 1.08007 * 119.99933 * 359.97438 * 14 13 9 16 16 C 1.37878 * 119.99990 * 180.02562 * 14 13 9 17 17 N 1.31509 * 120.00161 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99784 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47284 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46780 * 120.00219 * 18 16 14 21 21 H 1.48497 * 109.47158 * 239.99769 * 18 16 14 22 22 O 1.33974 * 108.75653 * 359.97438 * 5 4 3 23 23 H 1.09010 * 109.46876 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47152 * 299.99612 * 1 2 3 25 25 H 1.09002 * 109.47002 * 60.00351 * 1 2 3 26 26 H 1.08005 * 126.16232 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.46949 * 209.69285 * 6 5 4 28 28 H 1.09000 * 109.47067 * 329.69047 * 6 5 4 29 29 H 1.00898 * 110.99186 * 303.95881 * 7 6 5 30 30 H 1.09003 * 109.47128 * 299.99873 * 8 7 6 31 31 H 1.09000 * 109.46676 * 60.00170 * 8 7 6 32 32 H 1.09004 * 109.46976 * 305.00356 * 13 9 8 33 33 H 1.08999 * 109.47007 * 64.99884 * 13 9 8 34 34 H 0.96995 * 120.00117 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6479 -0.0006 5 6 3.5766 -0.6547 -0.0015 6 6 4.8005 -1.5339 0.0033 7 7 5.1965 -1.8145 1.3899 8 6 6.3887 -2.6716 1.4336 9 6 6.7701 -2.9406 2.8907 10 1 5.9137 -3.3600 3.4189 11 6 7.1734 -1.6792 3.5333 12 7 7.4835 -0.7042 4.0311 13 6 7.9342 -3.9323 2.9384 14 6 8.2295 -4.2918 4.3717 15 1 7.6455 -3.8562 5.1691 16 6 9.2458 -5.1761 4.6654 17 7 9.9572 -5.7061 3.6946 18 14 9.6123 -5.6211 6.4422 19 1 8.6759 -4.8954 7.3376 20 1 9.4430 -7.0843 6.6310 21 1 11.0089 -5.2381 6.7706 22 8 2.3075 -1.0840 -0.0009 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.9821 2.1113 0.0004 27 1 4.5769 -2.4706 -0.5074 28 1 5.6154 -1.0249 -0.5114 29 1 5.3467 -0.9589 1.9031 30 1 6.1758 -3.6161 0.9330 31 1 7.2148 -2.1708 0.9287 32 1 7.6671 -4.8330 2.3855 33 1 8.8170 -3.4782 2.4884 34 1 10.6720 -6.3285 3.9012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356597615.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:44 Heat of formation + Delta-G solvation = 35.327658 kcal Electronic energy + Delta-G solvation = -16889.390182 eV Core-core repulsion = 14016.671752 eV Total energy + Delta-G solvation = -2872.718430 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.42675 -37.59171 -35.47833 -34.76896 -33.71801 -32.72415 -31.55400 -28.61216 -26.37845 -24.74868 -22.75608 -22.27605 -21.83710 -21.05631 -17.39147 -16.92990 -16.75063 -16.46447 -15.52586 -14.86602 -14.71891 -14.53410 -14.22625 -13.50541 -13.37687 -13.29267 -12.85706 -12.65009 -12.60079 -12.19669 -12.09669 -11.72028 -11.43584 -11.26868 -11.06054 -10.76951 -10.64985 -10.54533 -10.29835 -9.60731 -9.24878 -8.87719 -8.52709 -8.46383 -6.10841 -4.13820 1.27131 2.46477 2.55816 3.28256 3.36565 3.41354 3.54025 3.60173 3.84059 4.31037 4.42458 4.56359 4.75993 4.81015 4.86276 5.08108 5.17305 5.24866 5.27532 5.35821 5.47641 5.64012 5.71341 5.89879 6.05921 6.14931 6.26570 6.49636 6.84204 7.20531 7.41319 7.50795 7.62003 7.84546 8.21601 8.38595 8.90927 9.51870 11.00098 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.042593 B = 0.003604 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.226427 B = 7767.664106 C = 7829.069493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.050 4.050 3 C -0.046 4.046 4 N -0.481 5.481 5 C 0.200 3.800 6 C 0.153 3.847 7 N -0.689 5.689 8 C 0.068 3.932 9 C 0.008 3.992 10 H 0.112 0.888 11 C 0.238 3.762 12 N -0.473 5.473 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.284 1.284 22 O -0.192 6.192 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.182 0.818 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.347 0.653 30 H 0.097 0.903 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.026 0.974 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.807 7.339 -10.750 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C -0.184 4.184 4 N -0.210 5.210 5 C -0.008 4.008 6 C 0.023 3.977 7 N -0.322 5.322 8 C -0.061 4.061 9 C -0.014 4.014 10 H 0.130 0.870 11 C -0.079 4.079 12 N -0.150 5.150 13 C -0.006 4.006 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.210 1.210 22 O -0.078 6.078 23 H 0.097 0.903 24 H 0.107 0.893 25 H 0.105 0.895 26 H 0.199 0.801 27 H 0.124 0.876 28 H 0.095 0.905 29 H 0.165 0.835 30 H 0.116 0.884 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.094 8.474 -9.968 20.741 hybrid contribution 0.262 -0.326 0.629 0.756 sum -15.832 8.148 -9.339 20.106 Atomic orbital electron populations 1.20265 0.84067 1.04386 1.03731 1.23491 0.95122 0.84722 1.07080 1.23037 0.87830 1.00354 1.07219 1.70447 1.23238 1.09357 1.17979 1.26146 0.84364 0.89937 1.00309 1.20254 0.87932 0.97066 0.92417 1.60580 1.38280 1.22313 1.11053 1.22142 0.89407 0.97884 0.96715 1.19328 1.02597 0.87333 0.92159 0.86988 1.29381 0.91875 0.93783 0.92869 1.81127 1.10567 1.13557 1.09723 1.19176 0.90523 0.92555 0.98375 1.21181 1.16969 1.26230 0.92050 0.92422 1.24950 0.95840 0.95887 0.97305 1.69939 1.21141 1.30451 1.31480 0.86533 0.78278 0.78223 0.85040 1.19670 1.20816 1.20999 1.84421 1.17790 1.36323 1.69243 0.90300 0.89341 0.89473 0.80135 0.87641 0.90532 0.83456 0.88427 0.93959 0.94067 0.95612 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.43 36.01 0.38 -0.03 16 2 C -0.05 -0.53 7.39 -35.69 -0.26 -0.80 16 3 C -0.05 -0.52 11.80 -17.77 -0.21 -0.73 16 4 N -0.48 -6.79 11.29 -11.10 -0.13 -6.91 16 5 C 0.20 2.64 7.86 -12.95 -0.10 2.54 16 6 C 0.15 1.75 6.31 -4.97 -0.03 1.72 16 7 N -0.69 -9.28 6.49 -115.05 -0.75 -10.03 16 8 C 0.07 0.95 5.12 -3.82 -0.02 0.93 16 9 C 0.01 0.14 2.42 -93.41 -0.23 -0.08 16 10 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 11 C 0.24 4.83 12.98 -20.70 -0.27 4.56 16 12 N -0.47 -10.47 18.55 42.23 0.78 -9.68 16 13 C 0.03 0.73 4.42 -27.89 -0.12 0.61 16 14 C -0.53 -13.92 8.60 -34.44 -0.30 -14.21 16 15 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 18 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 O -0.19 -2.47 10.78 5.35 0.06 -2.42 16 23 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.18 1.50 8.06 -52.48 -0.42 1.08 16 27 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.35 5.16 7.80 -39.29 -0.31 4.86 16 30 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 307.22 15.07 4.63 4.63 Total: -1.00 -31.98 307.22 -5.44 -37.42 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.49 Total: -0.78 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -1.26 Total: -3.89 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.65 Total: -51.22 kcal Atomic # 8 Polarization: -2.47 SS G_CDS: 0.06 Total: -2.42 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.98 -5.44 -37.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356597615.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.745 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds