Wall clock time and date at job start Thu Apr 9 2020 12:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34332 * 126.44280 * 2 1 4 4 N 1.34471 * 107.66856 * 180.02562 * 3 2 1 5 5 C 1.30253 * 108.70602 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.62276 * 180.26292 * 5 4 3 7 7 N 1.46908 * 109.47312 * 89.69230 * 6 5 4 8 8 C 1.46898 * 110.99933 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46772 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46873 * 55.00440 * 9 8 7 11 11 C 1.47200 * 109.47153 * 295.00179 * 9 8 7 12 12 N 7.24327 * 145.60032 * 99.90833 * 2 1 3 13 13 C 1.52999 * 109.47052 * 175.00051 * 9 8 7 14 14 C 1.50697 * 109.47276 * 185.00376 * 13 9 8 15 15 H 1.08007 * 119.99933 * 359.97438 * 14 13 9 16 16 C 1.37878 * 119.99990 * 180.02562 * 14 13 9 17 17 N 1.31509 * 120.00161 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99784 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47284 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46780 * 120.00219 * 18 16 14 21 21 H 1.48497 * 109.47158 * 239.99769 * 18 16 14 22 22 O 1.33974 * 108.75653 * 359.97438 * 5 4 3 23 23 H 1.09010 * 109.46876 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47152 * 299.99612 * 1 2 3 25 25 H 1.09002 * 109.47002 * 60.00351 * 1 2 3 26 26 H 1.08005 * 126.16232 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.46949 * 209.69285 * 6 5 4 28 28 H 1.09000 * 109.47067 * 329.69047 * 6 5 4 29 29 H 1.00898 * 110.99186 * 303.95881 * 7 6 5 30 30 H 1.09003 * 109.47128 * 299.99873 * 8 7 6 31 31 H 1.09000 * 109.46676 * 60.00170 * 8 7 6 32 32 H 1.09004 * 109.46976 * 305.00356 * 13 9 8 33 33 H 1.08999 * 109.47007 * 64.99884 * 13 9 8 34 34 H 0.96995 * 120.00117 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6479 -0.0006 5 6 3.5766 -0.6547 -0.0015 6 6 4.8005 -1.5339 0.0033 7 7 5.1965 -1.8145 1.3899 8 6 6.3887 -2.6716 1.4336 9 6 6.7701 -2.9406 2.8907 10 1 5.9137 -3.3600 3.4189 11 6 7.1734 -1.6792 3.5333 12 7 7.4835 -0.7042 4.0311 13 6 7.9342 -3.9323 2.9384 14 6 8.2295 -4.2918 4.3717 15 1 7.6455 -3.8562 5.1691 16 6 9.2458 -5.1761 4.6654 17 7 9.9572 -5.7061 3.6946 18 14 9.6123 -5.6211 6.4422 19 1 8.6759 -4.8954 7.3376 20 1 9.4430 -7.0843 6.6310 21 1 11.0089 -5.2381 6.7706 22 8 2.3075 -1.0840 -0.0009 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.9821 2.1113 0.0004 27 1 4.5769 -2.4706 -0.5074 28 1 5.6154 -1.0249 -0.5114 29 1 5.3467 -0.9589 1.9031 30 1 6.1758 -3.6161 0.9330 31 1 7.2148 -2.1708 0.9287 32 1 7.6671 -4.8330 2.3855 33 1 8.8170 -3.4782 2.4884 34 1 10.6720 -6.3285 3.9012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356597615.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:43 Heat of formation + Delta-G solvation = 11.650139 kcal Electronic energy + Delta-G solvation = -16890.416916 eV Core-core repulsion = 14016.671752 eV Total energy + Delta-G solvation = -2873.745165 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.30852 -38.96583 -36.81804 -35.75220 -35.45412 -33.89721 -32.88046 -29.77468 -27.77883 -25.84105 -24.05326 -23.58317 -23.11953 -21.97128 -18.66239 -18.28696 -18.10037 -17.78888 -16.69157 -16.53951 -15.68734 -15.57838 -15.33142 -14.78416 -14.56133 -14.27523 -14.12364 -13.86066 -13.77996 -13.38150 -13.30982 -13.10580 -13.04295 -12.67896 -12.49244 -12.40758 -12.31382 -11.98520 -11.56570 -11.42359 -11.16731 -10.54285 -9.74908 -9.51297 -8.18903 -6.26380 0.40885 1.39367 1.42709 1.52776 1.59841 1.72102 1.92087 1.94648 2.42167 2.96397 3.16313 3.23853 3.31550 3.84941 4.06065 4.08320 4.25610 4.36009 4.42206 4.57570 4.71112 4.71474 4.72417 4.94698 4.96573 5.06463 5.21057 5.32571 5.49401 5.63625 5.77818 5.82314 6.06693 6.21929 6.72775 6.74414 6.88434 7.42068 8.92083 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.042593 B = 0.003604 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.226427 B = 7767.664106 C = 7829.069493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.046 4.046 3 C -0.069 4.069 4 N -0.510 5.510 5 C 0.182 3.818 6 C 0.155 3.845 7 N -0.692 5.692 8 C 0.079 3.921 9 C 0.018 3.982 10 H 0.123 0.877 11 C 0.249 3.751 12 N -0.507 5.507 13 C 0.039 3.961 14 C -0.539 4.539 15 H 0.052 0.948 16 C 0.012 3.988 17 N -0.922 5.922 18 Si 0.947 3.053 19 H -0.271 1.271 20 H -0.272 1.272 21 H -0.286 1.286 22 O -0.205 6.205 23 H 0.083 0.917 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.205 0.795 27 H 0.128 0.872 28 H 0.085 0.915 29 H 0.337 0.663 30 H 0.121 0.879 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.004 0.996 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.428 7.219 -11.102 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.099 4.099 3 C -0.207 4.207 4 N -0.240 5.240 5 C -0.025 4.025 6 C 0.026 3.974 7 N -0.324 5.324 8 C -0.050 4.050 9 C -0.004 4.004 10 H 0.141 0.859 11 C -0.067 4.067 12 N -0.185 5.185 13 C 0.000 4.000 14 C -0.577 4.577 15 H 0.070 0.930 16 C -0.187 4.187 17 N -0.562 5.562 18 Si 0.773 3.227 19 H -0.196 1.196 20 H -0.198 1.198 21 H -0.212 1.212 22 O -0.092 6.092 23 H 0.102 0.898 24 H 0.123 0.877 25 H 0.129 0.871 26 H 0.222 0.778 27 H 0.146 0.854 28 H 0.103 0.897 29 H 0.154 0.846 30 H 0.139 0.861 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.022 0.978 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.733 8.351 -10.326 22.155 hybrid contribution 0.695 -0.242 0.719 1.029 sum -17.039 8.109 -9.607 21.175 Atomic orbital electron populations 1.20512 0.80825 1.05311 1.05622 1.24356 0.96802 0.83883 1.04886 1.23519 0.87216 1.01894 1.08060 1.70413 1.24907 1.10104 1.18618 1.26378 0.84931 0.89995 1.01173 1.20367 0.87678 0.98138 0.91226 1.60549 1.37603 1.21756 1.12455 1.22019 0.89959 0.99297 0.93762 1.19273 1.00977 0.85181 0.94919 0.85894 1.29838 0.90989 0.93861 0.92030 1.81124 1.11522 1.14815 1.11007 1.18998 0.91368 0.93493 0.96154 1.21591 1.16607 1.25705 0.93818 0.92981 1.25678 0.96048 0.96221 1.00734 1.70021 1.21797 1.31260 1.33107 0.85670 0.77737 0.78370 0.80943 1.19555 1.19763 1.21183 1.84422 1.18000 1.37337 1.69420 0.89840 0.87671 0.87145 0.77836 0.85357 0.89749 0.84621 0.86072 0.93634 0.93947 0.97797 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.43 71.24 0.74 0.13 16 2 C -0.05 -0.90 7.39 24.79 0.18 -0.71 16 3 C -0.07 -1.50 11.80 83.40 0.98 -0.52 16 4 N -0.51 -14.14 11.29 -303.82 -3.43 -17.57 16 5 C 0.18 4.65 7.86 88.34 0.69 5.35 16 6 C 0.16 3.31 6.31 85.55 0.54 3.85 16 7 N -0.69 -17.63 6.49 -517.91 -3.36 -20.99 16 8 C 0.08 2.08 5.12 86.30 0.44 2.52 16 9 C 0.02 0.64 2.42 -12.60 -0.03 0.61 16 10 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 11 C 0.25 10.02 12.98 89.42 1.16 11.18 16 12 N -0.51 -22.45 18.55 20.03 0.37 -22.08 16 13 C 0.04 1.74 4.42 29.85 0.13 1.87 16 14 C -0.54 -28.36 8.60 25.60 0.22 -28.14 16 15 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 16 C 0.01 0.66 5.46 84.66 0.46 1.13 16 17 N -0.92 -52.39 13.29 21.45 0.28 -52.10 16 18 Si 0.95 43.42 29.54 68.60 2.03 45.44 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 22 O -0.21 -5.06 10.78 -3.76 -0.04 -5.10 16 23 H 0.08 0.72 8.14 -2.38 -0.02 0.71 16 24 H 0.10 0.66 8.14 -2.39 -0.02 0.65 16 25 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.20 3.10 8.06 -2.91 -0.02 3.07 16 27 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.34 9.78 7.80 -89.70 -0.70 9.08 16 30 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.26 14.23 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -68.30 307.22 1.79 -66.51 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.41 Total: 8.64 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 5.53 Total: -2.74 kcal Atomic # 7 Polarization: -106.61 SS G_CDS: -6.13 Total: -112.74 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.04 Total: -5.10 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -68.30 1.79 -66.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356597615.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.158 kcal (2) G-P(sol) polarization free energy of solvation -68.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds