Wall clock time and date at job start Thu Apr 9 2020 12:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34327 * 126.44420 * 2 1 4 4 N 1.34476 * 107.66953 * 179.77009 * 3 2 1 5 5 C 1.30255 * 108.70238 * 0.42076 * 4 3 2 6 6 C 1.50699 * 125.62191 * 179.83989 * 5 4 3 7 7 N 1.46906 * 109.47140 * 89.69529 * 6 5 4 8 8 C 1.46898 * 110.99888 * 180.02562 * 7 6 5 9 9 C 1.53007 * 109.46764 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47126 * 304.99895 * 9 8 7 11 11 C 1.47195 * 109.46921 * 65.00197 * 9 8 7 12 12 N 6.81833 * 119.73852 * 137.16809 * 2 1 3 13 13 C 1.53002 * 109.46757 * 185.00049 * 9 8 7 14 14 C 1.50704 * 109.46906 * 174.99987 * 13 9 8 15 15 H 1.08004 * 119.99838 * 0.02562 * 14 13 9 16 16 C 1.37875 * 119.99820 * 180.02562 * 14 13 9 17 17 N 1.31508 * 120.00078 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99828 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47090 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47766 * 119.99679 * 18 16 14 21 21 H 1.48507 * 109.47118 * 239.99896 * 18 16 14 22 22 O 1.33969 * 108.75739 * 359.57720 * 5 4 3 23 23 H 1.08992 * 109.47073 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.46842 * 300.00008 * 1 2 3 25 25 H 1.08995 * 109.46626 * 59.99729 * 1 2 3 26 26 H 1.08007 * 126.16713 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47247 * 329.69551 * 6 5 4 28 28 H 1.09001 * 109.47358 * 209.68977 * 6 5 4 29 29 H 1.00902 * 110.99923 * 303.95945 * 7 6 5 30 30 H 1.08995 * 109.47296 * 299.99911 * 8 7 6 31 31 H 1.08997 * 109.47334 * 60.00212 * 8 7 6 32 32 H 1.09001 * 109.47153 * 294.99578 * 13 9 8 33 33 H 1.08992 * 109.47216 * 55.00087 * 13 9 8 34 34 H 0.97001 * 120.00023 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0051 5 6 3.5766 -0.6548 -0.0008 6 6 4.8005 -1.5340 -0.0014 7 7 5.1986 -1.8201 1.3834 8 6 6.3916 -2.6763 1.4220 9 6 6.7752 -2.9512 2.8775 10 1 6.9017 -2.0055 3.4047 11 6 5.7116 -3.7358 3.5254 12 7 4.8892 -4.3417 4.0249 13 6 8.0868 -3.7378 2.9193 14 6 8.5284 -3.9023 4.3508 15 1 7.9329 -3.4876 5.1507 16 6 9.6927 -4.5821 4.6392 17 7 10.4176 -5.0875 3.6652 18 14 10.2398 -4.7866 6.4135 19 1 9.2565 -4.1315 7.3133 20 1 10.3252 -6.2323 6.7419 21 1 11.5727 -4.1579 6.5962 22 8 2.3075 -1.0840 -0.0005 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8899 26 1 1.9822 2.1113 0.0004 27 1 5.6147 -1.0231 -0.5154 28 1 4.5762 -2.4687 -0.5153 29 1 5.3496 -0.9665 1.8999 30 1 6.1788 -3.6189 0.9178 31 1 7.2166 -2.1729 0.9181 32 1 7.9361 -4.7197 2.4705 33 1 8.8524 -3.1975 2.3627 34 1 11.2365 -5.5661 3.8682 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356597616.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:45 Heat of formation + Delta-G solvation = 35.582988 kcal Electronic energy + Delta-G solvation = -16889.901090 eV Core-core repulsion = 14017.193731 eV Total energy + Delta-G solvation = -2872.707358 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.42515 -37.49561 -35.46316 -34.76253 -33.65649 -32.72177 -31.53415 -28.60483 -26.38056 -24.75703 -22.73074 -22.26006 -21.79261 -21.07175 -17.62824 -16.92316 -16.66976 -16.40309 -15.14060 -14.90042 -14.83413 -14.42121 -14.28515 -13.73475 -13.37186 -13.24366 -12.76299 -12.68045 -12.43940 -12.16802 -11.99748 -11.69155 -11.42526 -11.24479 -11.07761 -10.72137 -10.66317 -10.53525 -10.26856 -9.60169 -9.24576 -8.86816 -8.51234 -8.45384 -6.10860 -4.13870 1.27634 2.46845 2.56149 3.28292 3.36636 3.41423 3.70832 3.81259 3.84531 4.31189 4.42779 4.56522 4.81044 4.86421 4.87796 5.08570 5.17387 5.25159 5.27625 5.35982 5.50962 5.66909 5.71462 5.90569 5.94634 6.15376 6.30290 6.44406 6.84587 7.26518 7.40626 7.50769 7.61592 7.84694 8.21596 8.56941 8.91075 9.51861 11.00080 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.045328 B = 0.003637 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.567445 B = 7696.008250 C = 7927.931814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.050 4.050 3 C -0.046 4.046 4 N -0.480 5.480 5 C 0.200 3.800 6 C 0.154 3.846 7 N -0.691 5.691 8 C 0.067 3.933 9 C 0.010 3.990 10 H 0.101 0.899 11 C 0.253 3.747 12 N -0.477 5.477 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.282 1.282 22 O -0.192 6.192 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.182 0.818 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.350 0.650 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.027 0.973 33 H 0.039 0.961 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.975 11.353 -10.698 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C -0.185 4.185 4 N -0.210 5.210 5 C -0.007 4.007 6 C 0.025 3.975 7 N -0.324 5.324 8 C -0.062 4.062 9 C -0.012 4.012 10 H 0.119 0.881 11 C -0.064 4.064 12 N -0.154 5.154 13 C -0.007 4.007 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 O -0.078 6.078 23 H 0.097 0.903 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.199 0.801 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.169 0.831 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.958 10.119 -9.909 20.599 hybrid contribution 0.749 0.389 0.590 1.030 sum -14.209 10.508 -9.319 19.979 Atomic orbital electron populations 1.20266 0.84135 1.04390 1.03724 1.23498 0.95139 0.84735 1.07036 1.23027 0.87856 1.00298 1.07277 1.70437 1.23169 1.09250 1.18117 1.26158 0.84367 0.89935 1.00243 1.20236 0.87951 0.96908 0.92442 1.60520 1.38395 1.22429 1.11077 1.22128 0.89759 0.97516 0.96821 1.19221 0.91813 0.98234 0.91943 0.88126 1.28893 0.92305 0.92790 0.92378 1.81032 1.13019 1.11004 1.10364 1.19180 0.87854 0.95305 0.98373 1.21180 1.07441 1.35731 0.92076 0.92415 1.24950 0.96498 0.95250 0.97289 1.69942 1.15115 1.36560 1.31399 0.86533 0.78562 0.77956 0.85020 1.19662 1.20966 1.20852 1.84433 1.17870 1.36374 1.69160 0.90348 0.89341 0.89441 0.80106 0.90310 0.88037 0.83130 0.89951 0.92472 0.95437 0.94292 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.43 36.01 0.38 -0.06 16 2 C -0.05 -0.54 7.39 -35.69 -0.26 -0.81 16 3 C -0.05 -0.51 11.80 -17.77 -0.21 -0.72 16 4 N -0.48 -6.47 11.29 -11.10 -0.13 -6.60 16 5 C 0.20 2.62 7.86 -12.95 -0.10 2.52 16 6 C 0.15 1.74 6.31 -4.97 -0.03 1.70 16 7 N -0.69 -9.08 6.19 -115.05 -0.71 -9.79 16 8 C 0.07 0.93 5.05 -3.82 -0.02 0.91 16 9 C 0.01 0.18 2.35 -93.40 -0.22 -0.04 16 10 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 11 C 0.25 5.29 13.67 -20.73 -0.28 5.01 16 12 N -0.48 -10.95 18.54 42.20 0.78 -10.17 16 13 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 14 C -0.53 -13.90 8.60 -34.44 -0.30 -14.20 16 15 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 18 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 O -0.19 -2.58 10.78 5.36 0.06 -2.52 16 23 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.18 1.44 8.06 -52.48 -0.42 1.01 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.35 4.45 8.72 -39.29 -0.34 4.11 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 308.39 15.07 4.65 4.65 Total: -1.00 -32.56 308.39 -5.43 -37.99 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.53 Total: -1.72 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -1.27 Total: -3.49 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.68 Total: -51.15 kcal Atomic # 8 Polarization: -2.58 SS G_CDS: 0.06 Total: -2.52 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.56 -5.43 -37.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356597616.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.573 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds