Wall clock time and date at job start Thu Apr 9 2020 12:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34327 * 126.44420 * 2 1 4 4 N 1.34476 * 107.66953 * 179.77009 * 3 2 1 5 5 C 1.30255 * 108.70238 * 0.42076 * 4 3 2 6 6 C 1.50699 * 125.62191 * 179.83989 * 5 4 3 7 7 N 1.46906 * 109.47140 * 89.69529 * 6 5 4 8 8 C 1.46898 * 110.99888 * 180.02562 * 7 6 5 9 9 C 1.53007 * 109.46764 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47126 * 304.99895 * 9 8 7 11 11 C 1.47195 * 109.46921 * 65.00197 * 9 8 7 12 12 N 6.81833 * 119.73852 * 137.16809 * 2 1 3 13 13 C 1.53002 * 109.46757 * 185.00049 * 9 8 7 14 14 C 1.50704 * 109.46906 * 174.99987 * 13 9 8 15 15 H 1.08004 * 119.99838 * 0.02562 * 14 13 9 16 16 C 1.37875 * 119.99820 * 180.02562 * 14 13 9 17 17 N 1.31508 * 120.00078 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99828 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47090 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47766 * 119.99679 * 18 16 14 21 21 H 1.48507 * 109.47118 * 239.99896 * 18 16 14 22 22 O 1.33969 * 108.75739 * 359.57720 * 5 4 3 23 23 H 1.08992 * 109.47073 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.46842 * 300.00008 * 1 2 3 25 25 H 1.08995 * 109.46626 * 59.99729 * 1 2 3 26 26 H 1.08007 * 126.16713 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47247 * 329.69551 * 6 5 4 28 28 H 1.09001 * 109.47358 * 209.68977 * 6 5 4 29 29 H 1.00902 * 110.99923 * 303.95945 * 7 6 5 30 30 H 1.08995 * 109.47296 * 299.99911 * 8 7 6 31 31 H 1.08997 * 109.47334 * 60.00212 * 8 7 6 32 32 H 1.09001 * 109.47153 * 294.99578 * 13 9 8 33 33 H 1.08992 * 109.47216 * 55.00087 * 13 9 8 34 34 H 0.97001 * 120.00023 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0051 5 6 3.5766 -0.6548 -0.0008 6 6 4.8005 -1.5340 -0.0014 7 7 5.1986 -1.8201 1.3834 8 6 6.3916 -2.6763 1.4220 9 6 6.7752 -2.9512 2.8775 10 1 6.9017 -2.0055 3.4047 11 6 5.7116 -3.7358 3.5254 12 7 4.8892 -4.3417 4.0249 13 6 8.0868 -3.7378 2.9193 14 6 8.5284 -3.9023 4.3508 15 1 7.9329 -3.4876 5.1507 16 6 9.6927 -4.5821 4.6392 17 7 10.4176 -5.0875 3.6652 18 14 10.2398 -4.7866 6.4135 19 1 9.2565 -4.1315 7.3133 20 1 10.3252 -6.2323 6.7419 21 1 11.5727 -4.1579 6.5962 22 8 2.3075 -1.0840 -0.0005 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8899 26 1 1.9822 2.1113 0.0004 27 1 5.6147 -1.0231 -0.5154 28 1 4.5762 -2.4687 -0.5153 29 1 5.3496 -0.9665 1.8999 30 1 6.1788 -3.6189 0.9178 31 1 7.2166 -2.1729 0.9181 32 1 7.9361 -4.7197 2.4705 33 1 8.8524 -3.1975 2.3627 34 1 11.2365 -5.5661 3.8682 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356597616.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:45 Heat of formation + Delta-G solvation = 11.476197 kcal Electronic energy + Delta-G solvation = -16890.946438 eV Core-core repulsion = 14017.193731 eV Total energy + Delta-G solvation = -2873.752707 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.30385 -38.85109 -36.82375 -35.73316 -35.41263 -33.88528 -32.86673 -29.76279 -27.78181 -25.83364 -24.05800 -23.48997 -23.11958 -21.97753 -18.87876 -18.39433 -17.82356 -17.78588 -16.61877 -16.14869 -15.92649 -15.57932 -15.27679 -14.93181 -14.50437 -14.24795 -14.00574 -13.80488 -13.75134 -13.37883 -13.24214 -13.12101 -13.02582 -12.74048 -12.49219 -12.38973 -12.32504 -11.90300 -11.56673 -11.41623 -11.14981 -10.54338 -9.71320 -9.44927 -8.18767 -6.26240 0.41587 1.39440 1.42918 1.52908 1.61511 1.74400 2.06409 2.13069 2.42358 2.97648 3.16884 3.29079 3.42426 3.84872 4.08132 4.10450 4.26201 4.33204 4.46555 4.57990 4.68770 4.71748 4.77700 4.83549 4.99912 5.05520 5.20309 5.34079 5.49415 5.64324 5.78501 5.84188 6.21780 6.28201 6.73246 6.84433 6.93746 7.42270 8.92225 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.045328 B = 0.003637 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.567445 B = 7696.008250 C = 7927.931814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.053 4.053 3 C -0.063 4.063 4 N -0.500 5.500 5 C 0.182 3.818 6 C 0.158 3.842 7 N -0.702 5.702 8 C 0.080 3.920 9 C 0.019 3.981 10 H 0.119 0.881 11 C 0.264 3.736 12 N -0.517 5.517 13 C 0.038 3.962 14 C -0.539 4.539 15 H 0.052 0.948 16 C 0.012 3.988 17 N -0.922 5.922 18 Si 0.947 3.053 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.273 1.273 22 O -0.214 6.214 23 H 0.077 0.923 24 H 0.105 0.895 25 H 0.112 0.888 26 H 0.208 0.792 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.352 0.648 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.004 0.996 33 H 0.040 0.960 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.673 12.601 -11.012 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.106 4.106 3 C -0.201 4.201 4 N -0.230 5.230 5 C -0.025 4.025 6 C 0.029 3.971 7 N -0.336 5.336 8 C -0.050 4.050 9 C -0.003 4.003 10 H 0.137 0.863 11 C -0.052 4.052 12 N -0.195 5.195 13 C -0.001 4.001 14 C -0.577 4.577 15 H 0.071 0.929 16 C -0.187 4.187 17 N -0.562 5.562 18 Si 0.773 3.227 19 H -0.195 1.195 20 H -0.212 1.212 21 H -0.198 1.198 22 O -0.100 6.100 23 H 0.096 0.904 24 H 0.123 0.877 25 H 0.130 0.870 26 H 0.225 0.775 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.171 0.829 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.023 0.977 33 H 0.059 0.941 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.668 11.379 -10.225 21.898 hybrid contribution 0.899 0.044 0.671 1.123 sum -14.768 11.424 -9.554 20.973 Atomic orbital electron populations 1.20497 0.81180 1.05003 1.05683 1.24344 0.96773 0.84031 1.05425 1.23537 0.87229 1.01759 1.07578 1.70412 1.24543 1.09594 1.18471 1.26441 0.84748 0.90157 1.01143 1.20308 0.87975 0.97457 0.91381 1.60420 1.37914 1.22642 1.12591 1.21942 0.91071 0.98184 0.93766 1.19215 0.88723 0.97554 0.94793 0.86323 1.29480 0.92118 0.92132 0.91448 1.81030 1.14458 1.12142 1.11827 1.19000 0.90119 0.94834 0.96137 1.21595 1.07206 1.35029 0.93850 0.92935 1.25679 0.96951 0.95378 1.00695 1.70024 1.15634 1.37534 1.33031 0.85670 0.78478 0.77624 0.80950 1.19519 1.21183 1.19809 1.84434 1.18410 1.37677 1.69515 0.90390 0.87659 0.87005 0.77496 0.88477 0.87135 0.82905 0.89958 0.90023 0.97741 0.94147 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.43 71.24 0.74 0.04 16 2 C -0.05 -1.06 7.39 24.79 0.18 -0.88 16 3 C -0.06 -1.31 11.80 83.39 0.98 -0.33 16 4 N -0.50 -12.94 11.29 -303.83 -3.43 -16.37 16 5 C 0.18 4.59 7.86 88.34 0.69 5.28 16 6 C 0.16 3.31 6.31 85.56 0.54 3.85 16 7 N -0.70 -17.32 6.19 -517.92 -3.21 -20.52 16 8 C 0.08 2.07 5.05 86.31 0.44 2.50 16 9 C 0.02 0.66 2.35 -12.60 -0.03 0.63 16 10 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 11 C 0.26 10.90 13.67 89.43 1.22 12.12 16 12 N -0.52 -23.66 18.54 20.02 0.37 -23.29 16 13 C 0.04 1.70 4.42 29.85 0.13 1.83 16 14 C -0.54 -28.28 8.60 25.60 0.22 -28.06 16 15 H 0.05 2.76 7.59 -2.91 -0.02 2.73 16 16 C 0.01 0.65 5.46 84.66 0.46 1.11 16 17 N -0.92 -52.43 13.29 21.45 0.28 -52.14 16 18 Si 0.95 43.39 29.54 68.60 2.03 45.42 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 O -0.21 -5.58 10.78 -3.74 -0.04 -5.62 16 23 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.21 2.85 8.06 -2.91 -0.02 2.83 16 27 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.11 2.07 8.14 -2.39 -0.02 2.06 16 29 H 0.35 8.39 8.72 -89.69 -0.78 7.60 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -69.46 308.39 1.92 -67.54 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.33 Total: 6.87 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 5.59 Total: -1.89 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -5.98 Total: -112.32 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.04 Total: -5.62 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -69.46 1.92 -67.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356597616.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.021 kcal (2) G-P(sol) polarization free energy of solvation -69.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds