Wall clock time and date at job start Thu Apr 9 2020 12:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50695 * 119.99925 * 2 1 4 4 C 1.50699 * 119.99488 * 179.97438 * 2 1 3 5 5 C 1.52995 * 109.47272 * 95.00424 * 4 2 1 6 6 C 1.50699 * 109.47267 * 179.97438 * 5 4 2 7 7 O 1.21304 * 120.00152 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99798 * 180.27214 * 6 5 4 9 9 C 1.40595 * 119.99764 * 179.72414 * 8 6 5 10 10 C 1.40646 * 126.08311 * 359.69131 * 9 8 6 11 11 N 1.30914 * 108.38784 * 179.87895 * 10 9 8 12 12 N 1.40065 * 108.40439 * 0.38138 * 11 10 9 13 13 C 1.37327 * 126.06489 * 179.73676 * 12 11 10 14 14 H 1.08003 * 119.99416 * 174.15969 * 13 12 11 15 15 C 1.38979 * 120.00372 * 354.16004 * 13 12 11 16 16 N 1.31300 * 119.99795 * 5.93274 * 15 13 12 17 17 Si 1.86793 * 120.00339 * 185.93961 * 15 13 12 18 18 H 1.48508 * 109.47464 * 94.97550 * 17 15 13 19 19 H 1.48497 * 109.47452 * 214.97875 * 17 15 13 20 20 H 1.48508 * 109.47127 * 334.97858 * 17 15 13 21 21 C 1.35686 * 126.08204 * 180.02562 * 9 8 6 22 22 H 1.08003 * 119.99681 * 359.97438 * 1 2 3 23 23 H 1.07996 * 119.99982 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47011 * 239.99690 * 3 2 1 25 25 H 1.08996 * 109.47633 * 0.02562 * 3 2 1 26 26 H 1.09006 * 109.46557 * 119.99872 * 3 2 1 27 27 H 1.08996 * 109.47550 * 334.99651 * 4 2 1 28 28 H 1.09007 * 109.46919 * 215.00190 * 4 2 1 29 29 H 1.09004 * 109.47302 * 59.99445 * 5 4 2 30 30 H 1.08998 * 109.47099 * 300.00029 * 5 4 2 31 31 H 0.97001 * 120.00137 * 359.73317 * 8 6 5 32 32 H 1.07998 * 125.80732 * 0.02562 * 10 9 8 33 33 H 0.96997 * 119.99732 * 180.02562 * 16 15 13 34 34 H 1.07995 * 126.24184 * 359.92839 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 6 2.4274 -1.6846 -1.4362 6 6 3.1813 -2.9895 -1.4355 7 8 3.4060 -3.5597 -0.3887 8 7 3.6113 -3.5199 -2.5976 9 6 4.3197 -4.7343 -2.5964 10 6 4.6543 -5.4970 -1.4631 11 7 5.3094 -6.5591 -1.8588 12 7 5.4263 -6.5123 -3.2538 13 6 6.0527 -7.4443 -4.0443 14 1 6.0040 -7.3602 -5.1200 15 6 6.7494 -8.4955 -3.4603 16 7 6.7121 -8.6649 -2.1588 17 14 7.7387 -9.6673 -4.5267 18 1 9.1543 -9.2205 -4.5715 19 1 7.6695 -11.0358 -3.9543 20 1 7.1790 -9.6771 -5.9022 21 6 4.8077 -5.3758 -3.6880 22 1 -0.5400 0.9354 0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 2.6902 1.3628 -0.8899 25 1 1.3553 2.1336 0.0005 26 1 2.6902 1.3627 0.8901 27 1 1.4386 -2.0853 0.4353 28 1 2.9742 -1.1987 0.5900 29 1 3.0524 -0.9045 -1.8709 30 1 1.5168 -1.7910 -2.0256 31 1 3.4320 -3.0637 -3.4346 32 1 4.4101 -5.2499 -0.4406 33 1 7.1986 -9.3984 -1.7511 34 1 4.7216 -5.0473 -4.7131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357847113.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:47 Heat of formation + Delta-G solvation = 51.204797 kcal Electronic energy + Delta-G solvation = -17178.698291 eV Core-core repulsion = 14306.668345 eV Total energy + Delta-G solvation = -2872.029946 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.89152 -38.67331 -36.42413 -34.14839 -33.11737 -31.25057 -30.14628 -27.79576 -27.36575 -25.19955 -24.00446 -20.97157 -20.08008 -19.36234 -18.46710 -17.43446 -16.35301 -15.56309 -15.43134 -15.23295 -14.61748 -14.15770 -14.03643 -13.60628 -13.27819 -13.07448 -12.83907 -12.44792 -12.05472 -11.81539 -11.66607 -11.38669 -11.25722 -11.07241 -10.90518 -10.87006 -10.51456 -10.10131 -9.28083 -9.13931 -9.00749 -8.76759 -8.02734 -6.66169 -6.54076 -4.20541 2.10162 2.87807 3.05875 3.07548 3.11522 3.67702 3.71217 3.92164 4.45605 4.68083 4.81035 4.89627 5.03161 5.09505 5.22554 5.33608 5.44841 5.48451 5.69941 5.78283 5.79650 5.96112 6.19205 6.27183 6.50216 6.53487 6.78366 6.94496 6.99808 7.17144 7.28224 7.88896 8.23034 8.33342 8.67083 8.92483 9.41038 9.70128 10.42329 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.078190 B = 0.003664 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.015598 B = 7640.314997 C = 7808.616636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.071 4.071 5 C -0.128 4.128 6 C 0.496 3.504 7 O -0.538 6.538 8 N -0.627 5.627 9 C -0.060 4.060 10 C -0.034 4.034 11 N -0.261 5.261 12 N -0.144 5.144 13 C -0.325 4.325 14 H 0.116 0.884 15 C 0.046 3.954 16 N -0.770 5.770 17 Si 0.934 3.066 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.264 1.264 21 C -0.084 4.084 22 H 0.095 0.905 23 H 0.097 0.903 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.396 0.604 32 H 0.176 0.824 33 H 0.274 0.726 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.459 14.018 -1.432 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.123 4.123 3 C -0.177 4.177 4 C -0.109 4.109 5 C -0.168 4.168 6 C 0.282 3.718 7 O -0.416 6.416 8 N -0.270 5.270 9 C -0.165 4.165 10 C -0.210 4.210 11 N -0.093 5.093 12 N 0.088 4.912 13 C -0.457 4.457 14 H 0.133 0.867 15 C -0.171 4.171 16 N -0.397 5.397 17 Si 0.758 3.242 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.188 1.188 21 C -0.235 4.235 22 H 0.113 0.887 23 H 0.116 0.884 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.229 0.771 32 H 0.193 0.807 33 H 0.085 0.915 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.629 12.374 -0.129 14.038 hybrid contribution -0.127 0.534 -1.326 1.435 sum -6.756 12.907 -1.454 14.641 Atomic orbital electron populations 1.23727 0.95217 1.01733 1.03047 1.21837 0.95465 0.95844 0.99126 1.20892 1.00224 0.94267 1.02341 1.20394 1.00933 0.93906 0.95633 1.21549 1.00924 0.95385 0.98989 1.20467 0.80696 0.86940 0.83685 1.90592 1.57161 1.62369 1.31432 1.42578 1.54069 1.21793 1.08530 1.17320 1.12498 0.92361 0.94369 1.24111 1.03549 0.94419 0.98885 1.78239 1.22598 1.19820 0.88604 1.44542 1.30074 1.11903 1.04680 1.19865 1.30959 1.04627 0.90221 0.86656 1.25640 0.97136 0.98104 0.96198 1.70229 1.33031 1.26911 1.09505 0.85817 0.79732 0.78969 0.79644 1.19662 1.20117 1.18807 1.21271 1.11256 0.93822 0.97165 0.88713 0.88442 0.91505 0.92229 0.91512 0.90434 0.90388 0.89320 0.89315 0.77085 0.80742 0.91507 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 13.90 29.01 0.40 -1.44 16 2 C -0.12 -1.21 5.31 -101.07 -0.54 -1.75 16 3 C -0.12 -0.99 10.12 36.00 0.36 -0.62 16 4 C -0.07 -0.85 4.67 -27.89 -0.13 -0.98 16 5 C -0.13 -1.51 5.68 -27.89 -0.16 -1.67 16 6 C 0.50 8.59 7.80 -10.99 -0.09 8.50 16 7 O -0.54 -11.58 13.13 5.54 0.07 -11.50 16 8 N -0.63 -11.21 5.47 -10.00 -0.05 -11.27 16 9 C -0.06 -1.41 6.90 -83.84 -0.58 -1.99 16 10 C -0.03 -0.92 10.85 -17.03 -0.18 -1.10 16 11 N -0.26 -7.75 10.42 30.80 0.32 -7.43 16 12 N -0.14 -4.02 3.74 -11.41 -0.04 -4.07 16 13 C -0.32 -8.71 10.24 -14.82 -0.15 -8.86 16 14 H 0.12 2.76 7.84 -52.48 -0.41 2.35 16 15 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 16 N -0.77 -21.80 11.84 55.49 0.66 -21.15 16 17 Si 0.93 19.11 29.55 -169.99 -5.02 14.09 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 C -0.08 -2.02 11.49 -16.39 -0.19 -2.20 16 22 H 0.09 0.74 7.83 -52.48 -0.41 0.33 16 23 H 0.10 0.90 7.99 -52.49 -0.42 0.48 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.42 7.78 -51.93 -0.40 0.02 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.02 7.94 -51.93 -0.41 0.61 16 28 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.40 5.39 8.83 -40.82 -0.36 5.03 16 32 H 0.18 4.67 5.92 -52.49 -0.31 4.36 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.15 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 299.10 15.07 4.51 4.51 Total: -1.00 -33.45 299.10 -5.30 -38.76 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -4.40 Total: 9.05 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -1.34 Total: -10.99 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.88 Total: -43.91 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.45 -5.30 -38.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357847113.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.961 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds