Wall clock time and date at job start Thu Apr 9 2020 12:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50695 * 119.99925 * 2 1 4 4 C 1.50699 * 119.99488 * 179.97438 * 2 1 3 5 5 C 1.52995 * 109.47272 * 95.00424 * 4 2 1 6 6 C 1.50699 * 109.47267 * 179.97438 * 5 4 2 7 7 O 1.21304 * 120.00152 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99798 * 180.27214 * 6 5 4 9 9 C 1.40595 * 119.99764 * 179.72414 * 8 6 5 10 10 C 1.40646 * 126.08311 * 359.69131 * 9 8 6 11 11 N 1.30914 * 108.38784 * 179.87895 * 10 9 8 12 12 N 1.40065 * 108.40439 * 0.38138 * 11 10 9 13 13 C 1.37327 * 126.06489 * 179.73676 * 12 11 10 14 14 H 1.08003 * 119.99416 * 174.15969 * 13 12 11 15 15 C 1.38979 * 120.00372 * 354.16004 * 13 12 11 16 16 N 1.31300 * 119.99795 * 5.93274 * 15 13 12 17 17 Si 1.86793 * 120.00339 * 185.93961 * 15 13 12 18 18 H 1.48508 * 109.47464 * 94.97550 * 17 15 13 19 19 H 1.48497 * 109.47452 * 214.97875 * 17 15 13 20 20 H 1.48508 * 109.47127 * 334.97858 * 17 15 13 21 21 C 1.35686 * 126.08204 * 180.02562 * 9 8 6 22 22 H 1.08003 * 119.99681 * 359.97438 * 1 2 3 23 23 H 1.07996 * 119.99982 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47011 * 239.99690 * 3 2 1 25 25 H 1.08996 * 109.47633 * 0.02562 * 3 2 1 26 26 H 1.09006 * 109.46557 * 119.99872 * 3 2 1 27 27 H 1.08996 * 109.47550 * 334.99651 * 4 2 1 28 28 H 1.09007 * 109.46919 * 215.00190 * 4 2 1 29 29 H 1.09004 * 109.47302 * 59.99445 * 5 4 2 30 30 H 1.08998 * 109.47099 * 300.00029 * 5 4 2 31 31 H 0.97001 * 120.00137 * 359.73317 * 8 6 5 32 32 H 1.07998 * 125.80732 * 0.02562 * 10 9 8 33 33 H 0.96997 * 119.99732 * 180.02562 * 16 15 13 34 34 H 1.07995 * 126.24184 * 359.92839 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 6 2.4274 -1.6846 -1.4362 6 6 3.1813 -2.9895 -1.4355 7 8 3.4060 -3.5597 -0.3887 8 7 3.6113 -3.5199 -2.5976 9 6 4.3197 -4.7343 -2.5964 10 6 4.6543 -5.4970 -1.4631 11 7 5.3094 -6.5591 -1.8588 12 7 5.4263 -6.5123 -3.2538 13 6 6.0527 -7.4443 -4.0443 14 1 6.0040 -7.3602 -5.1200 15 6 6.7494 -8.4955 -3.4603 16 7 6.7121 -8.6649 -2.1588 17 14 7.7387 -9.6673 -4.5267 18 1 9.1543 -9.2205 -4.5715 19 1 7.6695 -11.0358 -3.9543 20 1 7.1790 -9.6771 -5.9022 21 6 4.8077 -5.3758 -3.6880 22 1 -0.5400 0.9354 0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 2.6902 1.3628 -0.8899 25 1 1.3553 2.1336 0.0005 26 1 2.6902 1.3627 0.8901 27 1 1.4386 -2.0853 0.4353 28 1 2.9742 -1.1987 0.5900 29 1 3.0524 -0.9045 -1.8709 30 1 1.5168 -1.7910 -2.0256 31 1 3.4320 -3.0637 -3.4346 32 1 4.4101 -5.2499 -0.4406 33 1 7.1986 -9.3984 -1.7511 34 1 4.7216 -5.0473 -4.7131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357847113.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:47 Heat of formation + Delta-G solvation = 28.703003 kcal Electronic energy + Delta-G solvation = -17179.674042 eV Core-core repulsion = 14306.668345 eV Total energy + Delta-G solvation = -2873.005697 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.69300 -40.28312 -37.31056 -35.88066 -34.93807 -32.48111 -31.97051 -29.57742 -28.04616 -26.96213 -25.32347 -22.84898 -21.68153 -21.14339 -19.45950 -19.06707 -17.78424 -17.36905 -16.86651 -16.69655 -15.78180 -15.59963 -15.35820 -14.96222 -14.82926 -14.61300 -14.03806 -13.49622 -13.48950 -13.29964 -12.97916 -12.91431 -12.79286 -12.46246 -12.06514 -11.90785 -11.81123 -11.77594 -11.00892 -10.82941 -10.63867 -10.09820 -9.88113 -8.51297 -8.47176 -6.24275 1.23361 1.35594 1.40080 1.55898 1.58398 1.88510 2.08258 2.38622 2.54207 2.94860 3.08186 3.81265 4.02434 4.09497 4.33702 4.40963 4.46071 4.62054 4.71166 4.77573 4.92074 5.00813 5.01245 5.11160 5.12725 5.20584 5.24988 5.30418 5.52331 5.79677 5.96713 6.04748 6.33101 6.74387 6.81471 7.44436 7.49789 7.69344 8.52543 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.078190 B = 0.003664 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.015598 B = 7640.314997 C = 7808.616636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 C -0.120 4.120 4 C -0.070 4.070 5 C -0.112 4.112 6 C 0.492 3.508 7 O -0.584 6.584 8 N -0.619 5.619 9 C -0.046 4.046 10 C -0.063 4.063 11 N -0.312 5.312 12 N -0.170 5.170 13 C -0.356 4.356 14 H 0.141 0.859 15 C -0.008 4.008 16 N -0.826 5.826 17 Si 1.021 2.979 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.242 1.242 21 C -0.081 4.081 22 H 0.113 0.887 23 H 0.093 0.907 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.421 0.579 32 H 0.166 0.834 33 H 0.276 0.724 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.121 15.818 -3.936 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.131 4.131 3 C -0.177 4.177 4 C -0.108 4.108 5 C -0.152 4.152 6 C 0.281 3.719 7 O -0.464 6.464 8 N -0.264 5.264 9 C -0.152 4.152 10 C -0.238 4.238 11 N -0.145 5.145 12 N 0.061 4.939 13 C -0.486 4.486 14 H 0.159 0.841 15 C -0.219 4.219 16 N -0.454 5.454 17 Si 0.839 3.161 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.165 1.165 21 C -0.231 4.231 22 H 0.131 0.869 23 H 0.112 0.888 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.258 0.742 32 H 0.183 0.817 33 H 0.086 0.914 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.329 14.235 -2.666 16.232 hybrid contribution -0.040 0.102 -0.487 0.499 sum -7.369 14.337 -3.153 16.425 Atomic orbital electron populations 1.23890 0.95057 1.02481 1.01706 1.21777 0.95646 0.95356 1.00329 1.20916 1.00491 0.93641 1.02622 1.20332 1.00189 0.94804 0.95494 1.21563 1.01640 0.92436 0.99520 1.21591 0.79657 0.88100 0.82557 1.90585 1.58650 1.63954 1.33206 1.42573 1.53486 1.20122 1.10269 1.17422 1.11294 0.93593 0.92882 1.24158 1.04687 0.95307 0.99645 1.78132 1.24320 1.21500 0.90508 1.44852 1.31385 1.13474 1.04188 1.20631 1.31405 1.05162 0.91448 0.84136 1.26908 0.97739 0.99754 0.97493 1.70413 1.34737 1.28162 1.12078 0.84561 0.77622 0.75658 0.78237 1.19170 1.20178 1.16469 1.22029 1.09449 0.92499 0.99155 0.86890 0.88827 0.90685 0.90815 0.91815 0.92393 0.92037 0.86168 0.86524 0.74193 0.81737 0.91428 0.79404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 13.90 67.77 0.94 -2.15 16 2 C -0.13 -2.29 5.31 -16.50 -0.09 -2.38 16 3 C -0.12 -1.64 10.12 71.23 0.72 -0.92 16 4 C -0.07 -1.60 4.67 29.85 0.14 -1.47 16 5 C -0.11 -2.34 5.68 29.85 0.17 -2.17 16 6 C 0.49 16.52 7.80 87.66 0.68 17.20 16 7 O -0.58 -25.72 13.13 -3.10 -0.04 -25.76 16 8 N -0.62 -20.98 5.47 -303.92 -1.66 -22.64 16 9 C -0.05 -2.13 6.90 37.73 0.26 -1.87 16 10 C -0.06 -3.52 10.85 85.42 0.93 -2.59 16 11 N -0.31 -19.29 10.42 -56.47 -0.59 -19.88 16 12 N -0.17 -9.59 3.74 -190.02 -0.71 -10.30 16 13 C -0.36 -19.06 10.24 84.01 0.86 -18.20 16 14 H 0.14 6.51 7.84 -2.91 -0.02 6.48 16 15 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 16 N -0.83 -48.48 11.84 21.66 0.26 -48.22 16 17 Si 1.02 38.97 29.55 68.60 2.03 41.00 16 18 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 19 H -0.28 -10.45 7.11 99.48 0.71 -9.75 16 20 H -0.24 -8.27 7.11 99.48 0.71 -7.56 16 21 C -0.08 -3.79 11.49 83.38 0.96 -2.83 16 22 H 0.11 1.40 7.83 -2.91 -0.02 1.37 16 23 H 0.09 1.55 7.99 -2.91 -0.02 1.52 16 24 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 0.80 7.78 -2.39 -0.02 0.78 16 26 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.06 1.53 7.94 -2.39 -0.02 1.51 16 28 H 0.06 1.59 8.10 -2.38 -0.02 1.57 16 29 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.42 9.99 8.83 -92.71 -0.82 9.17 16 32 H 0.17 9.36 5.92 -2.91 -0.02 9.34 16 33 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.19 6.85 8.06 -2.91 -0.02 6.82 16 Total: -1.00 -77.08 299.10 5.61 -71.47 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.29 Total: 31.64 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 6.04 Total: -17.30 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -2.70 Total: -101.04 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.04 Total: -25.76 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -77.08 5.61 -71.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357847113.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.171 kcal (2) G-P(sol) polarization free energy of solvation -77.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds