Wall clock time and date at job start Thu Apr 9 2020 12:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50694 * 109.47087 * 2 1 4 4 N 1.32168 * 120.53913 * 264.29165 * 3 2 1 5 5 C 1.31852 * 120.96877 * 180.27378 * 4 3 2 6 6 C 1.50697 * 118.95227 * 179.74884 * 5 4 3 7 7 N 1.31882 * 122.09558 * 359.71905 * 5 4 3 8 8 C 1.32128 * 120.96952 * 0.02562 * 7 5 4 9 9 C 1.39933 * 120.53896 * 84.02984 * 3 2 1 10 10 C 1.47826 * 120.93648 * 0.02562 * 9 3 2 11 11 O 1.21550 * 120.00196 * 353.93220 * 10 9 3 12 12 N 1.34775 * 119.99723 * 173.93089 * 10 9 3 13 13 C 1.46501 * 119.99913 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.47122 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99764 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99800 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00356 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99682 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47142 * 60.00202 * 18 16 14 20 20 H 1.48499 * 109.46941 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47319 * 299.99964 * 18 16 14 22 22 H 1.08996 * 109.47380 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47095 * 300.00521 * 1 2 3 24 24 H 1.09002 * 109.46861 * 59.99964 * 1 2 3 25 25 H 1.09001 * 109.46600 * 240.00067 * 2 1 3 26 26 H 1.09002 * 109.46861 * 120.00036 * 2 1 3 27 27 H 1.09002 * 109.46994 * 269.97412 * 6 5 4 28 28 H 1.08999 * 109.47252 * 29.97335 * 6 5 4 29 29 H 1.08997 * 109.47341 * 149.97529 * 6 5 4 30 30 H 1.08004 * 120.54329 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00475 * 359.97438 * 12 10 9 32 32 H 1.08999 * 109.46994 * 299.99584 * 13 12 10 33 33 H 1.08994 * 109.47218 * 60.00216 * 13 12 10 34 34 H 0.96991 * 120.00205 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3630 2.0162 -1.1327 5 6 2.8084 3.2571 -1.1420 6 6 3.1776 3.8898 -2.4589 7 7 2.9407 3.9625 -0.0355 8 6 2.6287 3.4474 1.1405 9 6 2.1512 2.1329 1.1987 10 6 1.7890 1.5122 2.4905 11 8 1.2785 0.4094 2.5130 12 7 2.0250 2.1692 3.6434 13 6 1.6667 1.5538 4.9237 14 6 2.0312 2.4874 6.0492 15 1 2.4840 3.4436 5.8325 16 6 1.7855 2.1212 7.3556 17 7 1.2327 0.9574 7.6195 18 14 2.2379 3.2781 8.7507 19 1 1.5004 4.5572 8.5920 20 1 1.8734 2.6549 10.0484 21 1 3.6989 3.5420 8.7209 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 4.2293 3.6980 -2.6720 28 1 2.5627 3.4639 -3.2518 29 1 3.0080 4.9652 -2.4057 30 1 2.7401 4.0311 2.0424 31 1 2.4328 3.0491 3.6256 32 1 0.5943 1.3598 4.9460 33 1 2.2083 0.6152 5.0399 34 1 1.0602 0.6997 8.5385 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001448605253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:49 Heat of formation + Delta-G solvation = -3.499695 kcal Electronic energy + Delta-G solvation = -17673.957933 eV Core-core repulsion = 14799.555823 eV Total energy + Delta-G solvation = -2874.402111 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.28632 -38.73332 -35.33232 -34.13016 -33.53450 -32.39586 -31.22386 -29.12717 -27.07877 -24.98992 -23.90591 -22.69605 -21.34398 -20.17632 -17.89178 -17.74487 -16.20163 -15.81353 -15.45327 -15.09364 -14.47875 -14.37166 -14.04286 -13.65877 -13.50637 -12.93386 -12.88202 -12.57272 -12.23507 -12.04913 -11.94708 -11.51990 -11.40587 -11.06854 -10.95073 -10.76137 -10.54771 -10.34702 -9.50152 -9.36837 -9.27555 -9.12069 -8.80200 -8.01150 -6.22703 -4.30340 0.53114 1.03123 3.20102 3.22284 3.27420 3.28460 3.73095 3.86718 3.90150 4.00842 4.30635 4.40959 4.88111 5.02056 5.13845 5.21622 5.35140 5.38716 5.42995 5.55122 5.62135 5.74025 5.88252 6.11512 6.26464 6.41911 6.49382 6.93445 7.19158 7.25731 7.41569 7.56058 7.88307 8.01182 8.44404 8.65749 8.89553 9.36260 10.87314 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.030699 B = 0.005112 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.858099 B = 5475.773930 C = 6295.282627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.081 4.081 3 C 0.236 3.764 4 N -0.525 5.525 5 C 0.326 3.674 6 C -0.085 4.085 7 N -0.528 5.528 8 C 0.183 3.817 9 C -0.238 4.238 10 C 0.549 3.451 11 O -0.535 6.535 12 N -0.702 5.702 13 C 0.250 3.750 14 C -0.547 4.547 15 H 0.063 0.937 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.174 0.826 31 H 0.389 0.611 32 H 0.031 0.969 33 H 0.031 0.969 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.488 3.938 -15.781 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 C 0.089 3.911 4 N -0.240 5.240 5 C 0.060 3.940 6 C -0.143 4.143 7 N -0.243 5.243 8 C 0.016 3.984 9 C -0.246 4.246 10 C 0.333 3.667 11 O -0.415 6.415 12 N -0.349 5.349 13 C 0.130 3.870 14 C -0.586 4.586 15 H 0.081 0.919 16 C -0.138 4.138 17 N -0.521 5.521 18 Si 0.731 3.269 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.132 0.868 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.190 0.810 31 H 0.223 0.777 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.295 3.448 -16.429 16.943 hybrid contribution 0.258 0.761 1.746 1.922 sum 2.553 4.208 -14.683 15.486 Atomic orbital electron populations 1.21555 0.93247 1.02399 1.01730 1.20815 0.97450 0.88929 1.04651 1.22010 0.86196 0.96587 0.86337 1.68201 1.14481 1.11414 1.29887 1.23429 0.88968 0.86695 0.94926 1.20584 1.02789 1.00910 0.90030 1.68253 1.18954 1.38339 0.98747 1.23525 0.87334 0.91276 0.96223 1.21915 1.07694 0.97652 0.97294 1.17739 0.80157 0.85717 0.83096 1.90694 1.44286 1.19587 1.86936 1.46442 1.60589 1.20657 1.07254 1.19188 0.96695 0.94109 0.76978 1.21163 1.43012 1.03461 0.90925 0.91891 1.24931 0.94629 0.95411 0.98853 1.69950 1.41497 1.20254 1.20446 0.86464 0.78979 0.80624 0.80810 1.20016 1.21023 1.20018 0.91747 0.91505 0.93619 0.90643 0.86763 0.89496 0.89575 0.89524 0.80955 0.77746 0.95106 0.95123 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.51 37.16 0.35 -1.50 16 2 C -0.08 -1.19 5.49 -27.88 -0.15 -1.34 16 3 C 0.24 3.71 6.12 -81.82 -0.50 3.21 16 4 N -0.52 -7.78 10.26 -6.68 -0.07 -7.85 16 5 C 0.33 4.41 7.64 -157.07 -1.20 3.21 16 6 C -0.08 -0.77 10.31 36.00 0.37 -0.39 16 7 N -0.53 -7.53 10.31 -10.39 -0.11 -7.64 16 8 C 0.18 2.64 10.80 -16.77 -0.18 2.46 16 9 C -0.24 -3.89 5.91 -104.69 -0.62 -4.51 16 10 C 0.55 10.63 7.73 -12.34 -0.10 10.54 16 11 O -0.54 -11.62 12.04 5.32 0.06 -11.56 16 12 N -0.70 -14.12 5.50 -62.44 -0.34 -14.47 16 13 C 0.25 6.34 5.43 -5.19 -0.03 6.31 16 14 C -0.55 -14.33 9.28 -34.44 -0.32 -14.65 16 15 H 0.06 1.53 7.60 -52.49 -0.40 1.14 16 16 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.88 -25.35 13.29 55.43 0.74 -24.61 16 18 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.07 1.09 6.90 -51.93 -0.36 0.74 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.11 1.89 5.93 -51.93 -0.31 1.58 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.17 2.06 6.58 -52.48 -0.35 1.71 16 31 H 0.39 6.68 6.49 -40.82 -0.26 6.42 16 32 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 292.87 15.07 4.41 4.41 Total: -1.00 -30.51 292.87 -6.99 -37.49 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.19 Total: 3.86 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -2.47 Total: 5.01 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.22 Total: -54.57 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.06 Total: -11.56 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.51 -6.99 -37.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001448605253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.995 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds