Wall clock time and date at job start Thu Apr 9 2020 12:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50694 * 109.47087 * 2 1 4 4 N 1.32168 * 120.53913 * 264.29165 * 3 2 1 5 5 C 1.31852 * 120.96877 * 180.27378 * 4 3 2 6 6 C 1.50697 * 118.95227 * 179.74884 * 5 4 3 7 7 N 1.31882 * 122.09558 * 359.71905 * 5 4 3 8 8 C 1.32128 * 120.96952 * 0.02562 * 7 5 4 9 9 C 1.39933 * 120.53896 * 84.02984 * 3 2 1 10 10 C 1.47826 * 120.93648 * 0.02562 * 9 3 2 11 11 O 1.21550 * 120.00196 * 353.93220 * 10 9 3 12 12 N 1.34775 * 119.99723 * 173.93089 * 10 9 3 13 13 C 1.46501 * 119.99913 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.47122 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99764 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99800 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00356 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99682 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47142 * 60.00202 * 18 16 14 20 20 H 1.48499 * 109.46941 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47319 * 299.99964 * 18 16 14 22 22 H 1.08996 * 109.47380 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47095 * 300.00521 * 1 2 3 24 24 H 1.09002 * 109.46861 * 59.99964 * 1 2 3 25 25 H 1.09001 * 109.46600 * 240.00067 * 2 1 3 26 26 H 1.09002 * 109.46861 * 120.00036 * 2 1 3 27 27 H 1.09002 * 109.46994 * 269.97412 * 6 5 4 28 28 H 1.08999 * 109.47252 * 29.97335 * 6 5 4 29 29 H 1.08997 * 109.47341 * 149.97529 * 6 5 4 30 30 H 1.08004 * 120.54329 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00475 * 359.97438 * 12 10 9 32 32 H 1.08999 * 109.46994 * 299.99584 * 13 12 10 33 33 H 1.08994 * 109.47218 * 60.00216 * 13 12 10 34 34 H 0.96991 * 120.00205 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3630 2.0162 -1.1327 5 6 2.8084 3.2571 -1.1420 6 6 3.1776 3.8898 -2.4589 7 7 2.9407 3.9625 -0.0355 8 6 2.6287 3.4474 1.1405 9 6 2.1512 2.1329 1.1987 10 6 1.7890 1.5122 2.4905 11 8 1.2785 0.4094 2.5130 12 7 2.0250 2.1692 3.6434 13 6 1.6667 1.5538 4.9237 14 6 2.0312 2.4874 6.0492 15 1 2.4840 3.4436 5.8325 16 6 1.7855 2.1212 7.3556 17 7 1.2327 0.9574 7.6195 18 14 2.2379 3.2781 8.7507 19 1 1.5004 4.5572 8.5920 20 1 1.8734 2.6549 10.0484 21 1 3.6989 3.5420 8.7209 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 4.2293 3.6980 -2.6720 28 1 2.5627 3.4639 -3.2518 29 1 3.0080 4.9652 -2.4057 30 1 2.7401 4.0311 2.0424 31 1 2.4328 3.0491 3.6256 32 1 0.5943 1.3598 4.9460 33 1 2.2083 0.6152 5.0399 34 1 1.0602 0.6997 8.5385 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001448605253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:49 Heat of formation + Delta-G solvation = -24.310652 kcal Electronic energy + Delta-G solvation = -17674.860364 eV Core-core repulsion = 14799.555823 eV Total energy + Delta-G solvation = -2875.304542 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.47798 -40.28659 -36.72615 -35.75572 -34.81379 -34.17388 -32.38797 -30.36447 -28.81375 -26.19730 -25.25193 -24.39560 -22.55400 -21.77212 -19.48751 -18.98007 -17.89136 -17.14856 -16.84309 -16.65313 -16.21116 -15.86221 -15.23720 -15.03426 -14.77332 -14.26230 -14.06199 -13.93957 -13.71879 -13.26555 -13.20132 -12.95011 -12.74799 -12.68861 -12.54945 -12.24110 -11.99231 -11.69064 -11.50901 -10.79560 -10.70156 -10.57934 -10.41952 -9.84228 -8.28519 -6.44688 -0.66434 -0.13568 1.44877 1.48024 1.56069 1.79584 2.21279 2.44926 2.62624 2.80133 2.88815 3.07078 3.25634 3.64425 3.81767 4.07248 4.24086 4.37112 4.41485 4.66255 4.71712 4.80877 4.93059 4.98948 5.09703 5.17938 5.25075 5.26296 5.34964 5.46376 5.63989 5.78524 5.83846 6.63094 6.76395 6.89420 7.20205 7.34834 8.83137 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.030699 B = 0.005112 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.858099 B = 5475.773930 C = 6295.282627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.079 4.079 3 C 0.232 3.768 4 N -0.531 5.531 5 C 0.326 3.674 6 C -0.083 4.083 7 N -0.533 5.533 8 C 0.195 3.805 9 C -0.259 4.259 10 C 0.552 3.448 11 O -0.564 6.564 12 N -0.698 5.698 13 C 0.269 3.731 14 C -0.559 4.559 15 H 0.084 0.916 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.981 3.019 19 H -0.263 1.263 20 H -0.286 1.286 21 H -0.263 1.263 22 H 0.077 0.923 23 H 0.037 0.963 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.195 0.805 31 H 0.405 0.595 32 H -0.005 1.005 33 H -0.005 1.005 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.552 6.113 -17.046 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.117 4.117 3 C 0.086 3.914 4 N -0.246 5.246 5 C 0.061 3.939 6 C -0.141 4.141 7 N -0.248 5.248 8 C 0.027 3.973 9 C -0.266 4.266 10 C 0.338 3.662 11 O -0.445 6.445 12 N -0.348 5.348 13 C 0.146 3.854 14 C -0.596 4.596 15 H 0.102 0.898 16 C -0.192 4.192 17 N -0.567 5.567 18 Si 0.804 3.196 19 H -0.187 1.187 20 H -0.212 1.212 21 H -0.188 1.188 22 H 0.096 0.904 23 H 0.056 0.944 24 H 0.077 0.923 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.124 0.876 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.212 0.788 31 H 0.242 0.758 32 H 0.013 0.987 33 H 0.013 0.987 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.376 5.656 -17.745 18.928 hybrid contribution -0.066 0.070 1.993 1.995 sum 3.310 5.726 -15.752 17.084 Atomic orbital electron populations 1.21490 0.92865 1.03061 1.00849 1.20775 0.97724 0.88728 1.04489 1.22161 0.85762 0.96928 0.86576 1.68325 1.15194 1.12136 1.28982 1.24394 0.86911 0.86232 0.96380 1.20794 1.04043 1.01494 0.87797 1.68418 1.19395 1.38216 0.98779 1.23859 0.85649 0.90400 0.97343 1.21578 1.10597 0.98871 0.95585 1.18150 0.79005 0.85225 0.83844 1.90684 1.45310 1.21006 1.87531 1.46104 1.61318 1.21399 1.05951 1.18619 0.93965 0.93243 0.79526 1.21577 1.42689 1.04162 0.91198 0.89817 1.25982 0.94288 0.97000 1.01922 1.70108 1.42935 1.22520 1.21119 0.85260 0.79191 0.78368 0.76740 1.18741 1.21189 1.18763 0.90406 0.94398 0.92251 0.88546 0.89030 0.87608 0.88255 0.88041 0.78789 0.75840 0.98680 0.98694 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.51 9.51 71.98 0.68 -2.83 16 2 C -0.08 -2.33 5.49 29.85 0.16 -2.17 16 3 C 0.23 7.17 6.12 42.92 0.26 7.43 16 4 N -0.53 -14.72 10.26 -175.03 -1.80 -16.51 16 5 C 0.33 7.96 7.64 138.71 1.06 9.02 16 6 C -0.08 -1.21 10.31 71.23 0.73 -0.47 16 7 N -0.53 -13.89 10.31 -186.79 -1.93 -15.82 16 8 C 0.19 5.28 10.80 85.07 0.92 6.20 16 9 C -0.26 -8.36 5.91 -19.91 -0.12 -8.48 16 10 C 0.55 21.96 7.73 86.78 0.67 22.63 16 11 O -0.56 -25.75 12.04 -3.87 -0.05 -25.79 16 12 N -0.70 -28.64 5.50 -469.73 -2.59 -31.22 16 13 C 0.27 14.16 5.43 85.63 0.46 14.62 16 14 C -0.56 -29.39 9.28 25.60 0.24 -29.15 16 15 H 0.08 3.96 7.60 -2.91 -0.02 3.93 16 16 C 0.01 0.44 5.46 84.66 0.46 0.90 16 17 N -0.93 -54.62 13.29 21.45 0.28 -54.33 16 18 Si 0.98 41.36 29.54 68.60 2.03 43.39 16 19 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 20 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 22 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.04 1.27 6.90 -2.39 -0.02 1.26 16 24 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.10 2.37 8.14 -2.39 -0.02 2.36 16 26 H 0.09 3.14 5.93 -2.39 -0.01 3.12 16 27 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.20 4.21 6.58 -2.91 -0.02 4.20 16 31 H 0.41 13.67 6.49 -92.71 -0.60 13.07 16 32 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -67.21 292.87 2.02 -65.19 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.52 Total: 17.39 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 5.54 Total: 17.71 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -6.02 Total: -117.88 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.05 Total: -25.79 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -67.21 2.02 -65.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001448605253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.882 kcal (2) G-P(sol) polarization free energy of solvation -67.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds