Wall clock time and date at job start Thu Apr 9 2020 12:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38592 * 120.80152 * 2 1 4 4 N 1.32343 * 119.10394 * 179.97438 * 3 2 1 5 5 C 1.31795 * 120.81611 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.11888 * 180.02562 * 5 4 3 7 7 N 1.46895 * 109.46946 * 90.00194 * 6 5 4 8 8 C 1.47965 * 111.00064 * 169.99792 * 7 6 5 9 9 C 1.53931 * 86.18239 * 222.42041 * 8 7 6 10 10 O 1.42894 * 113.73160 * 269.25510 * 9 8 7 11 11 C 1.50703 * 113.73518 * 138.07915 * 9 8 7 12 12 H 1.08000 * 119.99719 * 17.15762 * 11 9 8 13 13 C 1.37873 * 119.99883 * 197.15659 * 11 9 8 14 14 N 1.31515 * 119.99606 * 194.39693 * 13 11 9 15 15 Si 1.86800 * 120.00373 * 14.40572 * 13 11 9 16 16 H 1.48497 * 109.47317 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.46658 * 299.99749 * 15 13 11 18 18 H 1.48498 * 109.47245 * 59.99510 * 15 13 11 19 19 C 1.48191 * 111.07148 * 70.56952 * 7 6 5 20 20 N 1.31795 * 121.75576 * 0.28183 * 5 4 3 21 21 C 1.32331 * 120.81913 * 359.44165 * 20 5 4 22 22 H 1.09004 * 109.47340 * 90.00200 * 1 2 3 23 23 H 1.08996 * 109.47720 * 210.00417 * 1 2 3 24 24 H 1.09006 * 109.47416 * 330.00609 * 1 2 3 25 25 H 1.07996 * 120.45145 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.47162 * 330.00353 * 6 5 4 27 27 H 1.08999 * 109.46993 * 210.00490 * 6 5 4 28 28 H 1.08994 * 113.75787 * 108.09572 * 8 7 6 29 29 H 1.09003 * 113.75723 * 336.73815 * 8 7 6 30 30 H 0.96707 * 114.00278 * 174.15409 * 10 9 8 31 31 H 0.96998 * 120.00288 * 354.87234 * 14 13 11 32 32 H 1.09008 * 113.75708 * 23.23197 * 19 7 6 33 33 H 1.09000 * 113.82289 * 251.80905 * 19 7 6 34 34 H 1.07997 * 120.44875 * 180.25196 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2166 1.1904 0.0000 4 7 3.5395 1.1512 0.0005 5 6 4.1808 -0.0002 0.0015 6 6 5.6878 -0.0002 0.0027 7 7 6.1764 0.0004 1.3880 8 6 7.6357 -0.2395 1.4358 9 6 7.3396 -1.1721 2.6240 10 8 7.3840 -0.5178 3.8936 11 6 8.1267 -2.4569 2.5976 12 1 9.0034 -2.5403 1.9724 13 6 7.7277 -3.5259 3.3715 14 7 8.5481 -4.5337 3.5739 15 14 6.0218 -3.5429 4.1325 16 1 5.8403 -4.7932 4.9129 17 1 5.8698 -2.3717 5.0328 18 1 4.9995 -3.4769 3.0575 19 6 5.9198 -1.3034 2.0440 20 7 3.5393 -1.1514 -0.0034 21 6 2.2166 -1.1906 0.0014 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8901 0.5138 25 1 1.6972 2.1373 -0.0004 26 1 6.0516 0.8896 -0.5112 27 1 6.0515 -0.8903 -0.5105 28 1 8.2171 0.6425 1.7039 29 1 8.0247 -0.7561 0.5583 30 1 7.1119 -1.0771 4.6341 31 1 9.4046 -4.5607 3.1194 32 1 5.8058 -2.1319 1.3448 33 1 5.1328 -1.2698 2.7974 34 1 1.6971 -2.1374 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473415192.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:50 Heat of formation + Delta-G solvation = 12.967527 kcal Electronic energy + Delta-G solvation = -18163.589932 eV Core-core repulsion = 15289.901893 eV Total energy + Delta-G solvation = -2873.688038 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.17576 -40.90760 -36.66966 -34.89387 -34.71706 -34.65562 -31.44901 -28.68730 -27.22763 -26.75308 -25.61264 -24.11282 -22.49549 -20.93856 -19.92892 -18.77355 -17.88231 -17.47089 -16.93836 -16.64786 -15.67108 -15.51579 -15.27291 -15.24566 -14.84820 -14.48901 -14.28639 -13.91837 -13.62980 -13.37263 -13.16211 -12.85648 -12.70246 -12.38445 -12.16764 -11.89226 -11.74076 -11.64983 -11.24133 -10.93688 -10.38327 -10.18956 -10.09846 -9.80624 -8.83820 -6.59403 -0.15656 0.15387 1.32675 1.44026 1.61282 2.33131 2.55618 2.86618 2.91144 3.05160 3.22320 3.68475 3.70269 3.86654 3.93210 3.95455 4.03012 4.14596 4.33510 4.48668 4.56806 4.64627 4.74876 4.79273 4.84760 5.06825 5.14858 5.16075 5.22443 5.49323 5.66294 5.87587 5.99851 6.04559 6.39091 6.97517 7.11903 7.23673 8.49239 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028149 B = 0.006762 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.472374 B = 4139.844294 C = 4672.533663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.183 4.183 3 C 0.132 3.868 4 N -0.523 5.523 5 C 0.303 3.697 6 C 0.086 3.914 7 N -0.469 5.469 8 C 0.034 3.966 9 C 0.188 3.812 10 O -0.570 6.570 11 C -0.622 4.622 12 H 0.032 0.968 13 C -0.006 4.006 14 N -0.922 5.922 15 Si 1.077 2.923 16 H -0.283 1.283 17 H -0.252 1.252 18 H -0.257 1.257 19 C -0.010 4.010 20 N -0.537 5.537 21 C 0.127 3.873 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.200 0.800 26 H 0.109 0.891 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.367 0.633 31 H 0.258 0.742 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.478 8.846 -7.873 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.187 4.187 3 C -0.033 4.033 4 N -0.237 5.237 5 C 0.035 3.965 6 C -0.044 4.044 7 N -0.193 5.193 8 C -0.094 4.094 9 C 0.148 3.852 10 O -0.378 6.378 11 C -0.660 4.660 12 H 0.050 0.950 13 C -0.207 4.207 14 N -0.557 5.557 15 Si 0.898 3.102 16 H -0.208 1.208 17 H -0.177 1.177 18 H -0.182 1.182 19 C -0.140 4.140 20 N -0.251 5.251 21 C -0.038 4.038 22 H 0.110 0.890 23 H 0.102 0.898 24 H 0.106 0.894 25 H 0.217 0.783 26 H 0.127 0.873 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.216 0.784 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -18.506 9.100 -7.019 21.784 hybrid contribution 1.014 -0.707 -1.227 1.742 sum -17.492 8.393 -8.246 21.081 Atomic orbital electron populations 1.20739 0.85869 1.04855 1.04121 1.22128 1.01156 0.94459 1.00936 1.23836 0.88711 1.00184 0.90615 1.68209 1.11630 1.30222 1.13632 1.22752 0.97210 0.84020 0.92498 1.21357 0.87169 1.03148 0.92690 1.68630 1.07276 1.30488 1.12864 1.23893 0.89661 0.98814 0.97070 1.20429 0.91425 0.90723 0.82671 1.86340 1.90742 1.43692 1.17039 1.22464 1.13687 0.98965 1.30869 0.94978 1.27109 1.06295 0.92252 0.95044 1.70941 1.09998 1.35406 1.39318 0.83700 0.71801 0.77331 0.77329 1.20848 1.17739 1.18176 1.24748 0.99289 0.91117 0.98817 1.68237 1.11961 1.30843 1.14101 1.23762 0.88715 1.00322 0.90978 0.89030 0.89821 0.89377 0.78318 0.87300 0.92005 0.89214 0.90137 0.78352 0.93263 0.91064 0.91975 0.79106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.06 71.23 0.72 -0.16 16 2 C -0.18 -3.41 5.91 -19.69 -0.12 -3.52 16 3 C 0.13 2.89 11.01 84.70 0.93 3.82 16 4 N -0.52 -16.13 10.34 -187.84 -1.94 -18.07 16 5 C 0.30 10.37 6.75 138.75 0.94 11.31 16 6 C 0.09 3.06 5.26 85.56 0.45 3.51 16 7 N -0.47 -19.42 6.25 -914.74 -5.72 -25.14 16 8 C 0.03 1.46 7.37 86.41 0.64 2.10 16 9 C 0.19 9.31 1.07 -10.90 -0.01 9.29 16 10 O -0.57 -28.31 13.47 -148.98 -2.01 -30.31 16 11 C -0.62 -35.45 9.04 25.60 0.23 -35.21 16 12 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 13 C -0.01 -0.35 5.44 84.65 0.46 0.11 16 14 N -0.92 -56.58 13.70 21.45 0.29 -56.29 16 15 Si 1.08 49.16 24.55 68.60 1.68 50.84 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.25 -10.25 5.81 99.48 0.58 -9.68 16 18 H -0.26 -11.06 6.48 99.48 0.64 -10.41 16 19 C -0.01 -0.47 4.06 86.36 0.35 -0.12 16 20 N -0.54 -17.73 10.09 -187.84 -1.90 -19.63 16 21 C 0.13 3.04 11.01 84.71 0.93 3.98 16 22 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 23 H 0.08 0.61 8.10 -2.39 -0.02 0.59 16 24 H 0.09 0.55 8.10 -2.38 -0.02 0.53 16 25 H 0.20 2.69 8.06 -2.91 -0.02 2.67 16 26 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 27 H 0.06 2.22 7.70 -2.39 -0.02 2.20 16 28 H 0.09 3.70 8.14 -2.39 -0.02 3.68 16 29 H 0.08 3.31 7.74 -2.39 -0.02 3.30 16 30 H 0.37 16.99 6.07 -74.05 -0.45 16.54 16 31 H 0.26 16.03 8.73 -92.71 -0.81 15.22 16 32 H 0.07 3.35 7.62 -2.38 -0.02 3.33 16 33 H 0.06 2.80 6.86 -2.39 -0.02 2.78 16 34 H 0.19 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -72.08 284.28 -3.63 -75.71 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.43 Total: 27.78 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 5.52 Total: -4.89 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -9.26 Total: -119.13 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -2.01 Total: -30.31 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 1.68 Total: 50.84 kcal Total: -72.08 -3.63 -75.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473415192.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.678 kcal (2) G-P(sol) polarization free energy of solvation -72.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds