Wall clock time and date at job start Thu Apr 9 2020 12:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34123 * 125.99397 * 2 1 4 4 C 1.30497 * 109.25798 * 180.25005 * 3 2 1 5 5 N 1.35044 * 108.69838 * 359.75804 * 4 3 2 6 6 H 0.96999 * 126.39384 * 180.02562 * 5 4 3 7 7 C 1.34667 * 125.98507 * 179.82849 * 2 1 3 8 8 C 1.50700 * 126.59364 * 0.02562 * 7 2 1 9 9 C 1.50703 * 109.47066 * 84.71538 * 8 7 2 10 10 O 1.21288 * 119.99923 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99732 * 180.02562 * 9 8 7 12 12 C 1.37103 * 119.99736 * 179.97438 * 11 9 8 13 13 H 1.07995 * 119.99753 * 224.47360 * 12 11 9 14 14 C 1.38953 * 119.99760 * 44.47112 * 12 11 9 15 15 N 1.31411 * 120.00119 * 18.01397 * 14 12 11 16 16 Si 1.86796 * 119.99586 * 198.00617 * 14 12 11 17 17 H 1.48503 * 109.47440 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46879 * 120.00477 * 16 14 12 19 19 H 1.48497 * 109.47509 * 240.00152 * 16 14 12 20 20 C 1.46493 * 120.00300 * 359.97438 * 11 9 8 21 21 C 1.52996 * 117.50029 * 183.20713 * 20 11 9 22 22 C 1.53005 * 117.49765 * 114.54821 * 20 11 9 23 23 H 1.08999 * 109.46715 * 270.17207 * 1 2 3 24 24 H 1.09003 * 109.46636 * 30.17118 * 1 2 3 25 25 H 1.09000 * 109.47210 * 150.17442 * 1 2 3 26 26 H 1.07993 * 125.65334 * 179.73920 * 4 3 2 27 27 H 1.08998 * 109.47303 * 324.71317 * 8 7 2 28 28 H 1.09005 * 109.47290 * 204.71174 * 8 7 2 29 29 H 0.96994 * 119.99786 * 174.95982 * 15 14 12 30 30 H 1.08998 * 115.55399 * 328.87715 * 20 11 9 31 31 H 1.09004 * 117.50325 * 0.02562 * 21 20 11 32 32 H 1.09002 * 117.50404 * 145.02120 * 21 20 11 33 33 H 1.09003 * 117.49337 * 214.97712 * 22 20 11 34 34 H 1.08997 * 117.49839 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2953 1.0852 0.0000 4 6 3.5450 0.7094 -0.0054 5 7 3.5912 -0.6403 -0.0036 6 1 4.3913 -1.1887 -0.0062 7 6 2.2983 -1.0897 0.0033 8 6 1.8471 -2.5275 0.0070 9 6 1.5724 -2.9715 -1.4067 10 8 1.7272 -2.1964 -2.3266 11 7 1.1536 -4.2296 -1.6485 12 6 0.9032 -4.6333 -2.9346 13 1 0.0130 -5.2024 -3.1582 14 6 1.7947 -4.3101 -3.9503 15 7 3.0215 -3.9428 -3.6555 16 14 1.2492 -4.3980 -5.7347 17 1 -0.1688 -4.8348 -5.7979 18 1 1.3822 -3.0574 -6.3595 19 1 2.1003 -5.3712 -6.4652 20 6 0.9661 -5.1655 -0.5373 21 6 0.5617 -6.6001 -0.8826 22 6 -0.4578 -5.6479 -0.2526 23 1 -0.3633 0.0031 1.0277 24 1 -0.3633 0.8885 -0.5165 25 1 -0.3633 -0.8915 -0.5111 26 1 4.4005 1.3685 -0.0107 27 1 0.9378 -2.6215 0.6006 28 1 2.6289 -3.1526 0.4386 29 1 3.6649 -3.7880 -4.3646 30 1 1.6285 -5.0210 0.3161 31 1 0.4357 -6.8478 -1.9366 32 1 0.9579 -7.3994 -0.2562 33 1 -0.7318 -5.8210 0.7881 34 1 -1.2549 -5.2685 -0.8919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544033350.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:52 Heat of formation + Delta-G solvation = 58.009036 kcal Electronic energy + Delta-G solvation = -18533.101444 eV Core-core repulsion = 15661.366552 eV Total energy + Delta-G solvation = -2871.734892 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.58267 -38.51666 -36.07942 -32.97402 -32.60408 -31.89368 -30.82179 -28.35595 -25.77859 -24.34953 -21.75817 -21.36072 -21.10280 -19.74222 -18.85740 -17.15343 -16.48344 -16.06734 -14.90249 -14.58744 -14.48150 -14.14422 -13.79560 -13.27566 -12.80782 -12.63133 -12.34360 -12.29514 -11.79903 -11.65932 -11.48790 -11.10719 -10.93005 -10.88518 -10.52539 -10.17764 -10.00584 -9.77456 -9.50007 -9.36394 -8.74474 -8.08776 -7.61942 -7.04111 -6.14683 -3.89299 2.54168 3.27519 3.37956 3.40190 3.57335 3.63114 4.09789 4.26102 4.73716 4.84848 5.00116 5.25694 5.37469 5.51798 5.60191 5.67155 5.73887 5.79365 5.86736 6.00306 6.12267 6.14827 6.20146 6.41484 6.45511 6.48930 6.71396 6.76780 6.90292 7.27364 7.59964 7.85841 8.25203 8.54200 9.03981 9.14776 9.64049 10.27740 10.94712 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.008564 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.078406 B = 3268.558444 C = 4029.500508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.002 3.998 3 N -0.495 5.495 4 C 0.170 3.830 5 N -0.561 5.561 6 H 0.416 0.584 7 C 0.025 3.975 8 C -0.065 4.065 9 C 0.485 3.515 10 O -0.519 6.519 11 N -0.430 5.430 12 C -0.346 4.346 13 H 0.078 0.922 14 C 0.074 3.926 15 N -0.837 5.837 16 Si 0.911 3.089 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.286 1.286 20 C 0.073 3.927 21 C -0.174 4.174 22 C -0.207 4.207 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.201 0.799 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.262 0.738 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 0.046 9.415 9.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.126 4.126 3 N -0.216 5.216 4 C -0.113 4.113 5 N -0.163 5.163 6 H 0.253 0.747 7 C -0.091 4.091 8 C -0.107 4.107 9 C 0.271 3.729 10 O -0.395 6.395 11 N -0.152 5.152 12 C -0.473 4.473 13 H 0.095 0.905 14 C -0.136 4.136 15 N -0.470 5.470 16 Si 0.738 3.262 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.212 1.212 20 C -0.033 4.033 21 C -0.212 4.212 22 C -0.246 4.246 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.218 0.782 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.383 1.445 8.833 8.958 hybrid contribution 0.828 -1.263 -0.897 1.756 sum 0.445 0.182 7.936 7.951 Atomic orbital electron populations 1.19960 0.88202 1.02797 1.01040 1.20281 0.96167 0.87828 1.08311 1.70052 1.00578 1.30956 1.19991 1.24637 0.97160 0.82069 1.07467 1.43079 1.08200 1.08468 1.56575 0.74661 1.20456 0.83612 0.96106 1.08941 1.20166 1.01870 0.89508 0.99133 1.19600 0.82474 0.82316 0.88500 1.90575 1.51484 1.52148 1.45272 1.42761 1.61633 1.06620 1.04177 1.18878 1.06729 1.39565 0.82089 0.90476 1.25228 0.94078 0.94740 0.99595 1.69814 1.02791 1.41217 1.33199 0.86167 0.78760 0.77690 0.83540 1.19505 1.20678 1.21235 1.21701 0.95697 0.92496 0.93390 1.23069 1.03148 0.92525 1.02430 1.23334 0.94773 1.06095 1.00423 0.92243 0.91680 0.91196 0.78219 0.88430 0.90265 0.92795 0.88167 0.87494 0.89846 0.89753 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.14 36.01 0.37 -0.70 16 2 C 0.00 0.05 7.09 -82.85 -0.59 -0.54 16 3 N -0.50 -9.62 11.25 -10.88 -0.12 -9.74 16 4 C 0.17 2.75 13.04 -90.38 -1.18 1.57 16 5 N -0.56 -9.30 6.15 -10.30 -0.06 -9.36 16 6 H 0.42 5.74 8.96 -40.82 -0.37 5.37 16 7 C 0.03 0.48 5.73 -81.60 -0.47 0.02 16 8 C -0.06 -1.21 4.43 -29.03 -0.13 -1.34 16 9 C 0.48 11.89 6.96 -10.98 -0.08 11.81 16 10 O -0.52 -15.13 13.81 5.55 0.08 -15.05 16 11 N -0.43 -10.40 2.83 -107.73 -0.31 -10.71 16 12 C -0.35 -9.28 7.91 -14.93 -0.12 -9.40 16 13 H 0.08 2.02 7.26 -52.49 -0.38 1.63 16 14 C 0.07 2.06 4.39 -17.47 -0.08 1.98 16 15 N -0.84 -24.47 11.75 55.50 0.65 -23.82 16 16 Si 0.91 21.99 29.59 -169.99 -5.03 16.96 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.07 1.40 5.87 -67.93 -0.40 1.00 16 21 C -0.17 -3.02 9.80 -26.70 -0.26 -3.28 16 22 C -0.21 -3.37 10.36 -26.69 -0.28 -3.65 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.07 1.26 7.89 -51.93 -0.41 0.85 16 26 H 0.20 2.27 8.06 -52.49 -0.42 1.85 16 27 H 0.10 1.59 8.01 -51.93 -0.42 1.18 16 28 H 0.08 1.32 7.57 -51.93 -0.39 0.93 16 29 H 0.26 7.39 8.32 -40.82 -0.34 7.05 16 30 H 0.10 1.67 6.96 -51.93 -0.36 1.31 16 31 H 0.11 2.08 6.73 -51.93 -0.35 1.73 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 292.89 15.07 4.41 4.41 Total: -1.00 -35.06 292.89 -7.93 -42.99 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.35 Total: 6.84 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -3.21 Total: -2.52 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.16 Total: -53.63 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.08 Total: -15.05 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -35.06 -7.93 -42.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544033350.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.000 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds