Wall clock time and date at job start Thu Apr 9 2020 12:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34123 * 125.99397 * 2 1 4 4 C 1.30497 * 109.25798 * 180.25005 * 3 2 1 5 5 N 1.35044 * 108.69838 * 359.75804 * 4 3 2 6 6 H 0.96999 * 126.39384 * 180.02562 * 5 4 3 7 7 C 1.34667 * 125.98507 * 179.82849 * 2 1 3 8 8 C 1.50700 * 126.59364 * 0.02562 * 7 2 1 9 9 C 1.50703 * 109.47066 * 84.71538 * 8 7 2 10 10 O 1.21288 * 119.99923 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99732 * 180.02562 * 9 8 7 12 12 C 1.37103 * 119.99736 * 179.97438 * 11 9 8 13 13 H 1.07995 * 119.99753 * 224.47360 * 12 11 9 14 14 C 1.38953 * 119.99760 * 44.47112 * 12 11 9 15 15 N 1.31411 * 120.00119 * 18.01397 * 14 12 11 16 16 Si 1.86796 * 119.99586 * 198.00617 * 14 12 11 17 17 H 1.48503 * 109.47440 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46879 * 120.00477 * 16 14 12 19 19 H 1.48497 * 109.47509 * 240.00152 * 16 14 12 20 20 C 1.46493 * 120.00300 * 359.97438 * 11 9 8 21 21 C 1.52996 * 117.50029 * 183.20713 * 20 11 9 22 22 C 1.53005 * 117.49765 * 114.54821 * 20 11 9 23 23 H 1.08999 * 109.46715 * 270.17207 * 1 2 3 24 24 H 1.09003 * 109.46636 * 30.17118 * 1 2 3 25 25 H 1.09000 * 109.47210 * 150.17442 * 1 2 3 26 26 H 1.07993 * 125.65334 * 179.73920 * 4 3 2 27 27 H 1.08998 * 109.47303 * 324.71317 * 8 7 2 28 28 H 1.09005 * 109.47290 * 204.71174 * 8 7 2 29 29 H 0.96994 * 119.99786 * 174.95982 * 15 14 12 30 30 H 1.08998 * 115.55399 * 328.87715 * 20 11 9 31 31 H 1.09004 * 117.50325 * 0.02562 * 21 20 11 32 32 H 1.09002 * 117.50404 * 145.02120 * 21 20 11 33 33 H 1.09003 * 117.49337 * 214.97712 * 22 20 11 34 34 H 1.08997 * 117.49839 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2953 1.0852 0.0000 4 6 3.5450 0.7094 -0.0054 5 7 3.5912 -0.6403 -0.0036 6 1 4.3913 -1.1887 -0.0062 7 6 2.2983 -1.0897 0.0033 8 6 1.8471 -2.5275 0.0070 9 6 1.5724 -2.9715 -1.4067 10 8 1.7272 -2.1964 -2.3266 11 7 1.1536 -4.2296 -1.6485 12 6 0.9032 -4.6333 -2.9346 13 1 0.0130 -5.2024 -3.1582 14 6 1.7947 -4.3101 -3.9503 15 7 3.0215 -3.9428 -3.6555 16 14 1.2492 -4.3980 -5.7347 17 1 -0.1688 -4.8348 -5.7979 18 1 1.3822 -3.0574 -6.3595 19 1 2.1003 -5.3712 -6.4652 20 6 0.9661 -5.1655 -0.5373 21 6 0.5617 -6.6001 -0.8826 22 6 -0.4578 -5.6479 -0.2526 23 1 -0.3633 0.0031 1.0277 24 1 -0.3633 0.8885 -0.5165 25 1 -0.3633 -0.8915 -0.5111 26 1 4.4005 1.3685 -0.0107 27 1 0.9378 -2.6215 0.6006 28 1 2.6289 -3.1526 0.4386 29 1 3.6649 -3.7880 -4.3646 30 1 1.6285 -5.0210 0.3161 31 1 0.4357 -6.8478 -1.9366 32 1 0.9579 -7.3994 -0.2562 33 1 -0.7318 -5.8210 0.7881 34 1 -1.2549 -5.2685 -0.8919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544033350.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:52 Heat of formation + Delta-G solvation = 35.100937 kcal Electronic energy + Delta-G solvation = -18534.094813 eV Core-core repulsion = 15661.366552 eV Total energy + Delta-G solvation = -2872.728262 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.92809 -40.26224 -37.71231 -34.85744 -33.94842 -33.47683 -32.63603 -29.84505 -27.40469 -26.05026 -23.15380 -22.82862 -22.53505 -21.42256 -20.33232 -18.58867 -18.20604 -17.76902 -16.78709 -16.10242 -15.92719 -15.84296 -15.32913 -14.82875 -14.42335 -14.19985 -13.75221 -13.59280 -13.51430 -13.21093 -12.99382 -12.93724 -12.75270 -12.50183 -12.17927 -12.07822 -11.63013 -11.18226 -10.89489 -10.77068 -10.68577 -9.95415 -9.05741 -8.91588 -8.21195 -5.97190 1.16730 1.32845 1.41082 1.47539 2.19810 2.27581 2.36006 2.46296 3.12931 3.19309 3.39226 3.75948 4.01149 4.14907 4.16338 4.28332 4.34850 4.47252 4.50345 4.58513 4.65389 4.88222 4.94970 5.07990 5.10873 5.12616 5.33027 5.38421 5.48702 5.53108 5.90198 6.21391 6.64758 7.05283 7.19343 7.24497 7.73157 8.40500 8.87322 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.008564 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.078406 B = 3268.558444 C = 4029.500508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.020 4.020 3 N -0.532 5.532 4 C 0.184 3.816 5 N -0.558 5.558 6 H 0.428 0.572 7 C 0.001 3.999 8 C -0.048 4.048 9 C 0.474 3.526 10 O -0.578 6.578 11 N -0.446 5.446 12 C -0.350 4.350 13 H 0.076 0.924 14 C 0.024 3.976 15 N -0.871 5.871 16 Si 0.962 3.038 17 H -0.258 1.258 18 H -0.300 1.300 19 H -0.273 1.273 20 C 0.045 3.955 21 C -0.174 4.174 22 C -0.180 4.180 23 H 0.087 0.913 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.246 0.754 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.256 0.744 30 H 0.130 0.870 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.450 -0.690 11.294 11.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.148 4.148 3 N -0.253 5.253 4 C -0.100 4.100 5 N -0.161 5.161 6 H 0.267 0.733 7 C -0.116 4.116 8 C -0.089 4.089 9 C 0.262 3.738 10 O -0.458 6.458 11 N -0.167 5.167 12 C -0.478 4.478 13 H 0.093 0.907 14 C -0.182 4.182 15 N -0.506 5.506 16 Si 0.788 3.212 17 H -0.182 1.182 18 H -0.227 1.227 19 H -0.198 1.198 20 C -0.060 4.060 21 C -0.211 4.211 22 C -0.219 4.219 23 H 0.106 0.894 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.262 0.738 27 H 0.141 0.859 28 H 0.120 0.880 29 H 0.065 0.935 30 H 0.147 0.853 31 H 0.097 0.903 32 H 0.135 0.865 33 H 0.144 0.856 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.536 0.639 10.741 10.773 hybrid contribution 0.834 -1.023 -1.425 1.943 sum 0.298 -0.384 9.316 9.328 Atomic orbital electron populations 1.19962 0.87347 1.01791 1.02549 1.20728 0.97281 0.88357 1.08450 1.70057 1.01952 1.31409 1.21927 1.25568 0.97619 0.82391 1.04410 1.43123 1.08037 1.08884 1.56071 0.73260 1.20549 0.84623 0.96147 1.10243 1.20007 1.03758 0.89670 0.95456 1.20527 0.81100 0.81855 0.90313 1.90531 1.53879 1.53750 1.47641 1.42985 1.61259 1.07742 1.04690 1.19078 1.06291 1.38509 0.83932 0.90673 1.25953 0.94256 0.95012 1.03005 1.69908 1.03637 1.43466 1.33601 0.85365 0.79259 0.76762 0.79780 1.18175 1.22706 1.19813 1.22051 0.98567 0.92576 0.92818 1.23121 1.03641 0.92691 1.01689 1.23347 0.92574 1.03680 1.02268 0.89413 0.92098 0.92672 0.73799 0.85924 0.88019 0.93466 0.85278 0.90322 0.86496 0.85553 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.99 10.14 71.24 0.72 -1.26 16 2 C -0.02 -0.78 7.09 41.39 0.29 -0.49 16 3 N -0.53 -20.15 11.25 -188.32 -2.12 -22.27 16 4 C 0.18 5.60 13.04 180.26 2.35 7.95 16 5 N -0.56 -17.65 6.15 -186.50 -1.15 -18.80 16 6 H 0.43 11.10 8.96 -92.71 -0.83 10.27 16 7 C 0.00 0.03 5.73 40.95 0.23 0.27 16 8 C -0.05 -1.71 4.43 29.10 0.13 -1.58 16 9 C 0.47 23.21 6.96 87.66 0.61 23.82 16 10 O -0.58 -34.51 13.81 -3.05 -0.04 -34.55 16 11 N -0.45 -21.41 2.83 -613.14 -1.74 -23.14 16 12 C -0.35 -19.01 7.91 84.04 0.67 -18.35 16 13 H 0.08 3.98 7.26 -2.91 -0.02 3.96 16 14 C 0.02 1.34 4.39 84.93 0.37 1.72 16 15 N -0.87 -52.17 11.75 21.66 0.25 -51.91 16 16 Si 0.96 46.09 29.59 68.60 2.03 48.12 16 17 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 C 0.04 1.60 5.87 44.99 0.26 1.86 16 21 C -0.17 -5.61 9.80 30.62 0.30 -5.31 16 22 C -0.18 -5.29 10.36 30.62 0.32 -4.97 16 23 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.05 1.99 7.89 -2.39 -0.02 1.97 16 26 H 0.25 4.75 8.06 -2.91 -0.02 4.73 16 27 H 0.12 3.70 8.01 -2.39 -0.02 3.68 16 28 H 0.10 3.14 7.57 -2.38 -0.02 3.12 16 29 H 0.26 14.91 8.32 -92.71 -0.77 14.14 16 30 H 0.13 3.83 6.96 -2.39 -0.02 3.81 16 31 H 0.08 3.00 6.73 -2.38 -0.02 2.99 16 32 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 33 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -78.57 292.89 3.79 -74.78 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.29 Total: 24.11 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 6.26 Total: 3.66 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -4.75 Total: -116.12 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.04 Total: -34.55 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -78.57 3.79 -74.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544033350.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.885 kcal (2) G-P(sol) polarization free energy of solvation -78.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds