Wall clock time and date at job start Thu Apr 9 2020 12:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47445 * 2 1 4 4 N 1.32148 * 120.54382 * 275.21659 * 3 2 1 5 5 C 1.31870 * 120.97364 * 180.30967 * 4 3 2 6 6 C 1.50695 * 118.94194 * 179.70459 * 5 4 3 7 7 N 1.31893 * 122.11134 * 359.67452 * 5 4 3 8 8 C 1.32122 * 120.97364 * 0.02823 * 7 5 4 9 9 C 1.39994 * 120.54144 * 94.95081 * 3 2 1 10 10 C 1.47724 * 120.94468 * 0.02562 * 9 3 2 11 11 O 1.21584 * 119.99692 * 54.57479 * 10 9 3 12 12 N 1.34780 * 119.99785 * 234.57135 * 10 9 3 13 13 C 1.46495 * 120.00225 * 5.60840 * 12 10 9 14 14 C 1.36878 * 119.99557 * 185.60191 * 12 10 9 15 15 H 1.08005 * 119.99988 * 5.21735 * 14 12 10 16 16 C 1.39044 * 119.99706 * 185.20926 * 14 12 10 17 17 N 1.31362 * 120.00556 * 5.21180 * 16 14 12 18 18 Si 1.86802 * 119.99842 * 185.21448 * 16 14 12 19 19 H 1.48506 * 109.47115 * 60.00044 * 18 16 14 20 20 H 1.48499 * 109.47320 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47290 * 300.00226 * 18 16 14 22 22 H 1.09000 * 109.46827 * 59.99989 * 1 2 3 23 23 H 1.09001 * 109.46971 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46837 * 300.00257 * 1 2 3 25 25 H 1.09010 * 109.47218 * 240.00099 * 2 1 3 26 26 H 1.09003 * 109.47134 * 120.00713 * 2 1 3 27 27 H 1.09005 * 109.47274 * 269.97664 * 6 5 4 28 28 H 1.09004 * 109.47714 * 29.97321 * 6 5 4 29 29 H 1.08997 * 109.47126 * 149.97613 * 6 5 4 30 30 H 1.07998 * 120.54209 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47220 * 355.09364 * 13 12 10 32 32 H 1.09001 * 109.46928 * 115.09198 * 13 12 10 33 33 H 1.08992 * 109.46999 * 235.09517 * 13 12 10 34 34 H 0.96993 * 120.00375 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1587 2.0884 -1.1334 5 6 2.6033 3.3299 -1.1438 6 6 2.7357 4.0460 -2.4631 7 7 2.9351 3.9651 -0.0366 8 6 2.8348 3.3756 1.1416 9 6 2.3677 2.0568 1.2012 10 6 2.2387 1.3544 2.4944 11 8 2.7893 0.2834 2.6620 12 7 1.5108 1.9009 3.4884 13 6 0.7477 3.1281 3.2481 14 6 1.4844 1.3090 4.7223 15 1 2.1117 0.4534 4.9243 16 6 0.6501 1.8095 5.7157 17 7 -0.1869 2.7841 5.4412 18 14 0.7194 1.0960 7.4407 19 1 2.0853 1.2746 7.9957 20 1 -0.2618 1.7980 8.3065 21 1 0.3905 -0.3512 7.3914 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5139 -0.8901 26 1 1.8934 -0.5140 0.8899 27 1 3.7312 3.8733 -2.8720 28 1 1.9866 3.6677 -3.1588 29 1 2.5850 5.1150 -2.3130 30 1 3.1088 3.9021 2.0438 31 1 0.9586 3.4964 2.2441 32 1 -0.3177 2.9177 3.3417 33 1 1.0346 3.8833 3.9798 34 1 -0.7691 3.1329 6.1341 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544608544.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:54 Heat of formation + Delta-G solvation = 18.858382 kcal Electronic energy + Delta-G solvation = -18428.955307 eV Core-core repulsion = 15555.522715 eV Total energy + Delta-G solvation = -2873.432592 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89393 -38.31746 -35.24705 -34.44251 -33.18127 -31.68615 -30.97948 -28.60421 -26.46235 -24.86172 -24.59039 -22.99858 -21.28339 -19.61834 -17.53122 -17.14066 -16.33437 -15.82206 -14.97758 -14.84391 -14.18952 -14.04170 -13.62346 -13.51278 -13.04107 -12.84991 -12.66346 -12.33491 -12.10639 -11.82905 -11.70079 -11.25657 -11.10790 -11.06327 -10.97287 -10.65939 -10.51265 -10.39087 -10.11341 -9.22191 -8.92156 -8.84993 -8.49779 -8.04248 -6.42642 -3.96217 1.06487 1.39523 3.08539 3.15794 3.19399 3.62832 3.93584 4.08503 4.15978 4.37449 4.69468 4.80985 5.00723 5.30924 5.44973 5.55697 5.58078 5.61501 5.64400 5.68365 5.85036 6.01231 6.12269 6.21471 6.26361 6.47368 6.56412 6.76445 6.91057 7.23699 7.30649 7.39541 7.87654 8.29818 8.39188 8.99736 9.22859 9.78120 10.50567 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.031494 B = 0.006677 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.832310 B = 4192.609952 C = 4571.440164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 C 0.210 3.790 4 N -0.521 5.521 5 C 0.303 3.697 6 C -0.079 4.079 7 N -0.526 5.526 8 C 0.170 3.830 9 C -0.192 4.192 10 C 0.473 3.527 11 O -0.587 6.587 12 N -0.425 5.425 13 C 0.109 3.891 14 C -0.299 4.299 15 H 0.109 0.891 16 C 0.029 3.971 17 N -0.878 5.878 18 Si 0.937 3.063 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.271 1.271 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.169 0.831 31 H 0.022 0.978 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 2.246 -8.963 9.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 C 0.063 3.937 4 N -0.236 5.236 5 C 0.036 3.964 6 C -0.138 4.138 7 N -0.241 5.241 8 C 0.004 3.996 9 C -0.200 4.200 10 C 0.261 3.739 11 O -0.474 6.474 12 N -0.140 5.140 13 C -0.035 4.035 14 C -0.426 4.426 15 H 0.127 0.873 16 C -0.175 4.175 17 N -0.518 5.518 18 Si 0.763 3.237 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.196 1.196 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.128 0.872 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.186 0.814 31 H 0.040 0.960 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.729 2.348 -9.596 9.906 hybrid contribution -0.187 -0.419 1.742 1.802 sum 0.542 1.929 -7.854 8.106 Atomic orbital electron populations 1.21630 0.93874 1.02139 1.02012 1.20750 0.96711 0.89831 1.05226 1.21754 0.88973 0.96299 0.86664 1.68034 1.16360 1.09113 1.30114 1.23194 0.90718 0.87703 0.94755 1.20488 1.03309 0.99772 0.90208 1.68173 1.18553 1.38628 0.98735 1.23421 0.89951 0.90484 0.95787 1.21865 1.03761 0.96766 0.97564 1.17256 0.86832 0.87023 0.82824 1.90592 1.52859 1.22499 1.81406 1.43685 1.38950 1.22023 1.09337 1.21942 0.98095 0.87072 0.96365 1.19853 1.22846 1.14055 0.85872 0.87337 1.25423 0.95006 0.96287 1.00746 1.70113 1.21782 1.25780 1.34121 0.85823 0.78319 0.79111 0.80489 1.19649 1.20740 1.19589 0.92772 0.91814 0.92325 0.90147 0.87185 0.90041 0.89962 0.89896 0.81372 0.96005 0.90316 0.91270 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.89 37.16 0.37 -1.83 16 2 C -0.09 -1.54 6.00 -27.88 -0.17 -1.71 16 3 C 0.21 4.06 6.12 -81.80 -0.50 3.56 16 4 N -0.52 -9.35 10.25 -6.66 -0.07 -9.42 16 5 C 0.30 5.04 7.64 -157.05 -1.20 3.84 16 6 C -0.08 -0.92 10.31 36.00 0.37 -0.55 16 7 N -0.53 -9.33 10.31 -10.37 -0.11 -9.44 16 8 C 0.17 3.20 8.89 -16.75 -0.15 3.05 16 9 C -0.19 -3.99 4.69 -104.69 -0.49 -4.48 16 10 C 0.47 11.47 6.53 -12.38 -0.08 11.39 16 11 O -0.59 -15.81 14.84 5.29 0.08 -15.73 16 12 N -0.42 -10.60 3.02 -123.33 -0.37 -10.97 16 13 C 0.11 2.44 8.34 59.84 0.50 2.94 16 14 C -0.30 -7.95 9.55 -15.00 -0.14 -8.09 16 15 H 0.11 3.01 7.20 -52.48 -0.38 2.63 16 16 C 0.03 0.72 5.42 -17.45 -0.09 0.63 16 17 N -0.88 -22.05 9.52 55.50 0.53 -21.52 16 18 Si 0.94 19.84 29.56 -169.99 -5.02 14.81 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 26 H 0.11 2.22 5.73 -51.93 -0.30 1.92 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.17 2.94 7.85 -52.49 -0.41 2.53 16 31 H 0.02 0.44 4.82 -51.93 -0.25 0.19 16 32 H 0.08 1.88 6.89 -51.93 -0.36 1.52 16 33 H 0.07 1.59 7.23 -51.93 -0.38 1.22 16 34 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 LS Contribution 287.22 15.07 4.33 4.33 Total: -1.00 -29.25 287.22 -6.39 -35.64 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.16 Total: 3.55 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -1.59 Total: 8.75 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.02 Total: -51.35 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.08 Total: -15.73 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.25 -6.39 -35.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544608544.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.495 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds