Wall clock time and date at job start Thu Apr 9 2020 12:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47445 * 2 1 4 4 N 1.32148 * 120.54382 * 275.21659 * 3 2 1 5 5 C 1.31870 * 120.97364 * 180.30967 * 4 3 2 6 6 C 1.50695 * 118.94194 * 179.70459 * 5 4 3 7 7 N 1.31893 * 122.11134 * 359.67452 * 5 4 3 8 8 C 1.32122 * 120.97364 * 0.02823 * 7 5 4 9 9 C 1.39994 * 120.54144 * 94.95081 * 3 2 1 10 10 C 1.47724 * 120.94468 * 0.02562 * 9 3 2 11 11 O 1.21584 * 119.99692 * 54.57479 * 10 9 3 12 12 N 1.34780 * 119.99785 * 234.57135 * 10 9 3 13 13 C 1.46495 * 120.00225 * 5.60840 * 12 10 9 14 14 C 1.36878 * 119.99557 * 185.60191 * 12 10 9 15 15 H 1.08005 * 119.99988 * 5.21735 * 14 12 10 16 16 C 1.39044 * 119.99706 * 185.20926 * 14 12 10 17 17 N 1.31362 * 120.00556 * 5.21180 * 16 14 12 18 18 Si 1.86802 * 119.99842 * 185.21448 * 16 14 12 19 19 H 1.48506 * 109.47115 * 60.00044 * 18 16 14 20 20 H 1.48499 * 109.47320 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47290 * 300.00226 * 18 16 14 22 22 H 1.09000 * 109.46827 * 59.99989 * 1 2 3 23 23 H 1.09001 * 109.46971 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46837 * 300.00257 * 1 2 3 25 25 H 1.09010 * 109.47218 * 240.00099 * 2 1 3 26 26 H 1.09003 * 109.47134 * 120.00713 * 2 1 3 27 27 H 1.09005 * 109.47274 * 269.97664 * 6 5 4 28 28 H 1.09004 * 109.47714 * 29.97321 * 6 5 4 29 29 H 1.08997 * 109.47126 * 149.97613 * 6 5 4 30 30 H 1.07998 * 120.54209 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47220 * 355.09364 * 13 12 10 32 32 H 1.09001 * 109.46928 * 115.09198 * 13 12 10 33 33 H 1.08992 * 109.46999 * 235.09517 * 13 12 10 34 34 H 0.96993 * 120.00375 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1587 2.0884 -1.1334 5 6 2.6033 3.3299 -1.1438 6 6 2.7357 4.0460 -2.4631 7 7 2.9351 3.9651 -0.0366 8 6 2.8348 3.3756 1.1416 9 6 2.3677 2.0568 1.2012 10 6 2.2387 1.3544 2.4944 11 8 2.7893 0.2834 2.6620 12 7 1.5108 1.9009 3.4884 13 6 0.7477 3.1281 3.2481 14 6 1.4844 1.3090 4.7223 15 1 2.1117 0.4534 4.9243 16 6 0.6501 1.8095 5.7157 17 7 -0.1869 2.7841 5.4412 18 14 0.7194 1.0960 7.4407 19 1 2.0853 1.2746 7.9957 20 1 -0.2618 1.7980 8.3065 21 1 0.3905 -0.3512 7.3914 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5139 -0.8901 26 1 1.8934 -0.5140 0.8899 27 1 3.7312 3.8733 -2.8720 28 1 1.9866 3.6677 -3.1588 29 1 2.5850 5.1150 -2.3130 30 1 3.1088 3.9021 2.0438 31 1 0.9586 3.4964 2.2441 32 1 -0.3177 2.9177 3.3417 33 1 1.0346 3.8833 3.9798 34 1 -0.7691 3.1329 6.1341 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544608544.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:53 Heat of formation + Delta-G solvation = 0.784569 kcal Electronic energy + Delta-G solvation = -18429.739046 eV Core-core repulsion = 15555.522715 eV Total energy + Delta-G solvation = -2874.216331 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.38128 -40.15130 -37.02018 -36.04236 -34.66943 -33.53542 -32.34391 -29.94376 -28.30646 -26.55487 -26.12849 -24.48724 -22.72694 -21.34269 -19.14475 -18.96911 -18.13711 -17.21349 -16.75767 -16.37959 -15.90106 -15.71889 -15.21399 -14.83300 -14.78690 -14.25376 -13.87389 -13.77682 -13.60161 -13.27201 -13.17368 -12.84147 -12.73862 -12.60057 -12.56906 -12.38178 -12.16134 -12.04102 -11.56086 -11.12226 -10.56436 -10.37327 -10.22829 -9.99098 -8.33959 -5.98462 -0.40544 -0.08987 1.37345 1.41863 1.52446 1.86349 2.20427 2.57072 2.81453 2.93557 2.99474 3.07922 3.33832 3.77154 3.92575 4.16572 4.20329 4.29167 4.43434 4.46061 4.67646 4.75064 4.83153 4.94959 4.97725 5.03228 5.11678 5.21766 5.35167 5.38582 5.42205 5.79320 5.96202 6.35597 6.96492 7.04306 7.31208 7.86201 8.57896 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.031494 B = 0.006677 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.832310 B = 4192.609952 C = 4571.440164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C 0.211 3.789 4 N -0.523 5.523 5 C 0.307 3.693 6 C -0.078 4.078 7 N -0.529 5.529 8 C 0.178 3.822 9 C -0.223 4.223 10 C 0.477 3.523 11 O -0.622 6.622 12 N -0.438 5.438 13 C 0.127 3.873 14 C -0.339 4.339 15 H 0.086 0.914 16 C 0.000 4.000 17 N -0.891 5.891 18 Si 0.998 3.002 19 H -0.269 1.269 20 H -0.268 1.268 21 H -0.272 1.272 22 H 0.069 0.931 23 H 0.085 0.915 24 H 0.030 0.970 25 H 0.104 0.896 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.177 0.823 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 3.154 -10.401 10.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.125 4.125 3 C 0.064 3.936 4 N -0.238 5.238 5 C 0.041 3.959 6 C -0.136 4.136 7 N -0.243 5.243 8 C 0.011 3.989 9 C -0.231 4.231 10 C 0.265 3.735 11 O -0.512 6.512 12 N -0.153 5.153 13 C -0.016 4.016 14 C -0.467 4.467 15 H 0.104 0.896 16 C -0.202 4.202 17 N -0.529 5.529 18 Si 0.821 3.179 19 H -0.194 1.194 20 H -0.193 1.193 21 H -0.197 1.197 22 H 0.088 0.912 23 H 0.104 0.896 24 H 0.049 0.951 25 H 0.123 0.877 26 H 0.098 0.902 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.194 0.806 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.490 3.289 -11.060 11.549 hybrid contribution -0.081 -0.660 2.027 2.133 sum 0.409 2.629 -9.033 9.417 Atomic orbital electron populations 1.21579 0.92477 1.03430 1.01318 1.20749 0.97834 0.89076 1.04831 1.22000 0.88103 0.96904 0.86625 1.68199 1.16995 1.09721 1.28872 1.24314 0.87955 0.87356 0.96270 1.20726 1.05071 1.00166 0.87612 1.68341 1.19050 1.38373 0.98576 1.23544 0.88868 0.89633 0.96832 1.21611 1.07280 0.97930 0.96294 1.17720 0.85501 0.86541 0.83707 1.90547 1.53971 1.24170 1.82465 1.43828 1.39467 1.22747 1.09270 1.21728 0.96631 0.85979 0.97246 1.19815 1.24469 1.14842 0.87566 0.89629 1.26156 0.94054 0.96336 1.03696 1.70192 1.21591 1.25933 1.35220 0.84922 0.78552 0.78297 0.76170 1.19400 1.19251 1.19730 0.91183 0.89642 0.95073 0.87742 0.90208 0.87907 0.88255 0.88242 0.80597 0.93863 0.92020 0.92086 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.89 71.98 0.71 -3.31 16 2 C -0.09 -3.04 6.00 29.85 0.18 -2.86 16 3 C 0.21 7.99 6.12 42.94 0.26 8.26 16 4 N -0.52 -17.59 10.25 -174.98 -1.79 -19.38 16 5 C 0.31 9.34 7.64 138.70 1.06 10.40 16 6 C -0.08 -1.48 10.31 71.23 0.73 -0.75 16 7 N -0.53 -17.63 10.31 -186.73 -1.93 -19.56 16 8 C 0.18 6.57 8.89 85.09 0.76 7.33 16 9 C -0.22 -9.35 4.69 -19.91 -0.09 -9.44 16 10 C 0.48 23.93 6.53 86.75 0.57 24.50 16 11 O -0.62 -35.12 14.84 -3.98 -0.06 -35.18 16 12 N -0.44 -22.62 3.02 -662.35 -2.00 -24.62 16 13 C 0.13 5.82 8.34 127.77 1.07 6.88 16 14 C -0.34 -18.76 9.55 84.10 0.80 -17.95 16 15 H 0.09 5.01 7.20 -2.91 -0.02 4.99 16 16 C 0.00 -0.01 5.42 84.96 0.46 0.45 16 17 N -0.89 -44.96 9.52 21.68 0.21 -44.75 16 18 Si 1.00 40.83 29.56 68.60 2.03 42.85 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 26 H 0.08 3.32 5.73 -2.39 -0.01 3.31 16 27 H 0.10 1.62 8.14 -2.38 -0.02 1.61 16 28 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.18 6.09 7.85 -2.91 -0.02 6.06 16 31 H 0.04 1.75 4.82 -2.39 -0.01 1.74 16 32 H 0.06 3.01 6.89 -2.39 -0.02 2.99 16 33 H 0.06 2.85 7.23 -2.39 -0.02 2.83 16 34 H 0.28 13.04 8.31 -92.71 -0.77 12.27 16 Total: -1.00 -64.08 287.22 4.07 -60.00 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 1.11 Total: 17.13 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 6.51 Total: 23.49 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -5.51 Total: -108.30 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -0.06 Total: -35.18 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Total: -64.08 4.07 -60.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544608544.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.788 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds