Wall clock time and date at job start Thu Apr 9 2020 12:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54946 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55318 * 3 2 1 6 6 H 1.08004 * 120.00150 * 245.60461 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48491 * 109.47220 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47213 * 300.00511 * 9 7 5 12 12 H 1.48499 * 109.47015 * 60.00212 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55540 * 3 2 1 14 14 C 1.34771 * 119.99789 * 274.99899 * 13 3 2 15 15 O 1.21514 * 120.00404 * 359.97438 * 14 13 3 16 16 C 1.48163 * 119.99845 * 179.97438 * 14 13 3 17 17 C 1.40010 * 120.88397 * 0.02562 * 16 14 13 18 18 C 1.37946 * 119.17710 * 179.97438 * 17 16 14 19 19 N 1.31916 * 121.00349 * 0.02663 * 18 17 16 20 20 C 1.32320 * 121.94409 * 359.97438 * 19 18 17 21 21 N 1.39029 * 119.64426 * 180.02562 * 20 19 18 22 22 C 1.39120 * 120.71027 * 359.74161 * 20 19 18 23 23 H 1.08998 * 109.47210 * 299.99485 * 1 2 3 24 24 H 1.08998 * 109.47621 * 60.00436 * 1 2 3 25 25 H 1.09005 * 109.47083 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47210 * 240.00515 * 2 1 3 27 27 H 1.09000 * 109.47548 * 120.00343 * 2 1 3 28 28 H 0.97001 * 119.99410 * 354.82986 * 8 7 5 29 29 H 0.96996 * 119.99999 * 94.99386 * 13 3 2 30 30 H 1.08000 * 120.41033 * 359.95844 * 17 16 14 31 31 H 1.08007 * 119.49770 * 179.97438 * 18 17 16 32 32 H 0.96996 * 119.99714 * 359.97438 * 21 20 19 33 33 H 0.96996 * 119.99947 * 179.97438 * 21 20 19 34 34 H 1.07997 * 120.53783 * 180.27227 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8361 5 6 3.5406 1.4448 -0.1375 6 1 4.1567 1.8042 0.6735 7 6 4.1272 0.9880 -1.2987 8 7 5.4072 0.6862 -1.3142 9 14 3.1039 0.7978 -2.8499 10 1 3.9632 0.2936 -3.9510 11 1 2.0023 -0.1665 -2.6010 12 1 2.5326 2.1145 -3.2305 13 7 1.6638 2.0934 1.2574 14 6 0.4476 2.6599 1.3854 15 8 -0.3368 2.6312 0.4578 16 6 0.0670 3.3177 2.6573 17 6 0.9564 3.3621 3.7377 18 6 0.5656 3.9841 4.9053 19 7 -0.6285 4.5337 5.0157 20 6 -1.5018 4.5162 4.0217 21 7 -2.7472 5.1108 4.1901 22 6 -1.1850 3.9144 2.8081 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 5.9548 0.8552 -0.5316 29 1 2.2900 2.1166 1.9977 30 1 1.9361 2.9146 3.6580 31 1 1.2475 4.0210 5.7421 32 1 -2.9721 5.5351 5.0328 33 1 -3.3912 5.1013 3.4648 34 1 -1.8983 3.9056 1.9973 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577041215.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:56 Heat of formation + Delta-G solvation = -5.247961 kcal Electronic energy + Delta-G solvation = -17926.733410 eV Core-core repulsion = 15052.255488 eV Total energy + Delta-G solvation = -2874.477921 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41508 -38.84985 -35.34663 -34.83452 -32.76216 -32.26015 -31.19453 -29.21631 -27.34121 -24.43835 -23.07230 -22.33543 -20.76842 -19.63772 -18.42048 -17.43772 -17.14437 -16.13993 -15.73839 -15.23756 -14.84038 -14.58179 -14.21852 -13.97153 -13.69688 -13.30589 -12.61383 -12.52597 -12.31165 -11.88932 -11.73749 -10.96751 -10.90094 -10.72545 -10.46652 -9.95251 -9.84221 -9.71592 -9.56122 -9.25891 -9.07133 -8.36962 -8.16081 -7.96635 -6.60812 -4.25086 0.93945 1.30245 3.33020 3.34825 3.37188 3.43106 3.57405 3.81428 4.08005 4.39569 4.64111 4.98299 5.05861 5.14088 5.18521 5.32475 5.70170 5.88198 6.04868 6.07216 6.22364 6.25663 6.45408 6.66356 6.76898 6.90435 7.01025 7.11298 7.30238 7.31577 7.34381 7.59914 8.12466 8.20295 8.38360 8.64903 8.87657 9.44097 10.80144 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.036356 B = 0.005604 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.969645 B = 4994.902556 C = 5386.540451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.246 3.754 4 H 0.043 0.957 5 C -0.618 4.618 6 H 0.062 0.938 7 C 0.040 3.960 8 N -0.897 5.897 9 Si 1.040 2.960 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.280 1.280 13 N -0.688 5.688 14 C 0.541 3.459 15 O -0.541 6.541 16 C -0.036 4.036 17 C -0.204 4.204 18 C 0.143 3.857 19 N -0.539 5.539 20 C 0.396 3.604 21 N -0.853 5.853 22 C -0.184 4.184 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.269 0.731 29 H 0.394 0.606 30 H 0.137 0.863 31 H 0.160 0.840 32 H 0.403 0.597 33 H 0.408 0.592 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.010 5.402 10.373 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.061 0.939 5 C -0.656 4.656 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.530 5.530 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.336 5.336 14 C 0.326 3.674 15 O -0.420 6.420 16 C -0.047 4.047 17 C -0.228 4.228 18 C -0.014 4.014 19 N -0.258 5.258 20 C 0.158 3.842 21 N -0.398 5.398 22 C -0.210 4.210 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.228 0.772 30 H 0.155 0.845 31 H 0.177 0.823 32 H 0.232 0.768 33 H 0.238 0.762 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.640 5.205 8.851 16.285 hybrid contribution 0.255 0.335 1.349 1.414 sum -12.385 5.540 10.200 16.974 Atomic orbital electron populations 1.21892 0.97386 0.98982 1.01924 1.22367 0.93812 0.99636 1.02014 1.19126 0.95993 0.88640 0.81958 0.93886 1.22082 0.89543 1.49688 1.04246 0.91973 1.25672 0.97534 0.92303 1.01155 1.70879 1.07051 1.40774 1.34314 0.84124 0.75520 0.77748 0.75893 1.20882 1.19455 1.20591 1.46211 1.14136 1.54988 1.18278 1.18178 0.83078 0.79477 0.86673 1.90726 1.50994 1.59865 1.40405 1.20397 0.93909 0.95831 0.94545 1.22078 1.01299 1.05018 0.94372 1.22307 0.91201 0.91357 0.96505 1.67005 1.04187 1.23355 1.31244 1.18235 0.86855 0.89962 0.89098 1.42148 1.13621 1.64207 1.19798 1.21444 0.98298 1.03317 0.97899 0.93368 0.92970 0.94968 0.91123 0.92961 0.92072 0.77155 0.84480 0.82304 0.76838 0.76177 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.52 37.15 0.32 -2.60 16 2 C -0.14 -3.09 5.28 -26.73 -0.14 -3.23 16 3 C 0.25 5.80 1.82 -69.08 -0.13 5.68 16 4 H 0.04 1.10 6.25 -51.93 -0.32 0.78 16 5 C -0.62 -16.43 9.01 -34.44 -0.31 -16.74 16 6 H 0.06 1.72 7.96 -52.48 -0.42 1.30 16 7 C 0.04 1.11 5.32 -17.82 -0.09 1.02 16 8 N -0.90 -26.41 13.70 55.43 0.76 -25.65 16 9 Si 1.04 24.79 26.27 -169.99 -4.47 20.33 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.27 -5.97 5.67 56.52 0.32 -5.64 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.69 -13.83 4.99 -55.78 -0.28 -14.11 16 14 C 0.54 10.47 6.39 -12.19 -0.08 10.40 16 15 O -0.54 -11.85 13.58 5.35 0.07 -11.77 16 16 C -0.04 -0.57 5.90 -104.68 -0.62 -1.18 16 17 C -0.20 -2.74 9.61 -39.02 -0.37 -3.11 16 18 C 0.14 1.73 11.16 -17.62 -0.20 1.53 16 19 N -0.54 -7.14 10.37 -12.48 -0.13 -7.27 16 20 C 0.40 5.07 7.74 -155.07 -1.20 3.87 16 21 N -0.85 -7.61 9.07 31.12 0.28 -7.32 16 22 C -0.18 -2.65 9.51 -38.78 -0.37 -3.01 16 23 H 0.05 0.97 5.63 -51.93 -0.29 0.67 16 24 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.63 4.74 -51.93 -0.25 1.38 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.27 7.83 8.73 -40.82 -0.36 7.47 16 29 H 0.39 7.05 6.66 -40.82 -0.27 6.77 16 30 H 0.14 1.62 6.53 -52.49 -0.34 1.28 16 31 H 0.16 1.40 8.06 -52.48 -0.42 0.97 16 32 H 0.40 2.98 8.95 -40.82 -0.37 2.62 16 33 H 0.41 2.74 8.82 -40.82 -0.36 2.38 16 34 H 0.14 1.97 7.74 -52.49 -0.41 1.57 16 LS Contribution 282.35 15.07 4.25 4.25 Total: -1.00 -31.70 282.35 -6.63 -38.33 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -3.94 Total: 10.60 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -3.19 Total: -7.39 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.63 Total: -54.35 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.07 Total: -11.77 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -4.47 Total: 20.33 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.70 -6.63 -38.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577041215.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.082 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds