Wall clock time and date at job start Thu Apr 9 2020 12:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54946 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55318 * 3 2 1 6 6 H 1.08004 * 120.00150 * 245.60461 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48491 * 109.47220 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47213 * 300.00511 * 9 7 5 12 12 H 1.48499 * 109.47015 * 60.00212 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55540 * 3 2 1 14 14 C 1.34771 * 119.99789 * 274.99899 * 13 3 2 15 15 O 1.21514 * 120.00404 * 359.97438 * 14 13 3 16 16 C 1.48163 * 119.99845 * 179.97438 * 14 13 3 17 17 C 1.40010 * 120.88397 * 0.02562 * 16 14 13 18 18 C 1.37946 * 119.17710 * 179.97438 * 17 16 14 19 19 N 1.31916 * 121.00349 * 0.02663 * 18 17 16 20 20 C 1.32320 * 121.94409 * 359.97438 * 19 18 17 21 21 N 1.39029 * 119.64426 * 180.02562 * 20 19 18 22 22 C 1.39120 * 120.71027 * 359.74161 * 20 19 18 23 23 H 1.08998 * 109.47210 * 299.99485 * 1 2 3 24 24 H 1.08998 * 109.47621 * 60.00436 * 1 2 3 25 25 H 1.09005 * 109.47083 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47210 * 240.00515 * 2 1 3 27 27 H 1.09000 * 109.47548 * 120.00343 * 2 1 3 28 28 H 0.97001 * 119.99410 * 354.82986 * 8 7 5 29 29 H 0.96996 * 119.99999 * 94.99386 * 13 3 2 30 30 H 1.08000 * 120.41033 * 359.95844 * 17 16 14 31 31 H 1.08007 * 119.49770 * 179.97438 * 18 17 16 32 32 H 0.96996 * 119.99714 * 359.97438 * 21 20 19 33 33 H 0.96996 * 119.99947 * 179.97438 * 21 20 19 34 34 H 1.07997 * 120.53783 * 180.27227 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8361 5 6 3.5406 1.4448 -0.1375 6 1 4.1567 1.8042 0.6735 7 6 4.1272 0.9880 -1.2987 8 7 5.4072 0.6862 -1.3142 9 14 3.1039 0.7978 -2.8499 10 1 3.9632 0.2936 -3.9510 11 1 2.0023 -0.1665 -2.6010 12 1 2.5326 2.1145 -3.2305 13 7 1.6638 2.0934 1.2574 14 6 0.4476 2.6599 1.3854 15 8 -0.3368 2.6312 0.4578 16 6 0.0670 3.3177 2.6573 17 6 0.9564 3.3621 3.7377 18 6 0.5656 3.9841 4.9053 19 7 -0.6285 4.5337 5.0157 20 6 -1.5018 4.5162 4.0217 21 7 -2.7472 5.1108 4.1901 22 6 -1.1850 3.9144 2.8081 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 5.9548 0.8552 -0.5316 29 1 2.2900 2.1166 1.9977 30 1 1.9361 2.9146 3.6580 31 1 1.2475 4.0210 5.7421 32 1 -2.9721 5.5351 5.0328 33 1 -3.3912 5.1013 3.4648 34 1 -1.8983 3.9056 1.9973 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577041215.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:55 Heat of formation + Delta-G solvation = -28.883011 kcal Electronic energy + Delta-G solvation = -17927.758302 eV Core-core repulsion = 15052.255488 eV Total energy + Delta-G solvation = -2875.502814 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.60046 -40.26516 -37.12530 -35.76615 -34.50113 -33.81969 -32.69704 -30.20106 -29.18263 -25.78229 -24.19250 -24.07411 -22.29527 -21.30975 -20.08538 -18.84325 -18.32906 -17.26992 -17.18184 -16.64671 -16.27738 -15.68052 -15.54857 -15.18248 -15.06135 -14.80475 -14.52909 -14.33836 -14.02945 -13.62474 -12.90348 -12.70054 -12.49730 -12.31119 -11.84774 -11.78925 -11.44043 -11.21749 -11.03989 -10.83922 -10.52272 -10.47172 -9.87257 -8.86480 -8.79867 -6.44710 -0.22487 0.31043 1.45849 1.50830 1.69623 1.97204 2.24757 2.41794 2.60800 2.95298 3.01617 3.64511 3.73903 4.03876 4.12281 4.28986 4.34679 4.39072 4.51891 4.72579 4.78088 4.87616 5.08530 5.16521 5.19178 5.28733 5.49595 5.53221 5.61271 5.66760 6.00756 6.29369 6.51847 6.52651 6.74672 7.23498 7.25186 7.34638 8.60259 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.036356 B = 0.005604 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.969645 B = 4994.902556 C = 5386.540451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.250 3.750 4 H 0.025 0.975 5 C -0.613 4.613 6 H 0.042 0.958 7 C -0.003 4.003 8 N -0.928 5.928 9 Si 1.069 2.931 10 H -0.283 1.283 11 H -0.242 1.242 12 H -0.275 1.275 13 N -0.690 5.690 14 C 0.543 3.457 15 O -0.570 6.570 16 C -0.055 4.055 17 C -0.209 4.209 18 C 0.151 3.849 19 N -0.547 5.547 20 C 0.396 3.604 21 N -0.836 5.836 22 C -0.194 4.194 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.258 0.742 29 H 0.404 0.596 30 H 0.149 0.851 31 H 0.196 0.804 32 H 0.413 0.587 33 H 0.419 0.581 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.674 5.692 11.659 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.175 4.175 3 C 0.146 3.854 4 H 0.042 0.958 5 C -0.651 4.651 6 H 0.060 0.940 7 C -0.204 4.204 8 N -0.562 5.562 9 Si 0.891 3.109 10 H -0.208 1.208 11 H -0.167 1.167 12 H -0.200 1.200 13 N -0.339 5.339 14 C 0.330 3.670 15 O -0.451 6.451 16 C -0.066 4.066 17 C -0.232 4.232 18 C -0.006 4.006 19 N -0.267 5.267 20 C 0.158 3.842 21 N -0.381 5.381 22 C -0.220 4.220 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.240 0.760 30 H 0.166 0.834 31 H 0.212 0.788 32 H 0.244 0.756 33 H 0.251 0.749 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.348 5.518 10.179 18.437 hybrid contribution 0.743 0.342 1.079 1.354 sum -13.604 5.859 11.258 18.605 Atomic orbital electron populations 1.21775 0.95602 1.00479 1.01330 1.22262 0.95316 0.98165 1.01787 1.18842 0.93731 0.89817 0.83048 0.95753 1.22266 0.91276 1.48244 1.03352 0.93991 1.26775 0.97688 0.92045 1.03873 1.70980 1.08028 1.43193 1.34047 0.83753 0.75254 0.78661 0.73189 1.20843 1.16685 1.20046 1.46022 1.15034 1.55349 1.17491 1.18634 0.82128 0.78636 0.87626 1.90698 1.51667 1.60874 1.41847 1.20163 0.95397 0.97386 0.93614 1.22219 1.01415 1.05395 0.94164 1.22872 0.91219 0.89611 0.96848 1.67152 1.04674 1.23657 1.31187 1.18359 0.87891 0.89579 0.88418 1.42142 1.12438 1.62827 1.20713 1.21472 0.97910 1.03941 0.98712 0.93617 0.93931 0.92354 0.91982 0.92544 0.93208 0.76012 0.83379 0.78773 0.75640 0.74873 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 8.52 71.98 0.61 -4.58 16 2 C -0.14 -5.89 5.28 30.59 0.16 -5.72 16 3 C 0.25 11.74 1.82 44.25 0.08 11.82 16 4 H 0.02 1.26 6.25 -2.39 -0.01 1.24 16 5 C -0.61 -32.97 9.01 25.60 0.23 -32.74 16 6 H 0.04 2.37 7.96 -2.91 -0.02 2.35 16 7 C 0.00 -0.16 5.32 84.66 0.45 0.29 16 8 N -0.93 -55.54 13.70 21.45 0.29 -55.24 16 9 Si 1.07 49.73 26.27 68.60 1.80 51.54 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.24 -10.20 5.67 99.48 0.56 -9.64 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 N -0.69 -27.51 4.99 -448.68 -2.24 -29.75 16 14 C 0.54 20.77 6.39 86.88 0.56 21.32 16 15 O -0.57 -24.86 13.58 -3.76 -0.05 -24.91 16 16 C -0.05 -1.68 5.90 -19.90 -0.12 -1.80 16 17 C -0.21 -5.20 9.61 22.63 0.22 -4.98 16 18 C 0.15 3.22 11.16 84.61 0.94 4.17 16 19 N -0.55 -12.97 10.37 -193.40 -2.00 -14.98 16 20 C 0.40 9.26 7.74 133.07 1.03 10.29 16 21 N -0.84 -12.78 9.07 -55.47 -0.50 -13.29 16 22 C -0.19 -5.34 9.51 22.79 0.22 -5.13 16 23 H 0.04 1.77 5.63 -2.39 -0.01 1.76 16 24 H 0.04 1.71 7.88 -2.39 -0.02 1.69 16 25 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.06 2.77 4.74 -2.39 -0.01 2.75 16 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.26 15.49 8.73 -92.71 -0.81 14.68 16 29 H 0.40 14.29 6.66 -92.71 -0.62 13.67 16 30 H 0.15 3.25 6.53 -2.91 -0.02 3.23 16 31 H 0.20 2.65 8.06 -2.91 -0.02 2.62 16 32 H 0.41 4.94 8.95 -92.71 -0.83 4.11 16 33 H 0.42 4.64 8.82 -92.71 -0.82 3.82 16 34 H 0.14 3.80 7.74 -2.91 -0.02 3.77 16 Total: -1.00 -67.92 282.35 0.40 -67.52 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: -1.28 Total: 26.17 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 4.38 Total: -7.06 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -4.45 Total: -113.26 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.91 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 1.80 Total: 51.54 kcal Total: -67.92 0.40 -67.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577041215.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.632 kcal (2) G-P(sol) polarization free energy of solvation -67.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds