Wall clock time and date at job start Thu Apr 9 2020 12:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38390 * 120.00181 * 2 1 4 4 N 1.32127 * 119.99735 * 179.76813 * 3 2 1 5 5 C 1.32152 * 120.00119 * 0.50729 * 4 3 2 6 6 C 1.50695 * 120.00153 * 179.76808 * 5 4 3 7 7 N 1.46900 * 109.47114 * 274.72465 * 6 5 4 8 8 C 1.47964 * 110.99873 * 169.99772 * 7 6 5 9 9 C 1.53936 * 86.17896 * 222.41598 * 8 7 6 10 10 O 1.42894 * 113.73695 * 269.25386 * 9 8 7 11 11 C 1.50710 * 113.72850 * 138.07690 * 9 8 7 12 12 H 1.07993 * 120.00160 * 6.89305 * 11 9 8 13 13 C 1.37874 * 119.99500 * 186.88767 * 11 9 8 14 14 N 1.31522 * 119.99594 * 178.34163 * 13 11 9 15 15 Si 1.86798 * 120.00325 * 358.34373 * 13 11 9 16 16 H 1.48495 * 109.47265 * 269.99805 * 15 13 11 17 17 H 1.48505 * 109.47143 * 29.99904 * 15 13 11 18 18 H 1.48499 * 109.47179 * 149.99934 * 15 13 11 19 19 C 1.48192 * 111.06814 * 70.56745 * 7 6 5 20 20 C 1.38350 * 119.99830 * 359.49255 * 5 4 3 21 21 N 1.32129 * 120.00028 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.46891 * 269.97661 * 1 2 3 23 23 H 1.08996 * 109.46895 * 29.97768 * 1 2 3 24 24 H 1.09004 * 109.47051 * 149.97894 * 1 2 3 25 25 H 1.07997 * 119.99783 * 0.02579 * 3 2 1 26 26 H 1.09003 * 109.47364 * 154.71925 * 6 5 4 27 27 H 1.09004 * 109.47082 * 34.72757 * 6 5 4 28 28 H 1.09002 * 113.75665 * 108.09615 * 8 7 6 29 29 H 1.09000 * 113.75903 * 336.73679 * 8 7 6 30 30 H 0.96694 * 114.00278 * 162.48386 * 10 9 8 31 31 H 0.96996 * 120.00167 * 358.20463 * 14 13 11 32 32 H 1.08996 * 113.75836 * 23.23806 * 19 7 6 33 33 H 1.09005 * 113.81861 * 251.80777 * 19 7 6 34 34 H 1.08001 * 119.99556 * 180.28013 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5202 1.1984 0.0046 5 6 4.1810 0.0539 -0.0009 6 6 5.6879 0.0538 -0.0009 7 7 6.1776 0.1745 -1.3806 8 6 7.6369 0.4175 -1.4059 9 6 7.3417 1.4505 -2.5083 10 8 7.3871 0.9099 -3.8303 11 6 8.1290 2.7281 -2.3688 12 1 8.9008 2.8074 -1.6176 13 6 7.8639 3.7954 -3.2003 14 7 8.5284 4.9214 -3.0571 15 14 6.5610 3.6424 -4.5301 16 1 7.1865 3.1431 -5.7809 17 1 5.5111 2.6899 -4.0872 18 1 5.9494 4.9725 -4.7792 19 6 5.9215 1.5308 -1.9200 20 6 3.4891 -1.1442 -0.0009 21 7 2.1676 -1.1443 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6590 2.1337 0.0004 26 1 6.0512 -0.8776 0.4335 27 1 6.0513 0.8956 0.5886 28 1 8.2186 -0.4378 -1.7499 29 1 8.0253 0.8552 -0.4864 30 1 6.9524 1.4607 -4.4956 31 1 9.1864 5.0096 -2.3500 32 1 5.8071 2.2948 -1.1512 33 1 5.1350 1.5633 -2.6741 34 1 4.0292 -2.0795 -0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617442613.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:59 Heat of formation + Delta-G solvation = 43.001953 kcal Electronic energy + Delta-G solvation = -18106.854110 eV Core-core repulsion = 15234.468462 eV Total energy + Delta-G solvation = -2872.385648 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.14496 -39.27005 -35.28855 -34.22052 -33.02211 -32.48912 -30.17833 -27.33172 -25.47761 -25.23651 -24.57576 -22.74166 -21.13010 -19.09041 -17.91457 -17.67367 -16.28829 -15.85601 -15.69961 -15.40027 -14.99178 -14.56460 -13.92106 -13.39269 -13.11825 -12.92913 -12.79870 -12.65422 -12.26365 -12.03943 -11.66425 -11.47794 -11.22944 -11.16163 -11.00868 -10.52144 -10.26007 -9.57323 -9.39807 -9.06796 -8.99456 -8.70401 -8.51529 -8.11215 -6.57078 -4.33180 0.78293 1.18381 3.22008 3.26225 3.41806 3.64499 3.99773 4.19950 4.30446 4.47692 4.63295 4.69087 4.94479 5.03462 5.12275 5.33143 5.37427 5.48090 5.54007 5.60562 5.71662 5.79813 5.87321 5.92427 6.22754 6.39303 6.42998 6.61851 6.84688 6.89984 7.33714 7.62903 7.72681 7.84768 8.17995 8.64109 8.73087 9.41489 10.77318 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028853 B = 0.006338 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.218795 B = 4416.910541 C = 4843.245445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.064 3.936 3 C 0.053 3.947 4 N -0.426 5.426 5 C 0.093 3.907 6 C 0.068 3.932 7 N -0.476 5.476 8 C 0.026 3.974 9 C 0.200 3.800 10 O -0.555 6.555 11 C -0.607 4.607 12 H 0.066 0.934 13 C 0.036 3.964 14 N -0.899 5.899 15 Si 1.036 2.964 16 H -0.276 1.276 17 H -0.270 1.270 18 H -0.284 1.284 19 C -0.022 4.022 20 C 0.069 3.931 21 N -0.442 5.442 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.166 0.834 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.349 0.651 31 H 0.271 0.729 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.183 -8.712 6.518 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.077 4.077 3 C -0.107 4.107 4 N -0.140 5.140 5 C -0.048 4.048 6 C -0.062 4.062 7 N -0.200 5.200 8 C -0.102 4.102 9 C 0.160 3.840 10 O -0.364 6.364 11 C -0.645 4.645 12 H 0.084 0.916 13 C -0.171 4.171 14 N -0.533 5.533 15 Si 0.866 3.134 16 H -0.203 1.203 17 H -0.197 1.197 18 H -0.211 1.211 19 C -0.150 4.150 20 C -0.092 4.092 21 N -0.158 5.158 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.183 0.817 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.199 0.801 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.850 -8.936 5.293 17.311 hybrid contribution 0.768 0.359 1.572 1.786 sum -13.082 -8.577 6.865 17.083 Atomic orbital electron populations 1.20638 0.87946 1.03783 1.03154 1.22279 0.98339 0.89899 0.97149 1.23613 0.90713 0.99088 0.97309 1.68325 1.08495 1.29581 1.07640 1.22160 0.97914 0.89497 0.95213 1.21521 0.87634 1.02562 0.94435 1.68739 1.07940 1.29262 1.14012 1.23956 0.88824 0.98921 0.98538 1.20500 0.91096 0.91965 0.80482 1.86444 1.80788 1.51127 1.18074 1.22375 1.22597 0.97370 1.22133 0.91596 1.25770 0.99486 0.92381 0.99462 1.70789 1.23648 1.26151 1.32665 0.84237 0.76348 0.76490 0.76348 1.20286 1.19652 1.21062 1.25109 1.01100 0.88955 0.99886 1.23534 0.90215 0.99350 0.96074 1.68276 1.08797 1.29330 1.09372 0.90283 0.90317 0.90357 0.81651 0.89290 0.92077 0.89970 0.90881 0.80086 0.91916 0.90196 0.91152 0.81429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.19 36.01 0.37 -0.43 16 2 C 0.06 0.80 6.79 -82.41 -0.56 0.24 16 3 C 0.05 0.71 10.88 -17.37 -0.19 0.52 16 4 N -0.43 -7.00 10.00 -9.29 -0.09 -7.09 16 5 C 0.09 1.47 5.95 -82.42 -0.49 0.98 16 6 C 0.07 1.10 5.16 -4.98 -0.03 1.07 16 7 N -0.48 -9.38 6.25 -239.47 -1.50 -10.87 16 8 C 0.03 0.54 7.37 -2.76 -0.02 0.52 16 9 C 0.20 4.88 1.06 -90.83 -0.10 4.78 16 10 O -0.56 -13.78 13.26 -35.23 -0.47 -14.25 16 11 C -0.61 -16.87 9.05 -34.44 -0.31 -17.18 16 12 H 0.07 1.94 8.04 -52.49 -0.42 1.52 16 13 C 0.04 1.01 5.47 -17.82 -0.10 0.91 16 14 N -0.90 -27.06 13.70 55.43 0.76 -26.30 16 15 Si 1.04 24.34 24.77 -169.99 -4.21 20.13 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.27 -5.87 4.71 56.52 0.27 -5.60 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C -0.02 -0.48 5.40 -2.63 -0.01 -0.49 16 20 C 0.07 0.97 10.86 -17.37 -0.19 0.78 16 21 N -0.44 -6.25 10.42 -9.28 -0.10 -6.34 16 22 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 26 H 0.09 1.17 8.05 -51.93 -0.42 0.76 16 27 H 0.06 1.03 7.70 -51.93 -0.40 0.63 16 28 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 29 H 0.07 1.45 7.74 -51.93 -0.40 1.05 16 30 H 0.35 8.09 4.33 45.56 0.20 8.29 16 31 H 0.27 8.08 8.71 -40.82 -0.36 7.73 16 32 H 0.08 1.84 7.74 -51.93 -0.40 1.44 16 33 H 0.07 1.61 6.55 -51.93 -0.34 1.27 16 34 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 282.99 15.07 4.26 4.26 Total: -1.00 -32.37 282.99 -6.97 -39.35 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.01 Total: 9.42 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.63 Total: -8.31 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.93 Total: -50.61 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.47 Total: -14.25 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -4.21 Total: 20.13 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.37 -6.97 -39.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617442613.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.348 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds