Wall clock time and date at job start Thu Apr 9 2020 12:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38390 * 120.00181 * 2 1 4 4 N 1.32127 * 119.99735 * 179.76813 * 3 2 1 5 5 C 1.32152 * 120.00119 * 0.50729 * 4 3 2 6 6 C 1.50695 * 120.00153 * 179.76808 * 5 4 3 7 7 N 1.46900 * 109.47114 * 274.72465 * 6 5 4 8 8 C 1.47964 * 110.99873 * 169.99772 * 7 6 5 9 9 C 1.53936 * 86.17896 * 222.41598 * 8 7 6 10 10 O 1.42894 * 113.73695 * 269.25386 * 9 8 7 11 11 C 1.50710 * 113.72850 * 138.07690 * 9 8 7 12 12 H 1.07993 * 120.00160 * 6.89305 * 11 9 8 13 13 C 1.37874 * 119.99500 * 186.88767 * 11 9 8 14 14 N 1.31522 * 119.99594 * 178.34163 * 13 11 9 15 15 Si 1.86798 * 120.00325 * 358.34373 * 13 11 9 16 16 H 1.48495 * 109.47265 * 269.99805 * 15 13 11 17 17 H 1.48505 * 109.47143 * 29.99904 * 15 13 11 18 18 H 1.48499 * 109.47179 * 149.99934 * 15 13 11 19 19 C 1.48192 * 111.06814 * 70.56745 * 7 6 5 20 20 C 1.38350 * 119.99830 * 359.49255 * 5 4 3 21 21 N 1.32129 * 120.00028 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.46891 * 269.97661 * 1 2 3 23 23 H 1.08996 * 109.46895 * 29.97768 * 1 2 3 24 24 H 1.09004 * 109.47051 * 149.97894 * 1 2 3 25 25 H 1.07997 * 119.99783 * 0.02579 * 3 2 1 26 26 H 1.09003 * 109.47364 * 154.71925 * 6 5 4 27 27 H 1.09004 * 109.47082 * 34.72757 * 6 5 4 28 28 H 1.09002 * 113.75665 * 108.09615 * 8 7 6 29 29 H 1.09000 * 113.75903 * 336.73679 * 8 7 6 30 30 H 0.96694 * 114.00278 * 162.48386 * 10 9 8 31 31 H 0.96996 * 120.00167 * 358.20463 * 14 13 11 32 32 H 1.08996 * 113.75836 * 23.23806 * 19 7 6 33 33 H 1.09005 * 113.81861 * 251.80777 * 19 7 6 34 34 H 1.08001 * 119.99556 * 180.28013 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5202 1.1984 0.0046 5 6 4.1810 0.0539 -0.0009 6 6 5.6879 0.0538 -0.0009 7 7 6.1776 0.1745 -1.3806 8 6 7.6369 0.4175 -1.4059 9 6 7.3417 1.4505 -2.5083 10 8 7.3871 0.9099 -3.8303 11 6 8.1290 2.7281 -2.3688 12 1 8.9008 2.8074 -1.6176 13 6 7.8639 3.7954 -3.2003 14 7 8.5284 4.9214 -3.0571 15 14 6.5610 3.6424 -4.5301 16 1 7.1865 3.1431 -5.7809 17 1 5.5111 2.6899 -4.0872 18 1 5.9494 4.9725 -4.7792 19 6 5.9215 1.5308 -1.9200 20 6 3.4891 -1.1442 -0.0009 21 7 2.1676 -1.1443 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6590 2.1337 0.0004 26 1 6.0512 -0.8776 0.4335 27 1 6.0513 0.8956 0.5886 28 1 8.2186 -0.4378 -1.7499 29 1 8.0253 0.8552 -0.4864 30 1 6.9524 1.4607 -4.4956 31 1 9.1864 5.0096 -2.3500 32 1 5.8071 2.2948 -1.1512 33 1 5.1350 1.5633 -2.6741 34 1 4.0292 -2.0795 -0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617442613.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:59 Heat of formation + Delta-G solvation = 14.772722 kcal Electronic energy + Delta-G solvation = -18108.078221 eV Core-core repulsion = 15234.468462 eV Total energy + Delta-G solvation = -2873.609759 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.22204 -40.94413 -36.89267 -35.47707 -34.67080 -34.06991 -31.42380 -28.83692 -27.18660 -26.75883 -25.63530 -24.13295 -22.47340 -20.93575 -19.97301 -18.79113 -17.73043 -17.31298 -16.99447 -16.72586 -16.62102 -15.80617 -15.33221 -15.13464 -14.78289 -14.23638 -13.96497 -13.77649 -13.56461 -13.28806 -13.22072 -12.91134 -12.74734 -12.54145 -12.27641 -12.13565 -12.05633 -11.57738 -11.22390 -10.83502 -10.52602 -10.10462 -10.00332 -9.77931 -8.80477 -6.59642 -0.23906 0.13174 1.32206 1.42009 1.55326 2.34841 2.56505 2.83363 2.99827 3.09581 3.22821 3.47098 3.62798 3.69684 3.94918 4.04097 4.08874 4.16973 4.40971 4.48720 4.58755 4.63782 4.73384 4.77249 4.83518 4.86663 5.09107 5.10758 5.22902 5.45707 5.66267 5.86594 6.03088 6.31771 6.37282 6.80143 6.81345 7.24028 8.51116 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028853 B = 0.006338 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.218795 B = 4416.910541 C = 4843.245445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.071 3.929 3 C 0.044 3.956 4 N -0.459 5.459 5 C 0.067 3.933 6 C 0.071 3.929 7 N -0.469 5.469 8 C 0.033 3.967 9 C 0.182 3.818 10 O -0.560 6.560 11 C -0.613 4.613 12 H 0.033 0.967 13 C -0.014 4.014 14 N -0.930 5.930 15 Si 1.071 2.929 16 H -0.254 1.254 17 H -0.244 1.244 18 H -0.284 1.284 19 C -0.005 4.005 20 C 0.070 3.930 21 N -0.459 5.459 22 H 0.097 0.903 23 H 0.101 0.899 24 H 0.079 0.921 25 H 0.194 0.806 26 H 0.122 0.878 27 H 0.049 0.951 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.356 0.644 31 H 0.256 0.744 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.668 -10.299 6.358 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.070 4.070 3 C -0.117 4.117 4 N -0.174 5.174 5 C -0.073 4.073 6 C -0.058 4.058 7 N -0.192 5.192 8 C -0.096 4.096 9 C 0.141 3.859 10 O -0.370 6.370 11 C -0.651 4.651 12 H 0.051 0.949 13 C -0.213 4.213 14 N -0.565 5.565 15 Si 0.893 3.107 16 H -0.179 1.179 17 H -0.169 1.169 18 H -0.211 1.211 19 C -0.134 4.134 20 C -0.089 4.089 21 N -0.175 5.175 22 H 0.115 0.885 23 H 0.120 0.880 24 H 0.098 0.902 25 H 0.211 0.789 26 H 0.140 0.860 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.206 0.794 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -16.313 -10.557 5.151 20.103 hybrid contribution 1.509 0.845 1.722 2.441 sum -14.804 -9.712 6.873 18.993 Atomic orbital electron populations 1.20789 0.84860 1.04997 1.04628 1.22951 1.00272 0.89152 0.94654 1.24134 0.89899 1.00762 0.96882 1.68252 1.10239 1.30433 1.08524 1.22073 0.97493 0.90171 0.97530 1.21557 0.88492 1.03742 0.92020 1.68643 1.06870 1.27053 1.16659 1.23899 0.90061 0.98263 0.97340 1.20631 0.92313 0.91621 0.81312 1.86421 1.81123 1.51117 1.18323 1.22576 1.22025 0.99453 1.21086 0.94916 1.27190 1.00814 0.91756 1.01550 1.70912 1.24866 1.27565 1.33197 0.83832 0.74840 0.77227 0.74785 1.17924 1.16942 1.21090 1.24746 0.99084 0.90271 0.99334 1.23817 0.90483 0.99559 0.95084 1.68392 1.08785 1.30129 1.10189 0.88469 0.88035 0.90211 0.78924 0.86046 0.93227 0.88779 0.90520 0.79380 0.93445 0.91612 0.91456 0.79326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.19 71.24 0.73 -0.50 16 2 C 0.07 1.56 6.79 42.55 0.29 1.85 16 3 C 0.04 1.07 10.88 84.68 0.92 1.99 16 4 N -0.46 -14.48 10.00 -183.30 -1.83 -16.31 16 5 C 0.07 2.01 5.95 42.54 0.25 2.26 16 6 C 0.07 2.18 5.16 85.56 0.44 2.62 16 7 N -0.47 -17.70 6.25 -914.76 -5.72 -23.42 16 8 C 0.03 1.33 7.37 86.41 0.64 1.96 16 9 C 0.18 8.75 1.06 -10.89 -0.01 8.74 16 10 O -0.56 -26.91 13.26 -148.98 -1.98 -28.88 16 11 C -0.61 -34.82 9.05 25.60 0.23 -34.59 16 12 H 0.03 2.01 8.04 -2.91 -0.02 1.99 16 13 C -0.01 -0.78 5.47 84.65 0.46 -0.31 16 14 N -0.93 -57.59 13.70 21.45 0.29 -57.29 16 15 Si 1.07 48.40 24.77 68.60 1.70 50.10 16 16 H -0.25 -10.55 7.11 99.48 0.71 -9.85 16 17 H -0.24 -9.94 4.71 99.48 0.47 -9.47 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 C 0.00 -0.22 5.40 86.37 0.47 0.25 16 20 C 0.07 1.82 10.86 84.67 0.92 2.74 16 21 N -0.46 -11.85 10.42 -183.29 -1.91 -13.76 16 22 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.10 0.87 8.09 -2.39 -0.02 0.85 16 24 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.19 3.34 8.06 -2.91 -0.02 3.31 16 26 H 0.12 2.89 8.05 -2.39 -0.02 2.87 16 27 H 0.05 1.64 7.70 -2.38 -0.02 1.62 16 28 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 29 H 0.08 3.02 7.74 -2.39 -0.02 3.00 16 30 H 0.36 15.71 4.33 -74.06 -0.32 15.39 16 31 H 0.26 16.05 8.71 -92.71 -0.81 15.24 16 32 H 0.07 3.03 7.74 -2.39 -0.02 3.02 16 33 H 0.07 2.96 6.55 -2.38 -0.02 2.94 16 34 H 0.19 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -70.82 282.99 -3.59 -74.41 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.52 Total: 28.13 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 5.34 Total: -12.97 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -9.17 Total: -110.78 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.98 Total: -28.88 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 1.70 Total: 50.10 kcal Total: -70.82 -3.59 -74.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617442613.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.186 kcal (2) G-P(sol) polarization free energy of solvation -70.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds