Wall clock time and date at job start Thu Apr 9 2020 12:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00250 * 2 1 4 4 C 1.53004 * 109.46924 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.47087 * 240.00373 * 3 2 1 6 6 C 1.50700 * 109.47148 * 119.99987 * 3 2 1 7 7 O 1.21303 * 119.99816 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99675 * 180.28037 * 6 3 2 9 9 C 1.40595 * 119.99527 * 179.72943 * 8 6 3 10 10 C 1.40649 * 126.08553 * 359.68015 * 9 8 6 11 11 N 1.30903 * 108.38945 * 179.87998 * 10 9 8 12 12 N 1.40074 * 108.40705 * 0.38914 * 11 10 9 13 13 C 1.37320 * 126.07077 * 179.73305 * 12 11 10 14 14 H 1.07999 * 120.00028 * 180.02562 * 13 12 11 15 15 C 1.38983 * 120.00055 * 0.02562 * 13 12 11 16 16 N 1.31296 * 119.99923 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00025 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46692 * 90.00217 * 17 15 13 19 19 H 1.48503 * 109.47299 * 209.99837 * 17 15 13 20 20 H 1.48503 * 109.47411 * 330.00357 * 17 15 13 21 21 C 1.35679 * 126.07814 * 179.97438 * 9 8 6 22 22 H 1.08003 * 119.99784 * 179.97438 * 1 2 3 23 23 H 1.07997 * 119.99597 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.00267 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47212 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.47221 * 300.00722 * 4 3 2 27 27 H 1.09006 * 109.47154 * 59.99850 * 4 3 2 28 28 H 1.08995 * 109.47223 * 299.99290 * 5 3 2 29 29 H 1.08996 * 109.47637 * 59.99812 * 5 3 2 30 30 H 1.09004 * 109.46762 * 179.97438 * 5 3 2 31 31 H 0.97001 * 120.00485 * 359.71840 * 8 6 3 32 32 H 1.07999 * 125.80209 * 0.02562 * 10 9 8 33 33 H 0.97004 * 120.00252 * 179.97438 * 16 15 13 34 34 H 1.07996 * 126.24944 * 359.92772 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0693 2.4681 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9300 1.3849 1.2305 7 8 2.9354 0.4715 2.0287 8 7 3.6949 2.4733 1.4465 9 6 4.4988 2.5502 2.5974 10 6 4.5981 1.5743 3.6053 11 7 5.4443 1.9988 4.5093 12 7 5.9102 3.2614 4.1208 13 6 6.8085 4.0389 4.8094 14 1 7.1006 5.0020 4.4178 15 6 7.3418 3.5863 6.0104 16 7 6.9871 2.4151 6.4863 17 14 8.5643 4.6436 6.9469 18 1 7.8335 5.5270 7.8907 19 1 9.4947 3.7699 7.7061 20 1 9.3365 5.4743 5.9883 21 6 5.3127 3.5816 2.9360 22 1 -0.5400 -0.9354 -0.0004 23 1 -0.5399 0.9353 0.0004 24 1 1.8501 -0.9353 -0.0004 25 1 1.6143 3.4120 -0.0002 26 1 0.4429 2.4101 -0.8908 27 1 0.4423 2.4105 0.8891 28 1 3.6514 0.5577 -1.2493 29 1 2.3165 1.3284 -2.1392 30 1 3.4878 2.3303 -1.2494 31 1 3.6909 3.2036 0.8080 32 1 4.0683 0.6335 3.6281 33 1 7.3595 2.0990 7.3243 34 1 5.4611 4.4901 2.3712 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631316728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:00 Heat of formation + Delta-G solvation = 40.791357 kcal Electronic energy + Delta-G solvation = -17821.187555 eV Core-core repulsion = 14948.706049 eV Total energy + Delta-G solvation = -2872.481507 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.81659 -40.66566 -37.27838 -35.94219 -34.96127 -32.30118 -31.72022 -29.47482 -28.25680 -26.88815 -24.94806 -22.94440 -22.31048 -21.18125 -19.63415 -19.06665 -17.92472 -17.38701 -16.95296 -16.31750 -16.13408 -15.60065 -15.24231 -15.12956 -14.82496 -14.58240 -13.51275 -13.39245 -13.34187 -13.17061 -13.01910 -12.89572 -12.80404 -12.64674 -12.11690 -12.07394 -11.81172 -11.62201 -11.00385 -10.82971 -10.61606 -10.22388 -10.10318 -8.52122 -8.46821 -6.24334 1.22716 1.33827 1.40472 1.54759 1.58412 1.87631 2.09146 2.40440 2.52934 2.94128 3.09339 3.64846 3.84977 4.05489 4.17337 4.43622 4.49651 4.60068 4.73507 4.80635 4.89255 4.90646 5.00416 5.09464 5.10321 5.27827 5.29607 5.32759 5.49271 5.73946 5.86666 5.96179 6.32060 6.73920 6.78189 7.42056 7.48047 7.68459 8.52791 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.057873 B = 0.004582 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.703328 B = 6108.960461 C = 6363.888163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C -0.042 4.042 4 C -0.142 4.142 5 C -0.134 4.134 6 C 0.505 3.495 7 O -0.581 6.581 8 N -0.614 5.614 9 C -0.045 4.045 10 C -0.063 4.063 11 N -0.311 5.311 12 N -0.168 5.168 13 C -0.355 4.355 14 H 0.142 0.858 15 C -0.007 4.007 16 N -0.827 5.827 17 Si 1.020 2.980 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.243 1.243 21 C -0.081 4.081 22 H 0.108 0.892 23 H 0.119 0.881 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.418 0.582 32 H 0.163 0.837 33 H 0.276 0.724 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.074 4.291 -14.764 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.165 4.165 3 C -0.045 4.045 4 C -0.199 4.199 5 C -0.191 4.191 6 C 0.293 3.707 7 O -0.460 6.460 8 N -0.259 5.259 9 C -0.151 4.151 10 C -0.238 4.238 11 N -0.144 5.144 12 N 0.063 4.937 13 C -0.486 4.486 14 H 0.160 0.840 15 C -0.218 4.218 16 N -0.455 5.455 17 Si 0.839 3.161 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.166 1.166 21 C -0.231 4.231 22 H 0.127 0.873 23 H 0.137 0.863 24 H 0.114 0.886 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.255 0.745 32 H 0.180 0.820 33 H 0.086 0.914 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.464 3.238 -12.949 15.292 hybrid contribution 0.144 0.229 -0.173 0.321 sum -7.319 3.467 -13.122 15.420 Atomic orbital electron populations 1.24159 0.95233 1.03399 0.99102 1.22535 0.96371 0.96443 1.01198 1.19871 0.95485 0.96777 0.92374 1.22003 0.98484 0.95811 1.03605 1.21851 0.99114 1.02879 0.95305 1.21319 0.80142 0.81084 0.88167 1.90569 1.67099 1.39655 1.48682 1.42493 1.41481 1.20687 1.21210 1.17398 1.05722 0.98023 0.93926 1.24114 1.03077 1.01659 0.94926 1.78141 1.16869 0.96152 1.23201 1.44845 1.25448 1.10733 1.12664 1.20648 1.20744 1.02091 1.05120 0.84044 1.26902 0.99733 0.97495 0.97701 1.70411 1.38004 1.18531 1.18516 0.84579 0.76407 0.77169 0.77944 1.18862 1.20269 1.16599 1.22006 1.05010 1.02445 0.93657 0.87350 0.86290 0.88569 0.90466 0.88281 0.92938 0.93315 0.88737 0.90424 0.74473 0.81984 0.91434 0.79367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.63 13.70 67.78 0.93 -2.70 16 2 C -0.15 -3.63 8.00 25.65 0.21 -3.43 16 3 C -0.04 -0.98 0.84 -53.67 -0.05 -1.03 16 4 C -0.14 -2.46 7.02 71.98 0.51 -1.95 16 5 C -0.13 -2.40 8.35 71.98 0.60 -1.80 16 6 C 0.50 17.94 6.45 87.66 0.57 18.50 16 7 O -0.58 -26.76 13.19 -3.10 -0.04 -26.80 16 8 N -0.61 -21.47 5.25 -303.92 -1.60 -23.06 16 9 C -0.04 -2.10 6.90 37.73 0.26 -1.84 16 10 C -0.06 -3.54 10.85 85.42 0.93 -2.62 16 11 N -0.31 -19.30 10.40 -56.47 -0.59 -19.89 16 12 N -0.17 -9.48 3.74 -190.02 -0.71 -10.19 16 13 C -0.36 -19.01 10.25 84.01 0.86 -18.15 16 14 H 0.14 6.51 7.83 -2.91 -0.02 6.49 16 15 C -0.01 -0.36 5.50 84.95 0.47 0.10 16 16 N -0.83 -48.57 11.81 21.66 0.26 -48.31 16 17 Si 1.02 38.88 29.55 68.60 2.03 40.91 16 18 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 19 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 20 H -0.24 -8.34 7.11 99.48 0.71 -7.63 16 21 C -0.08 -3.79 11.49 83.37 0.96 -2.83 16 22 H 0.11 1.89 8.06 -2.91 -0.02 1.87 16 23 H 0.12 1.94 5.69 -2.91 -0.02 1.92 16 24 H 0.10 2.65 8.06 -2.91 -0.02 2.62 16 25 H 0.08 1.13 7.55 -2.39 -0.02 1.11 16 26 H 0.10 1.15 7.50 -2.39 -0.02 1.14 16 27 H 0.05 1.06 7.50 -2.38 -0.02 1.04 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.16 7.58 -2.38 -0.02 1.14 16 31 H 0.42 10.58 7.66 -92.71 -0.71 9.87 16 32 H 0.16 9.38 5.92 -2.91 -0.02 9.36 16 33 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.19 6.86 8.06 -2.91 -0.02 6.84 16 Total: -1.00 -77.76 290.59 5.99 -71.77 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.40 Total: 33.31 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 6.23 Total: -17.74 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -2.64 Total: -101.45 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.04 Total: -26.80 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -77.76 5.99 -71.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631316728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.562 kcal (2) G-P(sol) polarization free energy of solvation -77.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds