Wall clock time and date at job start Thu Apr 9 2020 12:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 F 1.39900 * 109.47449 * 2 1 4 4 F 1.39901 * 109.47154 * 240.00197 * 2 1 3 5 5 C 1.52999 * 109.47207 * 120.00189 * 2 1 3 6 6 C 1.53007 * 109.47275 * 180.02562 * 5 2 1 7 7 C 1.52994 * 109.47046 * 179.97438 * 6 5 2 8 8 N 1.46904 * 109.47076 * 179.97438 * 7 6 5 9 9 C 1.47960 * 110.99975 * 190.00073 * 8 7 6 10 10 C 1.53940 * 86.18020 * 222.41827 * 9 8 7 11 11 O 1.42900 * 113.73337 * 269.26005 * 10 9 8 12 12 C 1.50694 * 113.73364 * 138.08016 * 10 9 8 13 13 H 1.08000 * 120.00563 * 1.89939 * 12 10 9 14 14 C 1.37885 * 119.99902 * 181.90102 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.48189 * 111.06803 * 90.56485 * 8 7 6 21 21 H 1.09005 * 109.47179 * 299.99742 * 1 2 3 22 22 H 1.09001 * 109.47330 * 60.00099 * 1 2 3 23 23 H 1.08999 * 109.47667 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47401 * 59.99937 * 5 2 1 25 25 H 1.09008 * 109.47094 * 299.99592 * 5 2 1 26 26 H 1.08994 * 109.47018 * 59.99628 * 6 5 2 27 27 H 1.08995 * 109.46394 * 299.99713 * 6 5 2 28 28 H 1.09003 * 109.47110 * 59.99953 * 7 6 5 29 29 H 1.09005 * 109.47409 * 300.00082 * 7 6 5 30 30 H 1.09000 * 113.75922 * 108.10132 * 9 8 7 31 31 H 1.08996 * 113.85941 * 336.74802 * 9 8 7 32 32 H 0.96699 * 113.99865 * 178.10203 * 11 10 9 33 33 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 34 34 H 1.08996 * 113.76245 * 23.24297 * 20 8 7 35 35 H 1.08999 * 113.82580 * 251.80952 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0399 -0.7213 1.2492 6 6 3.5700 -0.7207 1.2495 7 6 4.0800 -1.4414 2.4990 8 7 5.5490 -1.4415 2.4991 9 6 6.0792 -2.3289 3.5576 10 6 7.1011 -1.2124 3.8385 11 8 8.3134 -1.3414 3.0931 12 6 7.3374 -0.9616 5.3055 13 1 6.8317 -1.5648 6.0449 14 6 8.1994 0.0381 5.7039 15 7 8.8157 0.7724 4.8035 16 14 8.4919 0.3495 7.5224 17 1 9.4540 1.4690 7.6844 18 1 7.2066 0.7021 8.1772 19 1 9.0481 -0.8755 8.1511 20 6 6.0817 -0.2505 3.2018 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6767 -1.7489 1.2492 25 1 1.6766 -0.2074 2.1393 26 1 3.9329 0.3070 1.2497 27 1 3.9336 -1.2343 0.3596 28 1 3.7170 -2.4693 2.4992 29 1 3.7162 -0.9275 3.3889 30 1 6.5260 -3.2476 3.1774 31 1 5.3822 -2.5027 4.3773 32 1 8.9464 -0.6263 3.2448 33 1 9.4219 1.4760 5.0838 34 1 5.3842 0.1862 3.9165 35 1 6.5305 0.4884 2.5379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645388040.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:02 Heat of formation + Delta-G solvation = -132.943643 kcal Electronic energy + Delta-G solvation = -18596.796948 eV Core-core repulsion = 15266.092540 eV Total energy + Delta-G solvation = -3330.704408 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.96081 -46.94023 -38.96825 -35.29541 -33.80663 -32.07014 -31.33046 -28.07901 -25.86321 -25.05923 -23.34320 -21.46806 -20.71496 -18.59022 -17.65448 -17.23912 -16.46170 -16.24916 -15.31708 -14.97788 -14.85446 -14.04216 -13.93910 -13.50184 -13.44584 -13.28297 -13.14932 -12.79396 -12.41285 -12.33099 -12.02294 -11.81754 -11.49242 -11.24084 -11.22801 -10.99103 -10.90334 -10.50993 -10.38020 -10.14808 -9.93675 -9.25925 -8.62547 -8.19904 -7.77297 -6.24404 -4.34641 3.21319 3.26999 3.29156 3.70860 4.08803 4.22589 4.27379 4.32186 4.81402 4.99143 4.99979 5.18174 5.32572 5.40611 5.52378 5.57107 5.63458 5.74140 5.96826 6.03920 6.07807 6.22790 6.34449 6.48775 6.54674 6.71344 7.07461 7.23228 7.38327 7.77112 8.00555 8.04313 8.66845 9.35316 9.64545 10.81477 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.037814 B = 0.004463 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.294242 B = 6271.665795 C = 6452.088277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.286 3.714 3 F -0.201 7.201 4 F -0.202 7.202 5 C -0.159 4.159 6 C -0.114 4.114 7 C 0.023 3.977 8 N -0.481 5.481 9 C 0.009 3.991 10 C 0.243 3.757 11 O -0.572 6.572 12 C -0.540 4.540 13 H 0.064 0.936 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.903 3.097 17 H -0.285 1.285 18 H -0.276 1.276 19 H -0.274 1.274 20 C -0.012 4.012 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.388 0.612 33 H 0.271 0.729 34 H 0.059 0.941 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.804 -1.105 -5.662 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.249 3.751 3 F -0.182 7.182 4 F -0.183 7.183 5 C -0.198 4.198 6 C -0.152 4.152 7 C -0.106 4.106 8 N -0.204 5.204 9 C -0.120 4.120 10 C 0.202 3.798 11 O -0.383 6.383 12 C -0.578 4.578 13 H 0.082 0.918 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.730 3.270 17 H -0.210 1.210 18 H -0.201 1.201 19 H -0.200 1.200 20 C -0.141 4.141 21 H 0.107 0.893 22 H 0.097 0.903 23 H 0.106 0.894 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.242 0.758 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.778 -1.590 -6.619 16.271 hybrid contribution 0.051 1.032 1.866 2.133 sum -14.727 -0.558 -4.753 15.485 Atomic orbital electron populations 1.22769 0.91996 1.05236 1.05141 1.21153 0.93311 0.75940 0.84652 1.93013 1.90587 1.37728 1.96894 1.93005 1.90606 1.80980 1.53702 1.22634 0.99125 1.02066 0.95964 1.21436 0.91623 1.02274 0.99834 1.22568 0.92317 0.99460 0.96265 1.68503 1.05705 1.06873 1.39300 1.24096 0.97150 0.98284 0.92431 1.19754 0.82315 0.88632 0.89097 1.86043 1.29490 1.53482 1.69238 1.21618 1.27017 1.17288 0.91884 0.91777 1.25057 0.94732 0.94846 0.98429 1.69424 1.29273 1.21403 1.33615 0.86484 0.78171 0.77957 0.84401 1.21002 1.20111 1.19959 1.24781 0.99051 0.94431 0.95806 0.89329 0.90268 0.89361 0.88996 0.89024 0.91206 0.90689 0.91982 0.94347 0.90744 0.91851 0.75846 0.91876 0.92285 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 9.38 37.15 0.35 -1.13 16 2 C 0.29 3.27 2.11 -26.74 -0.06 3.21 16 3 F -0.20 -2.79 16.54 2.25 0.04 -2.75 16 4 F -0.20 -2.71 16.54 2.25 0.04 -2.67 16 5 C -0.16 -1.78 4.80 -26.73 -0.13 -1.91 16 6 C -0.11 -1.72 5.28 -26.73 -0.14 -1.86 16 7 C 0.02 0.39 4.80 -3.83 -0.02 0.37 16 8 N -0.48 -10.27 6.16 -238.02 -1.47 -11.74 16 9 C 0.01 0.20 7.34 -2.76 -0.02 0.18 16 10 C 0.24 6.27 1.40 -90.83 -0.13 6.14 16 11 O -0.57 -15.74 13.48 -35.23 -0.48 -16.21 16 12 C -0.54 -14.53 8.61 -34.44 -0.30 -14.82 16 13 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 14 C 0.07 1.90 5.40 -17.82 -0.10 1.80 16 15 N -0.90 -24.29 11.20 55.43 0.62 -23.67 16 16 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 C -0.01 -0.28 7.37 -2.63 -0.02 -0.29 16 21 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 26 H 0.07 1.17 7.80 -51.93 -0.41 0.77 16 27 H 0.07 1.21 7.80 -51.93 -0.41 0.80 16 28 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 29 H 0.04 0.64 7.39 -51.93 -0.38 0.26 16 30 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 31 H 0.06 1.30 7.88 -51.93 -0.41 0.89 16 32 H 0.39 10.79 6.60 45.56 0.30 11.09 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.06 1.37 7.44 -51.93 -0.39 0.99 16 35 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 297.37 15.07 4.48 4.48 Total: -1.00 -28.90 297.37 -6.95 -35.85 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -4.61 Total: 9.60 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.56 Total: -8.32 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: -0.85 Total: -35.40 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.48 Total: -16.21 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.07 Total: -5.42 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.90 -6.95 -35.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645388040.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.090 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds