Wall clock time and date at job start Thu Apr 9 2020 12:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 F 1.39900 * 109.47449 * 2 1 4 4 F 1.39901 * 109.47154 * 240.00197 * 2 1 3 5 5 C 1.52999 * 109.47207 * 120.00189 * 2 1 3 6 6 C 1.53007 * 109.47275 * 180.02562 * 5 2 1 7 7 C 1.52994 * 109.47046 * 179.97438 * 6 5 2 8 8 N 1.46904 * 109.47076 * 179.97438 * 7 6 5 9 9 C 1.47960 * 110.99975 * 190.00073 * 8 7 6 10 10 C 1.53940 * 86.18020 * 222.41827 * 9 8 7 11 11 O 1.42900 * 113.73337 * 269.26005 * 10 9 8 12 12 C 1.50694 * 113.73364 * 138.08016 * 10 9 8 13 13 H 1.08000 * 120.00563 * 1.89939 * 12 10 9 14 14 C 1.37885 * 119.99902 * 181.90102 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.48189 * 111.06803 * 90.56485 * 8 7 6 21 21 H 1.09005 * 109.47179 * 299.99742 * 1 2 3 22 22 H 1.09001 * 109.47330 * 60.00099 * 1 2 3 23 23 H 1.08999 * 109.47667 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47401 * 59.99937 * 5 2 1 25 25 H 1.09008 * 109.47094 * 299.99592 * 5 2 1 26 26 H 1.08994 * 109.47018 * 59.99628 * 6 5 2 27 27 H 1.08995 * 109.46394 * 299.99713 * 6 5 2 28 28 H 1.09003 * 109.47110 * 59.99953 * 7 6 5 29 29 H 1.09005 * 109.47409 * 300.00082 * 7 6 5 30 30 H 1.09000 * 113.75922 * 108.10132 * 9 8 7 31 31 H 1.08996 * 113.85941 * 336.74802 * 9 8 7 32 32 H 0.96699 * 113.99865 * 178.10203 * 11 10 9 33 33 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 34 34 H 1.08996 * 113.76245 * 23.24297 * 20 8 7 35 35 H 1.08999 * 113.82580 * 251.80952 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0399 -0.7213 1.2492 6 6 3.5700 -0.7207 1.2495 7 6 4.0800 -1.4414 2.4990 8 7 5.5490 -1.4415 2.4991 9 6 6.0792 -2.3289 3.5576 10 6 7.1011 -1.2124 3.8385 11 8 8.3134 -1.3414 3.0931 12 6 7.3374 -0.9616 5.3055 13 1 6.8317 -1.5648 6.0449 14 6 8.1994 0.0381 5.7039 15 7 8.8157 0.7724 4.8035 16 14 8.4919 0.3495 7.5224 17 1 9.4540 1.4690 7.6844 18 1 7.2066 0.7021 8.1772 19 1 9.0481 -0.8755 8.1511 20 6 6.0817 -0.2505 3.2018 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6767 -1.7489 1.2492 25 1 1.6766 -0.2074 2.1393 26 1 3.9329 0.3070 1.2497 27 1 3.9336 -1.2343 0.3596 28 1 3.7170 -2.4693 2.4992 29 1 3.7162 -0.9275 3.3889 30 1 6.5260 -3.2476 3.1774 31 1 5.3822 -2.5027 4.3773 32 1 8.9464 -0.6263 3.2448 33 1 9.4219 1.4760 5.0838 34 1 5.3842 0.1862 3.9165 35 1 6.5305 0.4884 2.5379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645388040.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:02 Heat of formation + Delta-G solvation = -153.880183 kcal Electronic energy + Delta-G solvation = -18597.704825 eV Core-core repulsion = 15266.092540 eV Total energy + Delta-G solvation = -3331.612284 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.91648 -47.92181 -40.75442 -36.79981 -35.31789 -34.12770 -32.37764 -29.56979 -27.49010 -26.88926 -24.77998 -22.51951 -22.04309 -20.49681 -19.20137 -18.58811 -17.52803 -17.22198 -17.10977 -16.64412 -16.44191 -15.73476 -15.40059 -14.94201 -14.69030 -14.29877 -14.22369 -13.89219 -13.78710 -13.42892 -13.33569 -13.23082 -13.12103 -12.84239 -12.62274 -12.50526 -12.39270 -12.23163 -12.12333 -11.55596 -11.46613 -11.13073 -10.62631 -10.13449 -9.56411 -8.24271 -6.43016 1.42826 1.44429 1.52635 2.37293 2.86632 2.96615 3.08252 3.30124 3.48648 3.52344 3.95645 4.00649 4.17403 4.25700 4.35838 4.45381 4.53700 4.57830 4.64926 4.67757 4.78652 4.81245 4.91089 5.04023 5.10032 5.13136 5.26061 5.40800 5.55061 5.73753 5.98650 6.35165 6.62531 7.30236 7.49718 8.80512 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.037814 B = 0.004463 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.294242 B = 6271.665795 C = 6452.088277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.272 3.728 3 F -0.221 7.221 4 F -0.217 7.217 5 C -0.152 4.152 6 C -0.109 4.109 7 C 0.023 3.977 8 N -0.490 5.490 9 C 0.019 3.981 10 C 0.214 3.786 11 O -0.585 6.585 12 C -0.563 4.563 13 H 0.066 0.934 14 C 0.027 3.973 15 N -0.920 5.920 16 Si 0.968 3.032 17 H -0.282 1.282 18 H -0.268 1.268 19 H -0.271 1.271 20 C 0.000 4.000 21 H 0.104 0.896 22 H 0.081 0.919 23 H 0.108 0.892 24 H 0.118 0.882 25 H 0.109 0.891 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.381 0.619 33 H 0.273 0.727 34 H 0.060 0.940 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.787 -1.711 -4.674 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.236 3.764 3 F -0.202 7.202 4 F -0.199 7.199 5 C -0.190 4.190 6 C -0.147 4.147 7 C -0.105 4.105 8 N -0.213 5.213 9 C -0.109 4.109 10 C 0.173 3.827 11 O -0.396 6.396 12 C -0.601 4.601 13 H 0.084 0.916 14 C -0.173 4.173 15 N -0.561 5.561 16 Si 0.793 3.207 17 H -0.207 1.207 18 H -0.193 1.193 19 H -0.197 1.197 20 C -0.130 4.130 21 H 0.123 0.877 22 H 0.100 0.900 23 H 0.127 0.873 24 H 0.136 0.864 25 H 0.127 0.873 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.234 0.766 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.781 -2.208 -5.642 17.841 hybrid contribution 0.680 1.204 1.509 2.047 sum -16.101 -1.004 -4.133 16.653 Atomic orbital electron populations 1.22778 0.88518 1.06925 1.06140 1.21700 0.95728 0.74876 0.84081 1.92976 1.91085 1.39193 1.96934 1.92974 1.91059 1.81203 1.54625 1.22632 0.95761 1.03976 0.96641 1.21336 0.94773 1.00227 0.98372 1.22662 0.89323 1.01297 0.97265 1.68414 1.09020 1.05193 1.38652 1.24035 0.96344 0.97344 0.93193 1.20190 0.82334 0.91283 0.88888 1.86026 1.30338 1.53382 1.69811 1.21903 1.27746 1.17800 0.92628 0.91551 1.25840 0.94369 0.94486 1.02639 1.69518 1.29500 1.21641 1.35397 0.85458 0.78237 0.77781 0.79244 1.20676 1.19286 1.19651 1.24512 0.98770 0.94368 0.95319 0.87695 0.89989 0.87323 0.86387 0.87290 0.93679 0.92093 0.89546 0.93691 0.90668 0.89986 0.76603 0.91719 0.92173 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.29 9.38 71.98 0.68 -1.61 16 2 C 0.27 5.75 2.11 30.59 0.06 5.81 16 3 F -0.22 -6.00 16.54 44.97 0.74 -5.25 16 4 F -0.22 -5.62 16.54 44.97 0.74 -4.88 16 5 C -0.15 -3.00 4.80 30.60 0.15 -2.86 16 6 C -0.11 -3.19 5.28 30.59 0.16 -3.03 16 7 C 0.02 0.74 4.80 86.30 0.41 1.15 16 8 N -0.49 -20.64 6.16 -910.15 -5.61 -26.25 16 9 C 0.02 0.84 7.34 86.41 0.63 1.48 16 10 C 0.21 11.08 1.40 -10.89 -0.02 11.07 16 11 O -0.59 -32.95 13.48 -148.98 -2.01 -34.96 16 12 C -0.56 -30.22 8.61 25.60 0.22 -30.00 16 13 H 0.07 3.43 7.81 -2.91 -0.02 3.41 16 14 C 0.03 1.40 5.40 84.66 0.46 1.86 16 15 N -0.92 -50.37 11.20 21.45 0.24 -50.13 16 16 Si 0.97 41.52 29.54 68.60 2.03 43.55 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 C 0.00 -0.01 7.37 86.37 0.64 0.63 16 21 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 22 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.04 1.52 7.80 -2.39 -0.02 1.50 16 27 H 0.06 1.94 7.80 -2.39 -0.02 1.92 16 28 H 0.09 2.37 8.08 -2.39 -0.02 2.35 16 29 H 0.04 1.40 7.39 -2.38 -0.02 1.38 16 30 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.08 3.21 7.88 -2.39 -0.02 3.19 16 32 H 0.38 21.92 6.60 -74.06 -0.49 21.44 16 33 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 34 H 0.06 2.81 7.44 -2.39 -0.02 2.79 16 35 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -62.44 297.37 0.13 -62.31 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.59 Total: 31.11 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 3.40 Total: -15.50 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -5.36 Total: -76.37 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -2.01 Total: -34.96 kcal Atomic # 9 Polarization: -11.62 SS G_CDS: 1.49 Total: -10.13 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -62.44 0.13 -62.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645388040.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.568 kcal (2) G-P(sol) polarization free energy of solvation -62.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds