Wall clock time and date at job start Thu Apr 9 2020 12:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34663 * 126.59467 * 2 1 4 4 N 1.34126 * 108.02560 * 180.02562 * 3 2 1 5 5 C 1.30500 * 109.25200 * 359.97438 * 4 3 2 6 6 C 1.50701 * 125.64806 * 180.02562 * 5 4 3 7 7 N 1.46502 * 112.85035 * 125.09961 * 6 5 4 8 8 C 1.34776 * 119.99474 * 297.29977 * 7 6 5 9 9 O 1.21680 * 120.00501 * 354.93256 * 8 7 6 10 10 C 1.46384 * 119.99559 * 174.66153 * 8 7 6 11 11 H 1.07998 * 120.00061 * 0.27549 * 10 8 7 12 12 C 1.40051 * 119.99772 * 180.27267 * 10 8 7 13 13 N 1.30672 * 120.00020 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99811 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47039 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46795 * 120.00399 * 14 12 10 17 17 H 1.48497 * 109.46927 * 239.99847 * 14 12 10 18 18 C 1.53783 * 113.61531 * 256.29298 * 6 5 4 19 19 C 1.54046 * 86.98434 * 140.02320 * 18 6 5 20 20 C 1.53781 * 113.61583 * 353.90271 * 6 5 4 21 21 N 1.35044 * 108.70424 * 0.26457 * 5 4 3 22 22 H 0.97000 * 126.40280 * 179.73705 * 21 5 4 23 23 H 1.09007 * 109.46863 * 89.97622 * 1 2 3 24 24 H 1.08999 * 109.47355 * 209.97289 * 1 2 3 25 25 H 1.08997 * 109.46653 * 329.97996 * 1 2 3 26 26 H 1.08000 * 125.98864 * 359.97438 * 3 2 1 27 27 H 0.97003 * 120.00195 * 117.29701 * 7 6 5 28 28 H 0.96994 * 119.99784 * 179.97438 * 13 12 10 29 29 H 1.08998 * 113.61318 * 254.61631 * 18 6 5 30 30 H 1.08997 * 113.61616 * 25.51492 * 18 6 5 31 31 H 1.09006 * 113.61553 * 220.02028 * 19 18 6 32 32 H 1.09001 * 113.69510 * 89.13218 * 19 18 6 33 33 H 1.08994 * 113.61203 * 334.47991 * 20 6 5 34 34 H 1.08996 * 113.61620 * 105.38645 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5813 0.6541 -0.0006 5 6 3.5968 -0.6509 -0.0004 6 6 4.8318 -1.5145 -0.0003 7 7 4.8532 -2.4765 1.1044 8 6 4.8766 -2.0386 2.3788 9 8 4.9731 -0.8482 2.6115 10 6 4.7801 -2.9947 3.4830 11 1 4.6945 -4.0513 3.2765 12 6 4.7987 -2.5393 4.8073 13 7 4.9017 -1.2608 5.0571 14 14 4.6747 -3.7593 6.2164 15 1 4.5674 -5.1363 5.6709 16 1 5.8875 -3.6575 7.0674 17 1 3.4713 -3.4539 7.0311 18 6 5.1453 -2.1414 -1.3691 19 6 6.6283 -1.8487 -1.0725 20 6 6.1396 -0.7194 -0.1502 21 7 2.3230 -1.0991 -0.0056 22 1 2.0391 -2.0267 -0.0102 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3632 0.8898 0.5141 26 1 1.9866 2.1117 -0.0004 27 1 4.8505 -3.4286 0.9186 28 1 4.9142 -0.9454 5.9742 29 1 4.9115 -3.2044 -1.4263 30 1 4.7480 -1.5738 -2.2106 31 1 7.1853 -1.4939 -1.9398 32 1 7.1367 -2.6551 -0.5440 33 1 6.0136 0.2362 -0.6590 34 1 6.7080 -0.6353 0.7760 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650881039.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:04 Heat of formation + Delta-G solvation = 37.064430 kcal Electronic energy + Delta-G solvation = -18533.038119 eV Core-core repulsion = 15660.395001 eV Total energy + Delta-G solvation = -2872.643118 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.56875 -38.84774 -36.15870 -32.56488 -32.22644 -31.59083 -30.97189 -27.10826 -26.03586 -25.27403 -23.71883 -20.69438 -20.47690 -20.16025 -18.21447 -17.22778 -16.93744 -15.32237 -15.17153 -14.77451 -14.45868 -13.98506 -13.61864 -13.18408 -12.90904 -12.64371 -12.41445 -12.29954 -12.21064 -11.84734 -11.34318 -11.17056 -11.05833 -10.51301 -10.46046 -10.31386 -10.18563 -9.91828 -9.36633 -9.27474 -8.87642 -7.79825 -7.62690 -7.43203 -6.18131 -4.65857 2.56070 3.10780 3.18868 3.22791 3.62159 3.74200 4.07737 4.51051 4.60838 4.94688 5.00380 5.17516 5.28117 5.36927 5.43289 5.65924 5.69100 5.82969 5.90648 5.95558 5.99835 6.15045 6.18072 6.21407 6.59348 6.78142 6.84549 6.91269 7.33734 7.41514 7.83018 7.95083 8.04176 8.28400 8.77902 9.01163 9.49043 10.60008 10.79519 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019873 B = 0.008137 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.579404 B = 3440.400315 C = 4254.034612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.047 4.047 3 C -0.027 4.027 4 N -0.475 5.475 5 C 0.247 3.753 6 C 0.241 3.759 7 N -0.748 5.748 8 C 0.552 3.448 9 O -0.552 6.552 10 C -0.547 4.547 11 H 0.066 0.934 12 C 0.088 3.912 13 N -0.763 5.763 14 Si 0.905 3.095 15 H -0.265 1.265 16 H -0.276 1.276 17 H -0.277 1.277 18 C -0.136 4.136 19 C -0.138 4.138 20 C -0.115 4.115 21 N -0.559 5.559 22 H 0.412 0.588 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.161 0.839 27 H 0.382 0.618 28 H 0.267 0.733 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.782 -2.942 -11.085 12.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.163 4.163 3 C -0.176 4.176 4 N -0.193 5.193 5 C -0.019 4.019 6 C 0.151 3.849 7 N -0.405 5.405 8 C 0.355 3.645 9 O -0.432 6.432 10 C -0.584 4.584 11 H 0.084 0.916 12 C -0.132 4.132 13 N -0.392 5.392 14 Si 0.730 3.270 15 H -0.189 1.189 16 H -0.201 1.201 17 H -0.203 1.203 18 C -0.174 4.174 19 C -0.176 4.176 20 C -0.155 4.155 21 N -0.160 5.160 22 H 0.248 0.752 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.178 0.822 27 H 0.214 0.786 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.019 -1.320 -10.736 11.539 hybrid contribution -1.104 -2.000 0.859 2.441 sum -5.123 -3.320 -9.876 11.611 Atomic orbital electron populations 1.20111 0.87861 1.02997 1.01792 1.21113 0.94022 0.87600 1.13551 1.21988 0.88869 0.98040 1.08676 1.70145 1.21637 1.08343 1.19195 1.23349 0.85078 0.90889 1.02548 1.19075 0.88312 0.89472 0.88076 1.46194 1.82728 1.06562 1.04972 1.18275 0.76759 0.89310 0.80124 1.90681 1.52557 1.17170 1.82747 1.20881 1.54264 0.93445 0.89814 0.91591 1.25686 0.92802 0.95170 0.99579 1.70033 1.35016 1.13904 1.20247 0.86357 0.78256 0.81240 0.81137 1.18862 1.20111 1.20274 1.23290 0.97646 1.00502 0.96007 1.22860 0.95116 0.99887 0.99723 1.23015 0.95065 0.97132 1.00255 1.43009 1.07129 1.08812 1.57085 0.75192 0.91672 0.92142 0.90393 0.82175 0.78562 0.92167 0.91207 0.89555 0.91606 0.90018 0.89237 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.44 36.01 0.38 -0.46 16 2 C -0.05 -0.81 7.24 -81.60 -0.59 -1.40 16 3 C -0.03 -0.52 11.79 -17.82 -0.21 -0.73 16 4 N -0.47 -10.63 10.48 -10.82 -0.11 -10.75 16 5 C 0.25 5.16 6.27 -155.41 -0.97 4.19 16 6 C 0.24 4.70 1.01 -132.16 -0.13 4.57 16 7 N -0.75 -16.12 5.15 -49.31 -0.25 -16.37 16 8 C 0.55 15.33 7.30 -12.98 -0.09 15.24 16 9 O -0.55 -17.70 13.69 5.21 0.07 -17.63 16 10 C -0.55 -15.24 9.54 -35.63 -0.34 -15.58 16 11 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 12 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 13 N -0.76 -23.07 11.83 55.55 0.66 -22.41 16 14 Si 0.91 20.17 29.56 -169.99 -5.02 15.15 16 15 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 C -0.14 -1.98 7.37 -25.78 -0.19 -2.17 16 19 C -0.14 -2.07 8.00 -25.78 -0.21 -2.28 16 20 C -0.12 -2.26 6.82 -25.92 -0.18 -2.44 16 21 N -0.56 -10.06 6.15 -6.54 -0.04 -10.10 16 22 H 0.41 6.32 8.96 -40.82 -0.37 5.96 16 23 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.16 2.61 8.06 -52.49 -0.42 2.18 16 27 H 0.38 7.08 8.63 -40.82 -0.35 6.73 16 28 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 29 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 30 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.75 7.68 -51.93 -0.40 1.35 16 34 H 0.08 1.88 7.47 -51.93 -0.39 1.50 16 LS Contribution 293.29 15.07 4.42 4.42 Total: -1.00 -36.27 293.29 -7.35 -43.61 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -4.43 Total: 12.78 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -2.64 Total: 1.30 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.25 Total: -59.63 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: 0.07 Total: -17.63 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -36.27 -7.35 -43.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650881039.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.679 kcal (2) G-P(sol) polarization free energy of solvation -36.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds