Wall clock time and date at job start Thu Apr 9 2020 12:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34663 * 126.59467 * 2 1 4 4 N 1.34126 * 108.02560 * 180.02562 * 3 2 1 5 5 C 1.30500 * 109.25200 * 359.97438 * 4 3 2 6 6 C 1.50701 * 125.64806 * 180.02562 * 5 4 3 7 7 N 1.46502 * 112.85035 * 125.09961 * 6 5 4 8 8 C 1.34776 * 119.99474 * 297.29977 * 7 6 5 9 9 O 1.21680 * 120.00501 * 354.93256 * 8 7 6 10 10 C 1.46384 * 119.99559 * 174.66153 * 8 7 6 11 11 H 1.07998 * 120.00061 * 0.27549 * 10 8 7 12 12 C 1.40051 * 119.99772 * 180.27267 * 10 8 7 13 13 N 1.30672 * 120.00020 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99811 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47039 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46795 * 120.00399 * 14 12 10 17 17 H 1.48497 * 109.46927 * 239.99847 * 14 12 10 18 18 C 1.53783 * 113.61531 * 256.29298 * 6 5 4 19 19 C 1.54046 * 86.98434 * 140.02320 * 18 6 5 20 20 C 1.53781 * 113.61583 * 353.90271 * 6 5 4 21 21 N 1.35044 * 108.70424 * 0.26457 * 5 4 3 22 22 H 0.97000 * 126.40280 * 179.73705 * 21 5 4 23 23 H 1.09007 * 109.46863 * 89.97622 * 1 2 3 24 24 H 1.08999 * 109.47355 * 209.97289 * 1 2 3 25 25 H 1.08997 * 109.46653 * 329.97996 * 1 2 3 26 26 H 1.08000 * 125.98864 * 359.97438 * 3 2 1 27 27 H 0.97003 * 120.00195 * 117.29701 * 7 6 5 28 28 H 0.96994 * 119.99784 * 179.97438 * 13 12 10 29 29 H 1.08998 * 113.61318 * 254.61631 * 18 6 5 30 30 H 1.08997 * 113.61616 * 25.51492 * 18 6 5 31 31 H 1.09006 * 113.61553 * 220.02028 * 19 18 6 32 32 H 1.09001 * 113.69510 * 89.13218 * 19 18 6 33 33 H 1.08994 * 113.61203 * 334.47991 * 20 6 5 34 34 H 1.08996 * 113.61620 * 105.38645 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5813 0.6541 -0.0006 5 6 3.5968 -0.6509 -0.0004 6 6 4.8318 -1.5145 -0.0003 7 7 4.8532 -2.4765 1.1044 8 6 4.8766 -2.0386 2.3788 9 8 4.9731 -0.8482 2.6115 10 6 4.7801 -2.9947 3.4830 11 1 4.6945 -4.0513 3.2765 12 6 4.7987 -2.5393 4.8073 13 7 4.9017 -1.2608 5.0571 14 14 4.6747 -3.7593 6.2164 15 1 4.5674 -5.1363 5.6709 16 1 5.8875 -3.6575 7.0674 17 1 3.4713 -3.4539 7.0311 18 6 5.1453 -2.1414 -1.3691 19 6 6.6283 -1.8487 -1.0725 20 6 6.1396 -0.7194 -0.1502 21 7 2.3230 -1.0991 -0.0056 22 1 2.0391 -2.0267 -0.0102 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3632 0.8898 0.5141 26 1 1.9866 2.1117 -0.0004 27 1 4.8505 -3.4286 0.9186 28 1 4.9142 -0.9454 5.9742 29 1 4.9115 -3.2044 -1.4263 30 1 4.7480 -1.5738 -2.2106 31 1 7.1853 -1.4939 -1.9398 32 1 7.1367 -2.6551 -0.5440 33 1 6.0136 0.2362 -0.6590 34 1 6.7080 -0.6353 0.7760 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650881039.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:04 Heat of formation + Delta-G solvation = 9.433666 kcal Electronic energy + Delta-G solvation = -18534.236279 eV Core-core repulsion = 15660.395001 eV Total energy + Delta-G solvation = -2873.841278 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.02175 -40.42117 -38.11704 -34.65722 -33.71137 -33.33636 -32.39241 -28.76862 -27.75792 -26.66487 -25.17052 -22.39502 -21.99427 -21.70439 -19.76883 -19.17879 -18.45818 -17.39470 -16.64646 -16.22939 -15.85177 -15.77565 -15.11048 -14.71196 -14.35736 -14.28883 -14.11202 -13.57993 -13.32466 -13.22414 -13.08165 -12.87644 -12.73014 -12.55412 -12.00531 -11.85607 -11.69540 -11.34759 -10.95820 -10.87690 -10.77855 -9.77833 -9.55349 -9.02085 -8.26724 -6.84899 1.14372 1.37070 1.37700 1.54846 2.17307 2.23316 2.30438 2.50158 2.96928 3.42753 3.66761 3.79007 3.83453 4.05233 4.11642 4.30957 4.37669 4.58503 4.75161 4.77343 4.82652 4.84545 5.02869 5.06431 5.22104 5.24046 5.31468 5.40551 5.45431 5.86707 5.92209 6.24144 6.28473 6.58673 6.87781 7.30401 7.58174 8.54163 8.72315 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019873 B = 0.008137 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.579404 B = 3440.400315 C = 4254.034612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.031 4.031 3 C -0.068 4.068 4 N -0.519 5.519 5 C 0.220 3.780 6 C 0.224 3.776 7 N -0.732 5.732 8 C 0.542 3.458 9 O -0.605 6.605 10 C -0.573 4.573 11 H 0.088 0.912 12 C 0.028 3.972 13 N -0.822 5.822 14 Si 0.994 3.006 15 H -0.244 1.244 16 H -0.271 1.271 17 H -0.273 1.273 18 C -0.109 4.109 19 C -0.120 4.120 20 C -0.128 4.128 21 N -0.554 5.554 22 H 0.423 0.577 23 H 0.094 0.906 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.178 0.822 27 H 0.399 0.601 28 H 0.271 0.729 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.113 -5.573 -12.123 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.147 4.147 3 C -0.215 4.215 4 N -0.238 5.238 5 C -0.046 4.046 6 C 0.134 3.866 7 N -0.388 5.388 8 C 0.345 3.655 9 O -0.489 6.489 10 C -0.609 4.609 11 H 0.106 0.894 12 C -0.187 4.187 13 N -0.452 5.452 14 Si 0.814 3.186 15 H -0.167 1.167 16 H -0.196 1.196 17 H -0.198 1.198 18 C -0.147 4.147 19 C -0.157 4.157 20 C -0.168 4.168 21 N -0.157 5.157 22 H 0.262 0.738 23 H 0.113 0.887 24 H 0.089 0.911 25 H 0.108 0.892 26 H 0.195 0.805 27 H 0.234 0.766 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.358 -4.007 -11.836 13.596 hybrid contribution -0.718 -1.097 1.131 1.732 sum -6.076 -5.104 -10.706 13.326 Atomic orbital electron populations 1.20293 0.83975 1.04098 1.04022 1.21879 0.96179 0.86533 1.10132 1.22473 0.88532 0.99824 1.10691 1.70054 1.23706 1.09736 1.20312 1.23490 0.86349 0.90835 1.03886 1.19450 0.87771 0.89611 0.89765 1.45680 1.81223 1.07832 1.04025 1.18557 0.76130 0.88617 0.82174 1.90647 1.54740 1.19302 1.84213 1.21446 1.54352 0.94544 0.90602 0.89419 1.26938 0.91486 0.97235 1.03014 1.70227 1.36798 1.16939 1.21204 0.85024 0.78296 0.78788 0.76499 1.16664 1.19586 1.19776 1.23210 0.96408 1.02186 0.92940 1.22804 0.96083 0.97513 0.99279 1.23005 0.95752 0.98821 0.99186 1.43030 1.06499 1.09715 1.56473 0.73787 0.88733 0.91090 0.89191 0.80506 0.76597 0.91929 0.88028 0.88127 0.88656 0.89747 0.90060 0.95073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 10.44 71.24 0.74 -0.67 16 2 C -0.03 -1.02 7.24 40.95 0.30 -0.72 16 3 C -0.07 -2.65 11.79 83.52 0.98 -1.66 16 4 N -0.52 -24.04 10.48 -188.14 -1.97 -26.01 16 5 C 0.22 9.29 6.27 138.13 0.87 10.16 16 6 C 0.22 8.72 1.01 3.38 0.00 8.72 16 7 N -0.73 -31.50 5.15 -428.15 -2.20 -33.70 16 8 C 0.54 30.91 7.30 86.36 0.63 31.54 16 9 O -0.61 -40.79 13.69 -4.29 -0.06 -40.85 16 10 C -0.57 -32.05 9.54 24.83 0.24 -31.81 16 11 H 0.09 4.35 7.85 -2.91 -0.02 4.33 16 12 C 0.03 1.57 5.50 85.31 0.47 2.04 16 13 N -0.82 -51.41 11.83 21.84 0.26 -51.15 16 14 Si 0.99 41.28 29.56 68.60 2.03 43.31 16 15 H -0.24 -9.20 7.11 99.48 0.71 -8.49 16 16 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 18 C -0.11 -2.88 7.37 31.21 0.23 -2.65 16 19 C -0.12 -3.36 8.00 31.21 0.25 -3.11 16 20 C -0.13 -5.21 6.82 31.12 0.21 -4.99 16 21 N -0.55 -19.49 6.15 -174.60 -1.07 -20.57 16 22 H 0.42 12.32 8.96 -92.71 -0.83 11.49 16 23 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.18 5.88 8.06 -2.91 -0.02 5.86 16 27 H 0.40 14.20 8.63 -92.71 -0.80 13.40 16 28 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16 29 H 0.10 2.08 8.09 -2.39 -0.02 2.06 16 30 H 0.10 2.44 8.09 -2.39 -0.02 2.42 16 31 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.08 3.36 7.68 -2.39 -0.02 3.34 16 34 H 0.03 1.53 7.47 -2.39 -0.02 1.52 16 Total: -1.00 -84.39 293.29 1.40 -82.98 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: -0.50 Total: 39.15 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 4.92 Total: 6.84 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -4.99 Total: -131.43 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.06 Total: -40.85 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -84.39 1.40 -82.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650881039.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.418 kcal (2) G-P(sol) polarization free energy of solvation -84.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds