Wall clock time and date at job start Thu Apr 9 2020 12:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35207 * 126.00477 * 2 1 4 4 C 1.34461 * 107.57204 * 180.02562 * 3 2 1 5 5 C 1.40487 * 108.18757 * 359.90955 * 4 3 2 6 6 N 1.30224 * 108.07627 * 0.12066 * 5 4 3 7 7 C 1.50906 * 123.87493 * 180.29484 * 5 4 3 8 8 C 1.53902 * 108.65238 * 341.99072 * 7 5 4 9 9 N 1.46949 * 109.17134 * 46.13790 * 8 7 5 10 10 C 1.34774 * 120.67574 * 113.99624 * 9 8 7 11 11 O 1.21277 * 120.00513 * 359.72003 * 10 9 8 12 12 C 1.50700 * 119.99464 * 179.71775 * 10 9 8 13 13 C 1.50702 * 109.46869 * 179.97438 * 12 10 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 10 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.47438 * 118.63990 * 293.71741 * 9 8 7 22 22 H 1.09003 * 109.46865 * 269.94579 * 1 2 3 23 23 H 1.08993 * 109.47120 * 29.95087 * 1 2 3 24 24 H 1.09005 * 109.46836 * 149.95323 * 1 2 3 25 25 H 1.08006 * 126.21297 * 0.03164 * 3 2 1 26 26 H 1.08999 * 109.60310 * 101.87021 * 7 5 4 27 27 H 1.09004 * 109.60640 * 222.35203 * 7 5 4 28 28 H 1.08999 * 109.60897 * 286.23039 * 8 7 5 29 29 H 1.08997 * 109.62408 * 166.05032 * 8 7 5 30 30 H 1.09004 * 109.47210 * 60.00192 * 12 10 9 31 31 H 1.08994 * 109.47551 * 299.99844 * 12 10 9 32 32 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 33 33 H 1.09006 * 109.93651 * 164.77078 * 21 9 8 34 34 H 1.08996 * 109.94520 * 285.92407 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2598 1.0938 0.0000 4 6 3.5355 0.6686 -0.0006 5 6 3.5295 -0.7362 0.0012 6 7 2.2898 -1.1350 0.0001 7 6 4.7787 -1.5827 0.0076 8 6 5.9660 -0.7113 -0.4393 9 7 5.9179 0.5725 0.2742 10 6 6.8783 0.9033 1.1599 11 8 7.7917 0.1361 1.3789 12 6 6.8171 2.2266 1.8783 13 6 7.9988 2.3499 2.8054 14 1 8.7220 1.5502 2.8679 15 6 8.1601 3.4864 3.5694 16 7 7.2796 4.4604 3.4930 17 14 9.6289 3.6425 4.7128 18 1 10.4649 2.4192 4.6145 19 1 10.4364 4.8261 4.3226 20 1 9.1533 3.8066 6.1101 21 6 4.8008 1.4938 -0.0034 22 1 -0.3633 -0.0010 1.0277 23 1 -0.3633 0.8904 -0.5130 24 1 -0.3633 -0.8896 -0.5146 25 1 1.9300 2.1222 0.0005 26 1 4.9587 -1.9614 1.0137 27 1 4.6589 -2.4170 -0.6837 28 1 5.9052 -0.5330 -1.5128 29 1 6.9015 -1.2207 -0.2079 30 1 5.8948 2.2840 2.4563 31 1 6.8404 3.0370 1.1498 32 1 7.3929 5.2598 4.0307 33 1 4.7479 2.2581 0.7720 34 1 4.9385 1.9621 -0.9780 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143196708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:35 Heat of formation + Delta-G solvation = 44.706661 kcal Electronic energy + Delta-G solvation = -17929.021596 eV Core-core repulsion = 15056.709870 eV Total energy + Delta-G solvation = -2872.311726 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.36035 -38.84652 -35.82402 -33.20736 -32.91826 -31.80616 -30.02133 -28.52735 -27.47214 -24.57144 -23.82414 -22.44008 -20.74801 -19.77275 -17.80538 -16.84146 -16.37630 -15.78747 -15.56259 -15.09103 -14.86367 -14.33766 -13.99163 -13.64282 -13.31783 -13.01304 -12.74517 -12.52776 -12.35821 -12.05183 -11.85619 -11.68463 -11.14844 -11.01700 -10.68545 -10.62386 -10.42870 -9.91254 -9.21216 -9.16770 -8.60615 -8.41427 -8.28153 -8.04331 -6.03099 -4.01790 1.91776 2.48642 2.81452 3.35734 3.42671 3.50824 3.65076 3.72970 4.36982 4.51231 4.81248 4.89480 4.99349 5.16414 5.22011 5.30419 5.35661 5.50691 5.52748 5.77263 5.82154 5.90327 6.04678 6.08496 6.18736 6.40158 6.70328 7.01356 7.07032 7.24710 7.36446 7.75376 7.99641 8.02994 8.41348 9.09238 9.24440 9.63108 11.09439 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.031841 B = 0.005371 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.154298 B = 5211.943374 C = 5809.628362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.388 5.388 3 C 0.064 3.936 4 C -0.247 4.247 5 C 0.091 3.909 6 N -0.297 5.297 7 C -0.054 4.054 8 C 0.115 3.885 9 N -0.629 5.629 10 C 0.520 3.480 11 O -0.544 6.544 12 C 0.007 3.993 13 C -0.506 4.506 14 H 0.075 0.925 15 C 0.054 3.946 16 N -0.902 5.902 17 Si 0.899 3.101 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.192 3.808 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.177 0.823 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.260 0.740 33 H 0.101 0.899 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.657 -5.826 -9.626 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.171 5.171 3 C -0.081 4.081 4 C -0.259 4.259 5 C -0.077 4.077 6 N -0.118 5.118 7 C -0.094 4.094 8 C -0.009 4.009 9 N -0.364 5.364 10 C 0.312 3.688 11 O -0.420 6.420 12 C -0.032 4.032 13 C -0.544 4.544 14 H 0.094 0.906 15 C -0.146 4.146 16 N -0.542 5.542 17 Si 0.727 3.273 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.211 1.211 21 C 0.068 3.932 22 H 0.090 0.910 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.194 0.806 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.136 -7.051 -9.414 18.389 hybrid contribution 0.787 1.019 0.629 1.433 sum -13.349 -6.032 -8.784 17.080 Atomic orbital electron populations 1.21766 0.74442 1.04099 1.03131 1.48464 1.06273 1.03507 1.58879 1.21907 0.90380 0.93439 1.02349 1.20410 0.95023 0.94415 1.16040 1.22205 0.93102 0.93848 0.98563 1.77022 1.01291 1.07993 1.25505 1.20588 0.88916 0.96563 1.03306 1.21479 0.98328 0.85340 0.95725 1.48419 1.25810 1.18268 1.43948 1.22018 0.79465 0.90373 0.76930 1.90521 1.34518 1.53278 1.63714 1.19259 0.99909 0.88189 0.95882 1.21241 1.08242 1.03036 1.21914 0.90642 1.24996 0.96761 0.95619 0.97220 1.69966 1.35613 1.07246 1.41341 0.86396 0.82543 0.78089 0.80233 1.19463 1.21034 1.21071 1.19988 0.80836 0.90695 1.01718 0.91046 0.89628 0.89648 0.80600 0.89534 0.89567 0.91715 0.88368 0.93451 0.93400 0.93028 0.88087 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.80 11.47 59.85 0.69 1.49 16 2 N -0.39 -4.89 4.02 -68.31 -0.27 -5.17 16 3 C 0.06 0.79 11.45 -17.40 -0.20 0.59 16 4 C -0.25 -3.67 5.99 -104.93 -0.63 -4.30 16 5 C 0.09 1.42 7.13 -82.33 -0.59 0.84 16 6 N -0.30 -4.60 12.56 33.75 0.42 -4.18 16 7 C -0.05 -0.76 6.49 -27.31 -0.18 -0.94 16 8 C 0.12 1.78 6.35 -3.33 -0.02 1.76 16 9 N -0.63 -11.58 2.92 -173.17 -0.51 -12.09 16 10 C 0.52 12.13 7.70 -10.99 -0.08 12.05 16 11 O -0.54 -14.31 14.87 5.56 0.08 -14.23 16 12 C 0.01 0.17 3.86 -29.03 -0.11 0.06 16 13 C -0.51 -14.76 8.92 -34.44 -0.31 -15.07 16 14 H 0.08 2.30 6.75 -52.49 -0.35 1.95 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 17 Si 0.90 22.20 29.54 -169.99 -5.02 17.17 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.19 2.99 6.62 -4.51 -0.03 2.96 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.18 1.52 8.06 -52.48 -0.42 1.09 16 26 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.10 1.61 7.00 -51.93 -0.36 1.25 16 30 H 0.05 1.23 7.56 -51.93 -0.39 0.84 16 31 H 0.05 1.22 8.09 -51.93 -0.42 0.80 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.10 1.66 6.17 -51.93 -0.32 1.34 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 288.89 15.07 4.35 4.35 Total: -1.00 -35.20 288.89 -6.13 -41.33 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -4.37 Total: -2.50 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.56 Total: 0.89 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.38 Total: -47.02 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.08 Total: -14.23 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -35.20 -6.13 -41.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143196708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.032 kcal (2) G-P(sol) polarization free energy of solvation -35.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds