Wall clock time and date at job start Thu Apr 9 2020 12:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47525 * 2 1 4 4 C 1.36984 * 120.00215 * 86.56892 * 3 2 1 5 5 H 1.07990 * 120.00225 * 183.23433 * 4 3 2 6 6 C 1.38983 * 119.99438 * 3.23847 * 4 3 2 7 7 N 1.31404 * 120.00205 * 326.02601 * 6 4 3 8 8 Si 1.86798 * 119.99611 * 146.02940 * 6 4 3 9 9 H 1.48505 * 109.47192 * 59.99893 * 8 6 4 10 10 H 1.48498 * 109.47272 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47324 * 299.99723 * 8 6 4 12 12 C 1.34777 * 120.00072 * 266.58030 * 3 2 1 13 13 O 1.21626 * 119.99731 * 5.90285 * 12 3 2 14 14 C 1.47356 * 120.00073 * 185.90594 * 12 3 2 15 15 C 1.41237 * 126.44426 * 39.02768 * 14 12 3 16 16 N 1.30279 * 108.03087 * 179.83960 * 15 14 12 17 17 N 1.40507 * 109.03753 * 0.30637 * 16 15 14 18 18 C 1.34042 * 108.17191 * 359.92298 * 17 16 15 19 19 C 1.51388 * 110.34100 * 179.71676 * 18 17 16 20 20 C 1.54571 * 104.14807 * 343.56899 * 19 18 17 21 21 C 1.47259 * 140.81900 * 180.02562 * 17 16 15 22 22 H 1.08998 * 109.46725 * 60.00338 * 1 2 3 23 23 H 1.09005 * 109.46959 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47115 * 299.99944 * 1 2 3 25 25 H 1.08997 * 109.47619 * 239.99517 * 2 1 3 26 26 H 1.09005 * 109.46973 * 119.99988 * 2 1 3 27 27 H 0.97004 * 120.00245 * 179.97438 * 7 6 4 28 28 H 1.08000 * 125.98485 * 359.97438 * 15 14 12 29 29 H 1.08999 * 110.49987 * 102.23596 * 19 18 17 30 30 H 1.09001 * 110.49544 * 224.90896 * 19 18 17 31 31 H 1.09007 * 110.99225 * 266.92920 * 20 19 18 32 32 H 1.09000 * 111.02486 * 143.12444 * 20 19 18 33 33 H 1.09004 * 110.22774 * 316.05207 * 21 17 16 34 34 H 1.09004 * 110.22622 * 77.91688 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1798 2.0506 1.1842 5 1 2.4897 3.0851 1.1818 6 6 1.9448 1.3983 2.3887 7 7 1.0043 0.4841 2.4683 8 14 2.9660 1.8214 3.8946 9 1 2.7897 3.2586 4.2244 10 1 2.5210 0.9922 5.0433 11 1 4.3987 1.5502 3.6133 12 6 2.3087 1.9933 -1.1651 13 8 2.0647 1.4397 -2.2202 14 6 2.9218 3.3333 -1.1607 15 6 3.9139 3.7990 -0.2698 16 7 4.1978 5.0296 -0.5900 17 7 3.4056 5.4125 -1.6855 18 6 2.6298 4.3731 -2.0240 19 6 1.7477 4.7358 -3.1996 20 6 1.8047 6.2796 -3.2527 21 6 3.1578 6.5656 -2.5673 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 0.8405 0.0286 3.3089 28 1 4.3607 3.2334 0.5344 29 1 2.1436 4.3075 -4.1204 30 1 0.7257 4.3974 -3.0286 31 1 0.9816 6.7203 -2.6901 32 1 1.8056 6.6357 -4.2828 33 1 3.0969 7.4823 -1.9807 34 1 3.9493 6.6472 -3.3123 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001291998621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:10 Heat of formation + Delta-G solvation = 71.925870 kcal Electronic energy + Delta-G solvation = -18582.037171 eV Core-core repulsion = 15710.905759 eV Total energy + Delta-G solvation = -2871.131413 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19134 -38.17275 -35.90236 -34.87996 -31.52448 -30.78588 -29.45251 -28.97710 -26.64576 -24.81374 -22.42873 -21.95287 -20.72124 -19.69994 -18.77246 -17.13634 -16.24410 -15.94732 -14.60718 -14.39515 -14.00877 -13.89117 -13.65558 -13.57249 -13.14957 -12.84359 -12.58880 -12.20922 -11.86891 -11.64641 -11.50466 -11.14933 -11.12478 -11.00425 -10.66702 -10.40628 -10.25759 -10.18660 -9.57656 -8.80207 -8.67131 -8.40111 -7.88158 -7.70001 -6.43614 -3.71440 2.26272 2.68602 3.03412 3.19494 3.24890 3.30346 4.10587 4.25175 4.26360 4.69841 4.74206 4.90776 5.06521 5.08101 5.31240 5.51340 5.61292 5.75865 5.99525 6.00459 6.18809 6.28296 6.48472 6.71595 6.82326 6.91253 7.07377 7.22528 7.26909 7.39297 7.48490 7.75934 7.91267 8.27688 8.49980 9.12840 9.64179 10.05554 10.55790 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024063 B = 0.008322 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.321339 B = 3363.727668 C = 4175.662229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.133 3.867 3 N -0.430 5.430 4 C -0.346 4.346 5 H 0.108 0.892 6 C 0.047 3.953 7 N -0.838 5.838 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.271 1.271 12 C 0.520 3.480 13 O -0.616 6.616 14 C -0.217 4.217 15 C 0.093 3.907 16 N -0.296 5.296 17 N -0.399 5.399 18 C 0.093 3.907 19 C -0.062 4.062 20 C -0.133 4.133 21 C 0.133 3.867 22 H 0.024 0.976 23 H 0.031 0.969 24 H 0.093 0.907 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.269 0.731 28 H 0.199 0.801 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.104 8.238 -5.943 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.010 3.990 3 N -0.147 5.147 4 C -0.472 4.472 5 H 0.126 0.874 6 C -0.160 4.160 7 N -0.475 5.475 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.197 1.197 12 C 0.309 3.691 13 O -0.504 6.504 14 C -0.231 4.231 15 C -0.094 4.094 16 N -0.115 5.115 17 N -0.181 5.181 18 C -0.038 4.038 19 C -0.101 4.101 20 C -0.172 4.172 21 C 0.012 3.988 22 H 0.043 0.957 23 H 0.050 0.950 24 H 0.112 0.888 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.079 0.921 28 H 0.215 0.785 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.710 9.028 -5.957 10.951 hybrid contribution -0.049 -0.517 0.907 1.046 sum 1.661 8.511 -5.050 10.035 Atomic orbital electron populations 1.22051 0.96706 0.99421 1.01986 1.21253 0.94634 0.83000 1.00063 1.43707 1.54295 1.11639 1.05034 1.19761 1.47112 0.98001 0.82374 0.87414 1.25131 0.95446 0.96531 0.98880 1.70264 1.24029 1.26110 1.27073 0.86466 0.81516 0.78804 0.80978 1.19798 1.21012 1.19657 1.16940 0.83954 0.84613 0.83625 1.90585 1.61233 1.67316 1.31291 1.19601 1.06227 0.96627 1.00691 1.24245 0.95723 0.91245 0.98169 1.77080 1.17193 1.15570 1.01687 1.49829 1.31260 1.12051 1.24963 1.22246 0.95130 0.89699 0.96692 1.20810 1.00096 0.94086 0.95105 1.22816 0.96167 0.96277 1.01910 1.22213 0.97929 0.87261 0.91371 0.95720 0.94954 0.88814 0.93966 0.89592 0.92071 0.78455 0.88688 0.88724 0.89631 0.88380 0.89484 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.69 37.16 0.36 -3.04 16 2 C 0.13 3.32 5.38 -4.04 -0.02 3.30 16 3 N -0.43 -11.14 2.62 -116.05 -0.30 -11.45 16 4 C -0.35 -8.79 8.41 -14.97 -0.13 -8.92 16 5 H 0.11 2.70 5.08 -52.49 -0.27 2.43 16 6 C 0.05 1.15 4.85 -17.46 -0.08 1.06 16 7 N -0.84 -21.00 8.50 55.50 0.47 -20.53 16 8 Si 0.90 19.13 29.66 -169.99 -5.04 14.08 16 9 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 12 C 0.52 13.43 7.52 -12.55 -0.09 13.33 16 13 O -0.62 -17.11 16.67 5.25 0.09 -17.02 16 14 C -0.22 -4.96 5.32 -105.04 -0.56 -5.52 16 15 C 0.09 1.96 9.65 -17.07 -0.16 1.80 16 16 N -0.30 -6.00 12.64 30.82 0.39 -5.61 16 17 N -0.40 -7.14 4.81 -55.12 -0.27 -7.41 16 18 C 0.09 1.81 7.48 -81.28 -0.61 1.21 16 19 C -0.06 -0.90 6.86 -26.72 -0.18 -1.08 16 20 C -0.13 -1.32 7.18 -25.20 -0.18 -1.50 16 21 C 0.13 1.58 7.78 -2.92 -0.02 1.55 16 22 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.09 2.38 6.08 -51.93 -0.32 2.07 16 25 H 0.04 1.05 7.41 -51.93 -0.38 0.66 16 26 H 0.09 2.17 6.03 -51.93 -0.31 1.86 16 27 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 28 H 0.20 3.96 7.24 -52.49 -0.38 3.58 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 281.62 15.07 4.24 4.24 Total: -1.00 -31.30 281.62 -6.28 -37.58 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.18 Total: 3.90 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.68 Total: 2.20 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.29 Total: -45.00 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.09 Total: -17.02 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.04 Total: 14.08 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.30 -6.28 -37.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001291998621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.510 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds