Wall clock time and date at job start Thu Apr 9 2020 12:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38269 * 119.94368 * 2 1 4 4 C 1.38139 * 120.05814 * 179.97438 * 3 2 1 5 5 C 1.38738 * 119.94487 * 359.97438 * 4 3 2 6 6 O 1.35899 * 120.05656 * 179.97438 * 5 4 3 7 7 C 1.42900 * 116.99797 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47170 * 179.97438 * 7 6 5 9 9 N 1.46909 * 109.46803 * 64.99891 * 8 7 6 10 10 C 1.46897 * 110.99715 * 199.93610 * 9 8 7 11 11 C 1.46897 * 110.99926 * 75.98679 * 9 8 7 12 12 C 1.50707 * 109.46923 * 189.99883 * 11 9 8 13 13 H 1.07994 * 119.99693 * 0.02562 * 12 11 9 14 14 C 1.37871 * 119.99811 * 179.97438 * 12 11 9 15 15 N 1.31517 * 120.00369 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99882 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47007 * 60.00609 * 16 14 12 18 18 H 1.48498 * 109.47333 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47309 * 300.00215 * 16 14 12 20 20 C 1.38730 * 119.88442 * 0.25089 * 5 4 3 21 21 C 1.38145 * 119.94346 * 359.49949 * 20 5 4 22 22 H 1.08999 * 109.46870 * 90.00329 * 1 2 3 23 23 H 1.08999 * 109.46958 * 209.99849 * 1 2 3 24 24 H 1.09002 * 109.47385 * 330.00502 * 1 2 3 25 25 H 1.08001 * 119.96970 * 359.95321 * 3 2 1 26 26 H 1.08002 * 120.03125 * 179.97438 * 4 3 2 27 27 H 1.09002 * 109.46783 * 299.99779 * 7 6 5 28 28 H 1.09003 * 109.47157 * 59.99581 * 7 6 5 29 29 H 1.08994 * 109.47480 * 184.99374 * 8 7 6 30 30 H 1.09003 * 109.46896 * 305.00270 * 8 7 6 31 31 H 1.09004 * 109.46887 * 64.51460 * 10 9 8 32 32 H 1.08996 * 109.47101 * 184.50979 * 10 9 8 33 33 H 1.09000 * 109.47539 * 304.51556 * 10 9 8 34 34 H 1.09000 * 109.46932 * 309.99583 * 11 9 8 35 35 H 1.08995 * 109.47354 * 69.99438 * 11 9 8 36 36 H 0.96998 * 119.99997 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.02577 * 179.72600 * 20 5 4 38 38 H 1.08004 * 119.97050 * 180.25259 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.2735 0.0001 0.0016 6 8 5.6325 0.0002 0.0016 7 6 6.2812 -1.2731 0.0033 8 6 7.7981 -1.0726 0.0024 9 7 8.2072 -0.4262 1.2566 10 6 9.5269 0.2039 1.1178 11 6 8.1956 -1.3837 2.3705 12 6 8.3782 -0.6438 3.6707 13 1 8.4910 0.4302 3.6696 14 6 8.4000 -1.3381 4.8617 15 7 8.2620 -2.6460 4.8631 16 14 8.6269 -0.4212 6.4732 17 1 7.5214 0.5549 6.6473 18 1 8.6138 -1.3889 7.5995 19 1 9.9252 0.2994 6.4542 20 6 3.5787 -1.2007 -0.0031 21 6 2.1972 -1.1980 0.0016 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6557 2.1326 -0.0008 26 1 4.1172 2.1370 0.0001 27 1 5.9884 -1.8288 0.8941 28 1 5.9883 -1.8313 -0.8859 29 1 8.2924 -2.0400 -0.0857 30 1 8.0806 -0.4419 -0.8405 31 1 9.4687 1.0124 0.3890 32 1 9.8410 0.6053 2.0812 33 1 10.2503 -0.5382 0.7801 34 1 7.2430 -1.9133 2.3845 35 1 9.0075 -2.0996 2.2427 36 1 8.2777 -3.1344 5.7010 37 1 4.1173 -2.1367 -0.0068 38 1 1.6559 -2.1326 0.0020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052816421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:52 Heat of formation + Delta-G solvation = -15.855645 kcal Electronic energy + Delta-G solvation = -17776.227623 eV Core-core repulsion = 15004.830061 eV Total energy + Delta-G solvation = -2771.397561 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.85163 -37.68081 -36.22591 -32.60383 -31.87829 -30.87807 -29.51910 -27.26915 -26.11733 -24.57659 -23.22229 -21.98641 -21.05235 -19.80562 -17.92012 -16.45076 -15.75870 -15.56463 -15.19540 -14.73537 -14.31153 -13.98896 -13.76590 -13.61472 -13.42927 -13.31823 -12.77989 -12.11457 -12.01924 -11.91198 -11.74178 -11.40905 -11.34716 -10.97544 -10.86975 -10.69294 -10.59623 -10.35577 -10.26612 -9.73920 -9.19806 -8.83841 -8.42256 -7.76992 -7.22091 -6.02049 -4.02700 1.51074 1.62415 3.34979 3.38555 3.42276 3.60905 3.93388 4.43901 4.87982 4.93764 4.97064 5.11173 5.28544 5.33687 5.45158 5.50940 5.52835 5.57891 5.69766 5.75403 5.85280 5.91114 6.01960 6.17409 6.19910 6.22454 6.34655 6.46505 6.59591 6.73391 6.75831 6.99416 7.25086 7.31171 7.77880 7.84625 8.08459 8.20504 8.55448 9.04587 9.61362 11.09046 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.020559 B = 0.005166 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.595630 B = 5419.077197 C = 6112.535287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.141 4.141 3 C -0.082 4.082 4 C -0.153 4.153 5 C 0.140 3.860 6 O -0.293 6.293 7 C 0.068 3.932 8 C 0.055 3.945 9 N -0.536 5.536 10 C 0.039 3.961 11 C 0.190 3.810 12 C -0.506 4.506 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.901 5.901 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.209 4.209 21 C -0.080 4.080 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.123 0.877 26 H 0.129 0.871 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.009 0.991 34 H 0.029 0.971 35 H -0.010 1.010 36 H 0.261 0.739 37 H 0.127 0.873 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.391 3.348 -11.720 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.141 4.141 3 C -0.100 4.100 4 C -0.172 4.172 5 C 0.094 3.906 6 O -0.205 6.205 7 C -0.007 4.007 8 C -0.074 4.074 9 N -0.261 5.261 10 C -0.110 4.110 11 C 0.065 3.935 12 C -0.544 4.544 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.228 4.228 21 C -0.098 4.098 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.141 0.859 26 H 0.147 0.853 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.027 0.973 34 H 0.047 0.953 35 H 0.008 0.992 36 H 0.071 0.929 37 H 0.145 0.855 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.583 3.714 -11.483 16.052 hybrid contribution 0.704 -0.616 0.838 1.256 sum -9.879 3.097 -10.645 14.849 Atomic orbital electron populations 1.20665 0.91501 1.02347 1.01656 1.19726 0.95879 0.93163 1.05319 1.20772 0.93039 0.97479 0.98739 1.20425 0.93641 0.96537 1.06592 1.19144 0.83423 0.93892 0.94187 1.86191 1.14981 1.32057 1.87268 1.22930 0.93369 0.83724 1.00691 1.22045 0.92270 0.98289 0.94754 1.62086 1.26999 1.33888 1.03089 1.22207 0.89446 0.97322 1.01996 1.19794 0.96120 0.89805 0.87769 1.21123 1.48872 0.94095 0.90336 0.91854 1.24979 0.95481 0.94862 0.99268 1.69944 1.50789 1.06325 1.26982 0.86560 0.78764 0.79414 0.82694 1.20135 1.21360 1.20244 1.21292 0.95276 0.97428 1.08789 1.20772 0.93349 0.97443 0.98246 0.91876 0.91980 0.91942 0.85858 0.85305 0.91223 0.92786 0.93407 0.91210 0.93538 0.90470 0.97279 0.95341 0.99191 0.92904 0.85545 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.14 -1.76 5.88 -104.60 -0.62 -2.38 16 3 C -0.08 -1.06 9.69 -39.61 -0.38 -1.44 16 4 C -0.15 -2.31 9.99 -39.43 -0.39 -2.70 16 5 C 0.14 2.36 6.69 -39.21 -0.26 2.09 16 6 O -0.29 -5.44 10.08 -19.42 -0.20 -5.63 16 7 C 0.07 1.17 4.93 37.16 0.18 1.36 16 8 C 0.06 1.00 5.38 -3.82 -0.02 0.98 16 9 N -0.54 -11.90 4.63 -244.37 -1.13 -13.03 16 10 C 0.04 0.77 9.36 60.06 0.56 1.33 16 11 C 0.19 5.00 4.55 -4.97 -0.02 4.98 16 12 C -0.51 -14.46 8.39 -34.44 -0.29 -14.75 16 13 H 0.06 1.80 7.16 -52.49 -0.38 1.43 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 16 Si 0.90 21.99 29.54 -169.99 -5.02 16.96 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.21 -3.17 9.04 -39.43 -0.36 -3.53 16 21 C -0.08 -1.06 9.69 -39.61 -0.38 -1.45 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 24 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 25 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 26 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 27 H 0.07 1.32 6.21 -51.93 -0.32 1.00 16 28 H 0.05 0.76 7.65 -51.93 -0.40 0.36 16 29 H 0.05 0.83 8.00 -51.93 -0.42 0.41 16 30 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.65 6.67 -51.93 -0.35 1.30 16 33 H 0.01 0.17 8.13 -51.93 -0.42 -0.26 16 34 H 0.03 0.79 6.58 -51.93 -0.34 0.45 16 35 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.13 1.79 6.30 -52.49 -0.33 1.46 16 38 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 LS Contribution 315.61 15.07 4.76 4.76 Total: -1.00 -31.39 315.61 -8.45 -39.84 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -5.87 Total: -2.03 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.72 Total: -14.64 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -0.39 Total: -39.25 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.20 Total: -5.63 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.39 -8.45 -39.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052816421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.980 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds