Wall clock time and date at job start Thu Apr 9 2020 12:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47432 * 2 1 4 4 C 1.50698 * 109.46864 * 239.99764 * 2 1 3 5 5 H 1.08002 * 120.00011 * 239.99433 * 4 2 1 6 6 C 1.37878 * 120.00258 * 60.00453 * 4 2 1 7 7 N 1.31519 * 119.99330 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00427 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47242 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47143 * 119.99381 * 8 6 4 11 11 H 1.48493 * 109.47404 * 239.99810 * 8 6 4 12 12 N 1.46902 * 109.47077 * 120.00059 * 2 1 3 13 13 C 1.46904 * 110.99771 * 274.99581 * 12 2 1 14 14 C 1.50700 * 109.46706 * 180.02562 * 13 12 2 15 15 O 1.21709 * 120.00393 * 359.97438 * 14 13 12 16 16 N 1.32308 * 119.99519 * 180.02562 * 14 13 12 17 17 C 1.34672 * 119.99562 * 235.47070 * 16 14 13 18 18 C 1.41187 * 120.66912 * 5.06743 * 17 16 14 19 19 C 1.35349 * 119.26062 * 179.71359 * 18 17 16 20 20 N 1.35426 * 120.68673 * 0.57935 * 19 18 17 21 21 H 0.96995 * 119.28547 * 179.72792 * 20 19 18 22 22 C 1.35433 * 121.43738 * 359.69613 * 20 19 18 23 23 C 1.35346 * 120.68181 * 0.02562 * 22 20 19 24 24 H 1.09007 * 109.47019 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46771 * 299.99597 * 1 2 3 26 26 H 1.08994 * 109.47396 * 60.00030 * 1 2 3 27 27 H 0.97003 * 119.99621 * 180.02562 * 7 6 4 28 28 H 1.00906 * 110.99862 * 151.04962 * 12 2 1 29 29 H 1.08992 * 109.47296 * 300.00353 * 13 12 2 30 30 H 1.08998 * 109.46779 * 60.00349 * 13 12 2 31 31 H 1.07999 * 120.36372 * 359.97438 * 18 17 16 32 32 H 1.08000 * 119.65590 * 180.29817 * 19 18 17 33 33 H 1.08000 * 119.65505 * 180.02562 * 22 20 19 34 34 H 1.08003 * 120.36510 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3224 -1.1196 -4.0079 9 1 3.1482 -2.2858 -3.6038 10 1 1.1676 -1.5867 -4.8164 11 1 3.1471 -0.1860 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5886 -0.5215 3.5557 15 8 2.8698 -1.7025 3.4696 16 7 2.7262 0.1089 4.7108 17 6 3.9152 0.1036 5.3432 18 6 5.0503 -0.4781 4.7378 19 6 6.2326 -0.4624 5.3966 20 7 6.3303 0.0928 6.6279 21 1 7.1867 0.0894 7.0833 22 6 5.2584 0.6533 7.2371 23 6 4.0501 0.6739 6.6276 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 0.7082 1.1609 -3.4844 28 1 2.9174 -1.1205 1.0287 29 1 2.7588 1.0462 2.1182 30 1 1.0871 0.6163 2.5525 31 1 4.9769 -0.9267 3.7581 32 1 7.1060 -0.9012 4.9373 33 1 5.3691 1.0884 8.2194 34 1 3.1989 1.1226 7.1180 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646530708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:07 Heat of formation + Delta-G solvation = 31.889215 kcal Electronic energy + Delta-G solvation = -17306.385087 eV Core-core repulsion = 14433.517554 eV Total energy + Delta-G solvation = -2872.867532 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.91997 -38.90760 -35.58054 -34.71488 -32.33870 -31.95341 -30.89023 -28.86673 -25.78763 -24.92841 -23.85364 -23.09981 -19.78916 -19.52790 -19.10388 -17.01645 -16.69517 -16.21747 -15.41436 -15.03312 -14.71888 -14.62398 -14.39218 -13.90859 -13.45431 -12.97526 -12.85047 -12.36522 -12.07205 -11.55275 -11.27797 -11.11469 -10.85753 -10.63373 -10.20384 -10.02020 -10.01497 -9.97450 -9.80774 -8.78762 -8.63132 -8.38630 -7.53664 -7.09478 -5.93950 -3.99489 0.74947 1.08351 2.55098 2.79550 3.34834 3.42150 3.47879 3.61182 4.18989 4.30916 4.48093 4.66867 4.92043 4.97802 5.31571 5.36849 5.50846 5.67871 5.89986 6.13679 6.16213 6.29643 6.49210 6.53372 6.84664 7.01654 7.27319 7.35168 7.61944 7.88606 7.96284 8.00979 8.38427 8.53404 8.73344 8.86800 9.12898 9.65832 11.12642 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.038690 B = 0.004167 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.535392 B = 6718.494599 C = 7110.127116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.210 3.790 3 H 0.001 0.999 4 C -0.514 4.514 5 H 0.061 0.939 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.675 5.675 13 C 0.045 3.955 14 C 0.492 3.508 15 O -0.518 6.518 16 N -0.631 5.631 17 C 0.302 3.698 18 C -0.243 4.243 19 C 0.129 3.871 20 N -0.590 5.590 21 H 0.419 0.581 22 C 0.121 3.879 23 C -0.195 4.195 24 H 0.032 0.968 25 H 0.004 0.996 26 H 0.081 0.919 27 H 0.259 0.741 28 H 0.335 0.665 29 H 0.044 0.956 30 H 0.093 0.907 31 H 0.149 0.851 32 H 0.167 0.833 33 H 0.170 0.830 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.462 2.565 21.266 25.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.018 0.982 4 C -0.553 4.553 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.307 5.307 13 C -0.088 4.088 14 C 0.280 3.720 15 O -0.395 6.395 16 N -0.367 5.367 17 C 0.142 3.858 18 C -0.270 4.270 19 C -0.001 4.001 20 N -0.195 5.195 21 H 0.255 0.745 22 C -0.009 4.009 23 C -0.221 4.221 24 H 0.051 0.949 25 H 0.023 0.977 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.153 0.847 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.167 0.833 32 H 0.184 0.816 33 H 0.187 0.813 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.942 2.056 21.155 24.885 hybrid contribution 1.693 -0.093 -1.307 2.140 sum 14.635 1.964 19.848 24.738 Atomic orbital electron populations 1.21718 0.97801 0.99471 0.99312 1.19155 0.92793 0.92247 0.85511 0.98182 1.21323 1.31181 1.12403 0.90380 0.92084 1.24926 0.95135 0.95046 0.99007 1.69924 1.36840 1.23030 1.23230 0.86449 0.78596 0.79600 0.82812 1.19732 1.20972 1.21171 1.60504 1.32905 1.32202 1.05112 1.21837 1.01687 0.94564 0.90704 1.21622 0.75943 0.87927 0.86540 1.90714 1.45190 1.18131 1.85448 1.68556 1.22190 1.32836 1.13159 1.18848 0.89410 0.86946 0.90549 1.21875 0.92730 1.08236 1.04136 1.21773 0.99690 0.93866 0.84795 1.41021 1.12471 1.49964 1.16038 0.74524 1.21808 0.86681 0.94438 0.97994 1.20708 0.97511 1.08245 0.95613 0.94872 0.97667 0.90054 0.93066 0.84729 0.93840 0.88894 0.83335 0.81559 0.81301 0.83011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.40 9.19 37.16 0.34 -3.06 16 2 C 0.21 5.86 2.60 -68.86 -0.18 5.68 16 3 H 0.00 0.02 7.80 -51.93 -0.40 -0.39 16 4 C -0.51 -15.13 8.59 -34.44 -0.30 -15.42 16 5 H 0.06 1.79 7.62 -52.49 -0.40 1.39 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -26.54 11.32 55.43 0.63 -25.91 16 8 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 N -0.67 -17.12 5.93 -109.22 -0.65 -17.76 16 13 C 0.04 1.00 6.04 -4.97 -0.03 0.97 16 14 C 0.49 10.63 6.33 -12.07 -0.08 10.55 16 15 O -0.52 -12.38 15.43 5.18 0.08 -12.30 16 16 N -0.63 -11.93 10.45 -10.39 -0.11 -12.04 16 17 C 0.30 4.34 6.55 -84.38 -0.55 3.78 16 18 C -0.24 -3.01 8.92 -39.49 -0.35 -3.36 16 19 C 0.13 0.84 11.17 -17.00 -0.19 0.65 16 20 N -0.59 -2.00 5.23 -13.05 -0.07 -2.06 16 21 H 0.42 -0.35 8.90 -40.82 -0.36 -0.71 16 22 C 0.12 0.53 11.17 -16.99 -0.19 0.34 16 23 C -0.19 -1.82 10.00 -39.49 -0.39 -2.21 16 24 H 0.03 0.90 8.14 -51.92 -0.42 0.47 16 25 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 26 H 0.08 2.34 6.07 -51.93 -0.32 2.03 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.33 8.47 7.92 -39.29 -0.31 8.15 16 29 H 0.04 0.94 8.05 -51.93 -0.42 0.52 16 30 H 0.09 2.09 7.44 -51.93 -0.39 1.70 16 31 H 0.15 2.25 6.41 -52.49 -0.34 1.91 16 32 H 0.17 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.17 -0.01 8.06 -52.49 -0.42 -0.43 16 34 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 293.37 15.07 4.42 4.42 Total: -1.00 -39.14 293.37 -6.88 -46.02 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -4.15 Total: 2.90 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -2.01 Total: -0.43 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.20 Total: -57.78 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.08 Total: -12.30 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -39.14 -6.88 -46.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646530708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.908 kcal (2) G-P(sol) polarization free energy of solvation -39.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds