Wall clock time and date at job start Thu Apr 9 2020 12:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35904 * 117.00216 * 2 1 4 4 C 1.38751 * 120.05412 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94641 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05218 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.11180 * 0.25948 * 6 5 4 8 8 C 1.50696 * 119.97243 * 179.70308 * 7 6 5 9 9 C 1.52997 * 109.47496 * 89.99153 * 8 7 6 10 10 H 1.09008 * 109.46988 * 55.00323 * 9 8 7 11 11 C 1.53001 * 109.47238 * 175.00184 * 9 8 7 12 12 N 1.46899 * 109.47626 * 295.00262 * 9 8 7 13 13 C 1.46894 * 111.00266 * 154.99566 * 12 9 8 14 14 C 1.50704 * 109.47052 * 180.02562 * 13 12 9 15 15 H 1.07995 * 120.00128 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00072 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99602 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 119.99946 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47067 * 89.99988 * 18 16 14 20 20 H 1.48505 * 109.47059 * 209.99828 * 18 16 14 21 21 H 1.48501 * 109.47526 * 330.00022 * 18 16 14 22 22 C 1.38173 * 120.05599 * 359.44059 * 7 6 5 23 23 H 1.09001 * 109.47587 * 299.99927 * 1 2 3 24 24 H 1.09007 * 109.47002 * 59.99909 * 1 2 3 25 25 H 1.09004 * 109.47516 * 179.97438 * 1 2 3 26 26 H 1.08007 * 120.02525 * 0.04297 * 4 3 2 27 27 H 1.07998 * 119.97579 * 180.02562 * 5 4 3 28 28 H 1.08002 * 119.93997 * 179.97438 * 6 5 4 29 29 H 1.09003 * 109.47405 * 209.99619 * 8 7 6 30 30 H 1.09005 * 109.46844 * 329.99294 * 8 7 6 31 31 H 1.08994 * 109.47537 * 60.00232 * 11 9 8 32 32 H 1.09002 * 109.47059 * 180.02562 * 11 9 8 33 33 H 1.08999 * 109.47011 * 299.99941 * 11 9 8 34 34 H 1.00896 * 110.99650 * 278.95815 * 12 9 8 35 35 H 1.08999 * 109.47544 * 300.00101 * 13 12 9 36 36 H 1.08996 * 109.47321 * 60.00530 * 13 12 9 37 37 H 0.97001 * 119.99839 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.02637 * 180.25972 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6757 -0.0016 7 6 4.0559 2.5171 -0.0081 8 6 5.5607 2.5981 -0.0166 9 6 6.0783 2.6231 1.4229 10 1 5.6927 1.7581 1.9627 11 6 7.6077 2.5796 1.4158 12 7 5.6266 3.8544 2.0846 13 6 5.5655 3.6772 3.5415 14 6 5.0986 4.9579 4.1841 15 1 4.8698 5.8174 3.5715 16 6 4.9637 5.0325 5.5543 17 7 5.2418 3.9857 6.3003 18 14 4.3857 6.6201 6.3508 19 1 2.9044 6.6113 6.4544 20 1 4.9762 6.7363 7.7085 21 1 4.8171 7.7750 5.5229 22 6 3.4311 1.2847 -0.0013 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2127 2.3203 0.0017 27 1 1.3340 4.5114 0.0008 28 1 3.7922 4.6381 -0.0024 29 1 5.9684 1.7299 -0.5343 30 1 5.8726 3.5073 -0.5307 31 1 7.9933 3.4444 0.8761 32 1 7.9764 2.5969 2.4415 33 1 7.9429 1.6659 0.9250 34 1 6.2179 4.6343 1.8395 35 1 4.8671 2.8754 3.7811 36 1 6.5557 3.4212 3.9183 37 1 5.1472 4.0382 7.2642 38 1 4.0206 0.3798 -0.0022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567692511.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:40 Heat of formation + Delta-G solvation = -26.421133 kcal Electronic energy + Delta-G solvation = -17952.631391 eV Core-core repulsion = 15180.775675 eV Total energy + Delta-G solvation = -2771.855715 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.86187 -37.75375 -36.11033 -33.04199 -31.59112 -30.18766 -29.46471 -27.21759 -26.05607 -25.75544 -22.21995 -21.91038 -20.95320 -19.97926 -17.55391 -16.28285 -16.00994 -15.61622 -15.59115 -14.83145 -14.38246 -14.11968 -13.53932 -13.50289 -13.38446 -13.00066 -12.39050 -12.19376 -11.92992 -11.79225 -11.50268 -11.46151 -11.23565 -11.00044 -10.80119 -10.67535 -10.55580 -10.38036 -10.32328 -9.81732 -9.14770 -8.45439 -8.39841 -7.80624 -7.17789 -5.99021 -4.00281 1.70393 1.87360 3.33903 3.39574 3.42991 3.43560 4.14998 4.45988 4.99074 5.08837 5.15312 5.18364 5.27450 5.33654 5.37006 5.45686 5.57452 5.71247 5.77769 5.80150 5.84086 5.92284 6.07495 6.15610 6.33816 6.35822 6.54813 6.61617 6.63912 6.85148 7.09483 7.14186 7.34681 7.50891 7.66199 7.83554 8.19151 8.47527 8.68852 9.09272 9.64190 11.12148 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.005864 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.214253 B = 4773.527706 C = 5551.251850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.323 6.323 3 C 0.117 3.883 4 C -0.217 4.217 5 C -0.084 4.084 6 C -0.116 4.116 7 C -0.019 4.019 8 C -0.069 4.069 9 C 0.085 3.915 10 H 0.072 0.928 11 C -0.178 4.178 12 N -0.679 5.679 13 C 0.197 3.803 14 C -0.510 4.510 15 H 0.061 0.939 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.155 4.155 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.094 0.906 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.125 0.875 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.327 0.673 35 H 0.025 0.975 36 H -0.015 1.015 37 H 0.260 0.740 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 -4.998 -14.378 15.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.237 6.237 3 C 0.072 3.928 4 C -0.236 4.236 5 C -0.102 4.102 6 C -0.134 4.134 7 C -0.019 4.019 8 C -0.107 4.107 9 C -0.026 4.026 10 H 0.090 0.910 11 C -0.237 4.237 12 N -0.308 5.308 13 C 0.070 3.930 14 C -0.549 4.549 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.173 4.173 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.113 0.887 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.143 0.857 35 H 0.043 0.957 36 H 0.003 0.997 37 H 0.070 0.930 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.412 -5.389 -14.266 16.182 hybrid contribution 0.278 0.910 1.021 1.396 sum -5.134 -4.478 -13.246 14.895 Atomic orbital electron populations 1.22968 0.79026 1.03340 1.01191 1.86027 1.20897 1.27495 1.89266 1.18907 0.92272 0.83789 0.97815 1.21079 0.99368 0.92630 1.10509 1.20890 0.94943 0.96573 0.97836 1.20906 0.93059 0.98463 1.00966 1.19507 0.95596 0.91819 0.95004 1.20692 0.90744 1.01827 0.97461 1.21484 0.91727 0.95745 0.93622 0.91019 1.22499 0.98078 1.01089 1.02072 1.60734 1.54941 1.03142 1.12016 1.19528 0.95081 0.97473 0.80903 1.21185 1.44238 0.98073 0.91362 0.92083 1.24980 0.95717 0.96532 0.97374 1.69967 1.49360 1.29299 1.05197 0.86520 0.78855 0.83637 0.78497 1.20713 1.21372 1.19886 1.20219 0.91099 0.98147 1.07866 0.92754 0.93033 0.88725 0.86311 0.86313 0.85668 0.91551 0.91060 0.92918 0.92314 0.93137 0.85680 0.95679 0.99677 0.93016 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.73 10.50 -19.44 -0.20 -4.93 16 3 C 0.12 1.85 6.69 -39.22 -0.26 1.59 16 4 C -0.22 -3.23 9.04 -39.43 -0.36 -3.59 16 5 C -0.08 -1.29 10.04 -39.60 -0.40 -1.69 16 6 C -0.12 -1.89 9.30 -39.56 -0.37 -2.26 16 7 C -0.02 -0.31 4.95 -104.65 -0.52 -0.83 16 8 C -0.07 -1.01 5.02 -27.89 -0.14 -1.15 16 9 C 0.09 1.49 2.58 -67.71 -0.17 1.31 16 10 H 0.07 1.39 7.80 -51.92 -0.40 0.98 16 11 C -0.18 -2.74 9.16 37.16 0.34 -2.40 16 12 N -0.68 -14.15 5.62 -107.99 -0.61 -14.76 16 13 C 0.20 5.17 5.24 -4.98 -0.03 5.15 16 14 C -0.51 -14.51 9.32 -34.44 -0.32 -14.83 16 15 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 18 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 C -0.15 -2.50 9.64 -39.43 -0.38 -2.88 16 23 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 24 H 0.05 0.45 7.66 -51.92 -0.40 0.06 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.12 1.47 6.30 -52.48 -0.33 1.13 16 27 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 28 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 29 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 30 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 31 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.06 1.02 7.45 -51.93 -0.39 0.63 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.33 6.51 8.46 -39.29 -0.33 6.18 16 35 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 36 H -0.01 -0.40 7.44 -51.93 -0.39 -0.79 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 318.22 15.07 4.80 4.80 Total: -1.00 -31.40 318.22 -7.99 -39.39 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.98 Total: 3.86 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -1.71 Total: -18.77 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.13 Total: -41.27 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.20 Total: -4.93 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.40 -7.99 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567692511.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.967 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds