Wall clock time and date at job start Thu Apr 9 2020 12:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35904 * 117.00216 * 2 1 4 4 C 1.38751 * 120.05412 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94641 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05218 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.11180 * 0.25948 * 6 5 4 8 8 C 1.50696 * 119.97243 * 179.70308 * 7 6 5 9 9 C 1.52997 * 109.47496 * 89.99153 * 8 7 6 10 10 H 1.09008 * 109.46988 * 55.00323 * 9 8 7 11 11 C 1.53001 * 109.47238 * 175.00184 * 9 8 7 12 12 N 1.46899 * 109.47626 * 295.00262 * 9 8 7 13 13 C 1.46894 * 111.00266 * 154.99566 * 12 9 8 14 14 C 1.50704 * 109.47052 * 180.02562 * 13 12 9 15 15 H 1.07995 * 120.00128 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00072 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99602 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 119.99946 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47067 * 89.99988 * 18 16 14 20 20 H 1.48505 * 109.47059 * 209.99828 * 18 16 14 21 21 H 1.48501 * 109.47526 * 330.00022 * 18 16 14 22 22 C 1.38173 * 120.05599 * 359.44059 * 7 6 5 23 23 H 1.09001 * 109.47587 * 299.99927 * 1 2 3 24 24 H 1.09007 * 109.47002 * 59.99909 * 1 2 3 25 25 H 1.09004 * 109.47516 * 179.97438 * 1 2 3 26 26 H 1.08007 * 120.02525 * 0.04297 * 4 3 2 27 27 H 1.07998 * 119.97579 * 180.02562 * 5 4 3 28 28 H 1.08002 * 119.93997 * 179.97438 * 6 5 4 29 29 H 1.09003 * 109.47405 * 209.99619 * 8 7 6 30 30 H 1.09005 * 109.46844 * 329.99294 * 8 7 6 31 31 H 1.08994 * 109.47537 * 60.00232 * 11 9 8 32 32 H 1.09002 * 109.47059 * 180.02562 * 11 9 8 33 33 H 1.08999 * 109.47011 * 299.99941 * 11 9 8 34 34 H 1.00896 * 110.99650 * 278.95815 * 12 9 8 35 35 H 1.08999 * 109.47544 * 300.00101 * 13 12 9 36 36 H 1.08996 * 109.47321 * 60.00530 * 13 12 9 37 37 H 0.97001 * 119.99839 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.02637 * 180.25972 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6757 -0.0016 7 6 4.0559 2.5171 -0.0081 8 6 5.5607 2.5981 -0.0166 9 6 6.0783 2.6231 1.4229 10 1 5.6927 1.7581 1.9627 11 6 7.6077 2.5796 1.4158 12 7 5.6266 3.8544 2.0846 13 6 5.5655 3.6772 3.5415 14 6 5.0986 4.9579 4.1841 15 1 4.8698 5.8174 3.5715 16 6 4.9637 5.0325 5.5543 17 7 5.2418 3.9857 6.3003 18 14 4.3857 6.6201 6.3508 19 1 2.9044 6.6113 6.4544 20 1 4.9762 6.7363 7.7085 21 1 4.8171 7.7750 5.5229 22 6 3.4311 1.2847 -0.0013 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2127 2.3203 0.0017 27 1 1.3340 4.5114 0.0008 28 1 3.7922 4.6381 -0.0024 29 1 5.9684 1.7299 -0.5343 30 1 5.8726 3.5073 -0.5307 31 1 7.9933 3.4444 0.8761 32 1 7.9764 2.5969 2.4415 33 1 7.9429 1.6659 0.9250 34 1 6.2179 4.6343 1.8395 35 1 4.8671 2.8754 3.7811 36 1 6.5557 3.4212 3.9183 37 1 5.1472 4.0382 7.2642 38 1 4.0206 0.3798 -0.0022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567692511.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:40 Heat of formation + Delta-G solvation = -46.138595 kcal Electronic energy + Delta-G solvation = -17953.486404 eV Core-core repulsion = 15180.775675 eV Total energy + Delta-G solvation = -2772.710729 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.98894 -38.99713 -37.56011 -35.04239 -33.12506 -31.46274 -30.89155 -28.18578 -27.87407 -27.10553 -23.88695 -23.40799 -22.30192 -21.34550 -18.75944 -18.35422 -17.13673 -16.84244 -16.68418 -16.57971 -15.82393 -15.74951 -15.01758 -14.90503 -14.57228 -14.26728 -14.02905 -13.51395 -13.47446 -13.17402 -12.99321 -12.85055 -12.65669 -12.55300 -12.35025 -12.19002 -11.91523 -11.82844 -11.64526 -11.54475 -11.22560 -10.64501 -9.63573 -8.98708 -8.94032 -8.20032 -6.30490 0.50922 0.66495 1.40698 1.42605 1.53639 2.40887 2.44445 2.94191 3.13410 3.64971 3.92133 3.99032 4.15853 4.29395 4.35142 4.40113 4.46786 4.47890 4.59286 4.63639 4.69244 4.73247 4.88009 4.96855 5.03911 5.04801 5.18259 5.28106 5.33125 5.41873 5.45401 5.64297 5.65840 5.89686 5.98525 6.07851 6.53379 6.56082 6.80791 6.98650 7.40480 8.91641 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.005864 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.214253 B = 4773.527706 C = 5551.251850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.105 3.895 4 C -0.221 4.221 5 C -0.093 4.093 6 C -0.135 4.135 7 C -0.032 4.032 8 C -0.059 4.059 9 C 0.084 3.916 10 H 0.044 0.956 11 C -0.170 4.170 12 N -0.673 5.673 13 C 0.216 3.784 14 C -0.528 4.528 15 H 0.066 0.934 16 C -0.001 4.001 17 N -0.937 5.937 18 Si 0.971 3.029 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.174 4.174 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.119 0.881 26 H 0.143 0.857 27 H 0.139 0.861 28 H 0.125 0.875 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.031 0.969 33 H 0.077 0.923 34 H 0.335 0.665 35 H -0.014 1.014 36 H -0.040 1.040 37 H 0.263 0.737 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.457 -4.081 -15.494 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.061 3.939 4 C -0.240 4.240 5 C -0.111 4.111 6 C -0.154 4.154 7 C -0.032 4.032 8 C -0.097 4.097 9 C -0.026 4.026 10 H 0.062 0.938 11 C -0.229 4.229 12 N -0.303 5.303 13 C 0.088 3.912 14 C -0.566 4.566 15 H 0.084 0.916 16 C -0.199 4.199 17 N -0.578 5.578 18 Si 0.795 3.205 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.184 1.184 22 C -0.193 4.193 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.137 0.863 26 H 0.161 0.839 27 H 0.157 0.843 28 H 0.143 0.857 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.152 0.848 35 H 0.004 0.996 36 H -0.022 1.022 37 H 0.072 0.928 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.048 -4.475 -15.416 17.154 hybrid contribution 0.422 0.527 1.327 1.489 sum -5.626 -3.948 -14.089 15.676 Atomic orbital electron populations 1.23289 0.76789 1.05358 1.01976 1.86005 1.23278 1.27049 1.89103 1.19130 0.92536 0.84659 0.97601 1.21379 1.00700 0.92144 1.09774 1.21211 0.94927 0.97667 0.97287 1.21084 0.93834 0.98562 1.01878 1.19712 0.96437 0.91867 0.95204 1.20636 0.89932 1.03800 0.95307 1.21540 0.93348 0.92980 0.94743 0.93757 1.22392 0.96080 1.03425 1.00997 1.60594 1.55937 1.05060 1.08696 1.19091 0.92413 0.95514 0.84159 1.21558 1.44276 0.98772 0.92000 0.91612 1.25953 0.95616 1.00247 0.98065 1.70109 1.50364 1.31716 1.05590 0.85362 0.78328 0.79280 0.77501 1.20155 1.20856 1.18431 1.20448 0.91811 0.98502 1.08497 0.92647 0.91457 0.86254 0.83891 0.84336 0.85659 0.89009 0.89504 0.91045 0.95020 0.90375 0.84796 0.99597 1.02239 0.92819 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.34 -9.67 10.50 -92.47 -0.97 -10.64 16 3 C 0.11 3.30 6.69 22.50 0.15 3.45 16 4 C -0.22 -6.34 9.04 22.36 0.20 -6.13 16 5 C -0.09 -2.75 10.04 22.25 0.22 -2.53 16 6 C -0.14 -4.34 9.30 22.28 0.21 -4.13 16 7 C -0.03 -1.02 4.95 -19.88 -0.10 -1.12 16 8 C -0.06 -1.64 5.02 29.85 0.15 -1.49 16 9 C 0.08 2.93 2.58 44.91 0.12 3.05 16 10 H 0.04 1.78 7.80 -2.38 -0.02 1.76 16 11 C -0.17 -5.05 9.16 71.98 0.66 -4.39 16 12 N -0.67 -28.33 5.62 -495.59 -2.78 -31.12 16 13 C 0.22 11.78 5.24 85.56 0.45 12.23 16 14 C -0.53 -30.38 9.32 25.60 0.24 -30.14 16 15 H 0.07 3.64 7.81 -2.91 -0.02 3.62 16 16 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 17 N -0.94 -57.97 13.29 21.45 0.28 -57.69 16 18 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 22 C -0.17 -5.61 9.64 22.37 0.22 -5.39 16 23 H 0.05 1.01 7.66 -2.39 -0.02 1.00 16 24 H 0.07 1.03 7.66 -2.38 -0.02 1.02 16 25 H 0.12 1.58 8.14 -2.38 -0.02 1.57 16 26 H 0.14 3.24 6.30 -2.91 -0.02 3.23 16 27 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 28 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 29 H 0.09 2.10 8.09 -2.39 -0.02 2.08 16 30 H 0.09 2.16 8.09 -2.38 -0.02 2.14 16 31 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 32 H 0.03 1.10 7.45 -2.39 -0.02 1.08 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.33 13.20 8.46 -89.70 -0.76 12.44 16 35 H -0.01 -0.87 8.06 -2.39 -0.02 -0.89 16 36 H -0.04 -2.34 7.44 -2.39 -0.02 -2.36 16 37 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -68.73 318.22 2.92 -65.81 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.27 Total: 21.42 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 4.09 Total: -34.72 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -2.50 Total: -88.80 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.97 Total: -10.64 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -68.73 2.92 -65.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567692511.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.672 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds