Wall clock time and date at job start Thu Apr 9 2020 12:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50697 * 109.47463 * 295.00146 * 4 2 1 6 6 H 1.08007 * 119.99713 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00558 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99821 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00224 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46887 * 59.99783 * 9 7 5 11 11 H 1.48492 * 109.47137 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47042 * 300.00308 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 14 14 N 1.46490 * 109.47115 * 64.99762 * 13 2 1 15 15 C 1.46504 * 120.00207 * 90.00450 * 14 13 2 16 16 C 1.39670 * 120.00349 * 269.99796 * 14 13 2 17 17 C 1.38975 * 120.04140 * 359.73100 * 16 14 13 18 18 C 1.38113 * 120.03323 * 179.76737 * 17 16 14 19 19 C 1.38226 * 120.12867 * 0.50421 * 18 17 16 20 20 C 1.38772 * 120.08748 * 359.74486 * 19 18 17 21 21 O 1.35899 * 120.01003 * 179.97438 * 20 19 18 22 22 C 1.38610 * 119.96686 * 0.02562 * 20 19 18 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 27 27 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 28 28 H 0.97002 * 120.00259 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.47135 * 184.99942 * 13 2 1 30 30 H 1.08996 * 109.46945 * 304.99450 * 13 2 1 31 31 H 1.08995 * 109.47421 * 89.99750 * 15 14 13 32 32 H 1.09005 * 109.47273 * 210.00082 * 15 14 13 33 33 H 1.09006 * 109.46717 * 329.99496 * 15 14 13 34 34 H 1.08002 * 119.98319 * 0.02562 * 17 16 14 35 35 H 1.07996 * 119.93788 * 180.22752 * 18 17 16 36 36 H 1.08001 * 119.95279 * 179.76866 * 19 18 17 37 37 H 0.96704 * 114.00171 * 270.01929 * 21 20 19 38 38 H 1.07999 * 120.05924 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4024 3.7283 8 7 2.6757 -1.5193 3.8511 9 14 1.4989 0.5627 5.2497 10 1 0.0190 0.6703 5.3090 11 1 1.9928 -0.1380 6.4621 12 1 2.0920 1.9227 5.1871 13 6 2.0400 -0.7212 -1.2494 14 7 1.6524 0.0355 -2.4423 15 6 2.5427 1.0698 -2.9751 16 6 0.4341 -0.2293 -3.0720 17 6 -0.4086 -1.2142 -2.5708 18 6 -1.6154 -1.4725 -3.1908 19 6 -1.9835 -0.7600 -4.3167 20 6 -1.1437 0.2210 -4.8246 21 8 -1.5070 0.9202 -5.9319 22 6 0.0662 0.4867 -4.2026 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.6055 -1.7198 1.2950 27 1 3.1264 -0.7995 1.2055 28 1 2.9230 -1.8423 4.7317 29 1 3.1264 -0.7994 -1.2057 30 1 1.6055 -1.7197 -1.2953 31 1 3.2229 0.6249 -3.7013 32 1 1.9496 1.8451 -3.4602 33 1 3.1179 1.5091 -2.1600 34 1 -0.1215 -1.7750 -1.6936 35 1 -2.2707 -2.2357 -2.7979 36 1 -2.9262 -0.9670 -4.8014 37 1 -1.2169 0.5195 -6.7628 38 1 0.7207 1.2501 -4.5964 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602714607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:00 Heat of formation + Delta-G solvation = -21.355193 kcal Electronic energy + Delta-G solvation = -18146.541515 eV Core-core repulsion = 15374.905475 eV Total energy + Delta-G solvation = -2771.636040 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.88326 -37.87948 -35.80377 -34.27511 -32.15784 -29.95490 -29.56348 -27.41805 -26.59378 -24.88815 -23.09189 -22.03024 -20.82129 -19.11496 -18.21117 -16.69062 -16.30898 -15.78336 -15.38336 -14.79110 -14.68528 -14.25654 -13.91844 -13.70608 -13.53900 -12.76005 -12.33289 -12.13974 -11.95542 -11.92102 -11.62943 -11.43290 -11.08590 -10.81541 -10.77970 -10.60437 -10.44194 -10.34217 -9.72286 -9.58709 -9.24293 -9.02007 -8.54614 -8.35815 -7.02063 -6.00589 -4.02087 1.47463 1.73226 3.32790 3.34386 3.37298 3.40524 3.88625 4.34952 4.45804 5.00325 5.19894 5.34218 5.35142 5.40229 5.51230 5.55159 5.65700 5.81383 5.85339 5.88999 5.97169 6.02735 6.23205 6.33533 6.50277 6.55556 6.60599 6.71917 6.82433 6.95108 7.08493 7.12890 7.51489 7.62281 7.64122 7.75730 7.81598 7.98275 8.42469 9.03488 9.61619 11.10598 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.035914 B = 0.004647 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.444681 B = 6023.387878 C = 6279.034409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 H 0.056 0.944 4 C 0.029 3.971 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.123 3.877 14 N -0.624 5.624 15 C 0.092 3.908 16 C 0.242 3.758 17 C -0.199 4.199 18 C -0.060 4.060 19 C -0.214 4.214 20 C 0.143 3.857 21 O -0.504 6.504 22 C -0.235 4.235 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.037 0.963 26 H 0.017 0.983 27 H 0.014 0.986 28 H 0.260 0.740 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.133 0.867 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.386 0.614 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.924 1.133 -17.140 17.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.122 4.122 3 H 0.075 0.925 4 C -0.008 4.008 5 C -0.552 4.552 6 H 0.073 0.927 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.001 3.999 14 N -0.332 5.332 15 C -0.051 4.051 16 C 0.138 3.862 17 C -0.221 4.221 18 C -0.079 4.079 19 C -0.234 4.234 20 C 0.098 3.902 21 O -0.313 6.313 22 C -0.259 4.259 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.151 0.849 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.241 0.759 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.888 1.442 -16.501 17.014 hybrid contribution 0.007 0.278 0.645 0.703 sum -3.881 1.720 -15.856 16.414 Atomic orbital electron populations 1.21861 0.95952 1.00622 1.00375 1.21644 0.95904 0.99725 0.94907 0.92510 1.19092 0.95997 0.95505 0.90227 1.21170 1.34799 1.08322 0.90956 0.92714 1.25000 0.95265 0.95066 0.99059 1.69945 1.38938 1.21173 1.23554 0.86695 0.78940 0.80115 0.82487 1.20263 1.21319 1.20316 1.21804 0.99651 0.94930 0.83549 1.46704 1.17264 1.39772 1.29450 1.21612 0.93582 0.90762 0.99151 1.17637 0.85817 0.92375 0.90351 1.21012 0.95926 1.01666 1.03463 1.20739 0.95383 0.97792 0.93959 1.21048 1.01547 0.99933 1.00909 1.18116 0.91991 0.91354 0.88744 1.84793 1.79857 1.51344 1.15353 1.20802 0.98861 1.05756 1.00440 0.92437 0.93622 0.94399 0.96484 0.96725 0.92993 0.91075 0.90993 0.93710 0.91784 0.91182 0.84899 0.85963 0.86403 0.75882 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 7.45 37.16 0.28 -2.25 16 2 C -0.10 -2.03 2.54 -90.62 -0.23 -2.26 16 3 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 4 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 5 C -0.51 -14.21 8.41 -34.44 -0.29 -14.50 16 6 H 0.05 1.49 7.06 -52.48 -0.37 1.12 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.12 2.03 4.95 -4.04 -0.02 2.01 16 14 N -0.62 -9.26 2.87 -179.64 -0.52 -9.78 16 15 C 0.09 1.12 10.19 59.85 0.61 1.73 16 16 C 0.24 3.62 5.37 -83.81 -0.45 3.17 16 17 C -0.20 -2.93 7.16 -39.35 -0.28 -3.21 16 18 C -0.06 -0.79 10.03 -39.63 -0.40 -1.18 16 19 C -0.21 -2.75 9.98 -39.39 -0.39 -3.15 16 20 C 0.14 1.90 6.70 -39.25 -0.26 1.63 16 21 O -0.50 -5.80 13.50 -19.42 -0.26 -6.06 16 22 C -0.24 -3.26 9.14 -39.24 -0.36 -3.62 16 23 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 24 H 0.04 0.85 6.67 -51.93 -0.35 0.50 16 25 H 0.04 0.69 5.86 -51.93 -0.30 0.38 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 30 H 0.07 1.17 6.18 -51.93 -0.32 0.85 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.72 6.20 -51.93 -0.32 0.40 16 33 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.13 2.02 4.42 -52.49 -0.23 1.79 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.39 2.44 9.06 45.56 0.41 2.86 16 38 H 0.12 1.56 6.14 -52.49 -0.32 1.24 16 LS Contribution 304.01 15.07 4.58 4.58 Total: -1.00 -31.09 304.01 -7.18 -38.27 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.68 Total: 1.75 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -2.02 Total: -19.51 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.22 Total: -35.61 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.26 Total: -6.06 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.09 -7.18 -38.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602714607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.915 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds