Wall clock time and date at job start Thu Apr 9 2020 12:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46888 * 2 1 4 4 N 1.46900 * 109.46955 * 179.25000 * 3 2 1 5 5 C 1.46903 * 110.99812 * 164.05280 * 4 3 2 6 6 C 1.50705 * 109.47147 * 293.95145 * 5 4 3 7 7 H 1.08000 * 119.99808 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00185 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99595 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00122 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46770 * 60.00434 * 10 8 6 12 12 H 1.48497 * 109.47040 * 300.00509 * 10 8 6 13 13 H 1.48495 * 109.47025 * 180.02562 * 10 8 6 14 14 C 1.46899 * 111.00488 * 288.00637 * 4 3 2 15 15 C 1.52993 * 109.47500 * 160.53051 * 14 4 3 16 16 H 1.08997 * 110.52081 * 52.40676 * 15 14 4 17 17 C 1.54835 * 110.57877 * 289.46140 * 15 14 4 18 18 C 1.56225 * 103.67339 * 240.16637 * 17 15 14 19 19 H 1.08999 * 116.70431 * 164.20446 * 18 17 15 20 20 C 1.53359 * 104.84891 * 294.52472 * 18 17 15 21 21 C 1.31805 * 108.42518 * 69.73325 * 20 18 17 22 22 C 1.53364 * 108.42242 * 0.02562 * 21 20 18 23 23 H 1.08994 * 116.32914 * 160.59864 * 22 21 20 24 24 C 1.57254 * 100.62522 * 33.58382 * 22 21 20 25 25 H 1.08995 * 109.46825 * 299.99585 * 1 2 3 26 26 H 1.08995 * 109.47250 * 60.00058 * 1 2 3 27 27 H 1.09003 * 109.46808 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47334 * 240.00393 * 2 1 3 29 29 H 1.08995 * 109.47250 * 119.99942 * 2 1 3 30 30 H 1.09002 * 109.47310 * 59.25004 * 3 2 1 31 31 H 1.09002 * 109.47557 * 299.24855 * 3 2 1 32 32 H 1.09005 * 109.47375 * 173.95551 * 5 4 3 33 33 H 1.09000 * 109.47362 * 53.95732 * 5 4 3 34 34 H 0.97004 * 120.00707 * 0.02562 * 9 8 6 35 35 H 1.09004 * 109.46886 * 280.53473 * 14 4 3 36 36 H 1.09000 * 109.46692 * 40.52593 * 14 4 3 37 37 H 1.09004 * 110.58672 * 0.02562 * 17 15 14 38 38 H 1.09000 * 110.58258 * 122.90512 * 17 15 14 39 39 H 1.07991 * 125.79135 * 249.75417 * 20 18 17 40 40 H 1.07992 * 125.78557 * 179.97438 * 21 20 18 41 41 H 1.08998 * 112.52171 * 66.43527 * 24 22 21 42 42 H 1.09007 * 112.52120 * 194.29637 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5088 1.4426 0.0181 5 6 4.0399 2.7597 -0.3579 6 6 3.6991 3.0463 -1.7977 7 1 3.1433 2.3226 -2.3754 8 6 4.0960 4.2328 -2.3770 9 7 4.7725 5.1142 -1.6733 10 14 3.6730 4.5884 -4.1614 11 1 2.1977 4.5823 -4.3310 12 1 4.2755 3.5456 -5.0302 13 1 4.2099 5.9197 -4.5416 14 6 4.0193 1.0244 1.3306 15 6 5.4735 0.5700 1.1911 16 1 6.0664 1.3349 0.6897 17 6 5.5529 -0.7735 0.4256 18 6 6.2287 -1.7419 1.4484 19 1 6.1529 -2.8085 1.2368 20 6 7.6449 -1.1854 1.6399 21 6 7.5595 -0.0466 2.2981 22 6 6.0805 0.2340 2.5912 23 1 5.8726 0.9449 3.3908 24 6 5.5417 -1.2298 2.7910 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6657 1.9603 0.8832 31 1 1.6877 1.9525 -0.8966 32 1 5.1228 2.7640 -0.2331 33 1 3.5977 3.5253 0.2796 34 1 4.9925 4.9294 -0.7468 35 1 3.9655 1.8627 2.0252 36 1 3.4155 0.1996 1.7091 37 1 4.5562 -1.1146 0.1456 38 1 6.1867 -0.6755 -0.4557 39 1 8.5574 -1.6478 1.2939 40 1 8.3902 0.5817 2.5833 41 1 5.9566 -1.7101 3.6771 42 1 4.4531 -1.2808 2.7676 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207627075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:58 Heat of formation + Delta-G solvation = 2.259669 kcal Electronic energy + Delta-G solvation = -18964.147195 eV Core-core repulsion = 16329.368267 eV Total energy + Delta-G solvation = -2634.778928 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.58296 -38.73518 -35.26949 -34.12962 -32.05947 -29.97225 -28.83543 -28.51879 -26.73420 -25.30802 -23.27121 -22.06018 -21.24208 -20.63411 -19.02794 -18.72110 -17.37971 -16.92110 -16.33025 -15.82390 -15.65312 -15.43219 -15.22441 -14.57516 -13.89408 -13.76090 -13.46901 -13.26242 -13.18717 -13.00965 -12.78858 -12.55827 -12.33937 -12.20767 -12.14226 -11.99444 -11.95016 -11.71748 -11.71212 -11.53471 -11.26844 -11.02316 -10.73387 -10.57931 -9.81544 -9.08911 -8.69266 -6.39413 1.33482 1.50507 1.59473 1.78848 2.54138 3.08924 3.15828 3.56798 3.61507 3.76715 4.02516 4.10499 4.16776 4.20648 4.30972 4.42773 4.44705 4.53883 4.55999 4.58667 4.67680 4.70153 4.80603 4.81386 4.88009 4.98360 5.03514 5.07540 5.10208 5.16857 5.18424 5.28230 5.32457 5.35679 5.40802 5.45082 5.56736 5.81213 6.00297 6.07304 6.41663 6.43428 6.65616 7.41234 8.68790 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.017915 B = 0.006858 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.559134 B = 4081.763681 C = 5109.249600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C 0.062 3.938 4 N -0.532 5.532 5 C 0.199 3.801 6 C -0.595 4.595 7 H 0.054 0.946 8 C -0.039 4.039 9 N -0.938 5.938 10 Si 1.120 2.880 11 H -0.268 1.268 12 H -0.270 1.270 13 H -0.283 1.283 14 C 0.066 3.934 15 C -0.078 4.078 16 H 0.031 0.969 17 C -0.095 4.095 18 C -0.075 4.075 19 H 0.119 0.881 20 C -0.166 4.166 21 C -0.182 4.182 22 C -0.079 4.079 23 H 0.095 0.905 24 C -0.109 4.109 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.013 0.987 31 H 0.055 0.945 32 H -0.003 1.003 33 H -0.053 1.053 34 H 0.251 0.749 35 H 0.007 0.993 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.139 0.861 40 H 0.128 0.872 41 H 0.086 0.914 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.281 -15.211 8.116 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.066 4.066 4 N -0.255 5.255 5 C 0.072 3.928 6 C -0.633 4.633 7 H 0.073 0.927 8 C -0.236 4.236 9 N -0.576 5.576 10 Si 0.940 3.060 11 H -0.193 1.193 12 H -0.196 1.196 13 H -0.209 1.209 14 C -0.062 4.062 15 C -0.097 4.097 16 H 0.050 0.950 17 C -0.133 4.133 18 C -0.093 4.093 19 H 0.137 0.863 20 C -0.184 4.184 21 C -0.199 4.199 22 C -0.098 4.098 23 H 0.113 0.887 24 C -0.146 4.146 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.015 0.985 33 H -0.036 1.036 34 H 0.060 0.940 35 H 0.025 0.975 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.157 0.843 40 H 0.146 0.854 41 H 0.105 0.895 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.979 -14.425 6.564 15.878 hybrid contribution 0.037 0.380 1.793 1.833 sum -0.942 -14.045 8.357 16.370 Atomic orbital electron populations 1.21701 0.94290 1.02543 1.01665 1.21455 0.96310 0.94523 1.02147 1.22079 0.87250 0.97984 0.99335 1.61950 1.07917 1.28209 1.27439 1.19471 0.93146 0.85041 0.95109 1.22284 1.38493 1.05179 0.97364 0.92736 1.27429 0.93573 0.92687 1.09909 1.70927 1.38909 1.37624 1.10163 0.82906 0.77150 0.76333 0.69562 1.19264 1.19556 1.20863 1.22186 0.96058 0.98613 0.89306 1.22219 0.94424 0.97155 0.95935 0.95042 1.22487 1.00299 0.93795 0.96669 1.23352 0.91980 0.98870 0.95050 0.86282 1.24277 0.98175 0.97347 0.98596 1.24188 0.96796 0.97770 1.01190 1.22979 0.93050 0.98333 0.95402 0.88680 1.24365 1.00283 0.92792 0.97127 0.92657 0.93314 0.90649 0.92209 0.91316 0.96831 0.92630 0.98482 1.03590 0.93998 0.97465 0.89001 0.90771 0.94253 0.84305 0.85421 0.89540 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.11 -3.17 6.01 30.60 0.18 -2.99 16 3 C 0.06 2.44 4.80 86.30 0.41 2.86 16 4 N -0.53 -23.50 4.28 -900.77 -3.86 -27.36 16 5 C 0.20 10.99 3.86 85.56 0.33 11.32 16 6 C -0.60 -35.10 8.28 25.60 0.21 -34.88 16 7 H 0.05 3.18 7.25 -2.91 -0.02 3.16 16 8 C -0.04 -2.32 5.46 84.65 0.46 -1.86 16 9 N -0.94 -59.88 13.65 21.45 0.29 -59.59 16 10 Si 1.12 51.69 29.90 68.60 2.05 53.74 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 14 C 0.07 2.42 3.97 86.30 0.34 2.76 16 15 C -0.08 -2.71 2.43 -9.04 -0.02 -2.73 16 16 H 0.03 1.36 6.60 -2.39 -0.02 1.34 16 17 C -0.09 -2.92 5.82 32.34 0.19 -2.73 16 18 C -0.07 -1.72 5.28 -7.28 -0.04 -1.76 16 19 H 0.12 2.19 8.14 -2.39 -0.02 2.18 16 20 C -0.17 -3.97 10.19 25.78 0.26 -3.70 16 21 C -0.18 -4.75 10.14 25.78 0.26 -4.49 16 22 C -0.08 -2.15 4.63 -8.04 -0.04 -2.19 16 23 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 24 C -0.11 -2.36 6.74 34.36 0.23 -2.12 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 1.82 6.52 -2.39 -0.02 1.81 16 30 H 0.01 0.53 8.05 -2.39 -0.02 0.51 16 31 H 0.06 2.52 6.59 -2.39 -0.02 2.50 16 32 H 0.00 -0.17 6.43 -2.38 -0.02 -0.18 16 33 H -0.05 -3.20 7.99 -2.39 -0.02 -3.22 16 34 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 35 H 0.01 0.28 8.00 -2.39 -0.02 0.26 16 36 H 0.09 2.81 5.19 -2.39 -0.01 2.80 16 37 H 0.07 2.29 7.74 -2.39 -0.02 2.27 16 38 H 0.04 1.35 8.08 -2.39 -0.02 1.33 16 39 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 40 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 41 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 1.68 7.07 -2.38 -0.02 1.67 16 Total: -1.00 -67.74 322.52 3.05 -64.69 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 1.06 Total: 13.80 kcal Atomic # 6 Polarization: -48.79 SS G_CDS: 3.51 Total: -45.29 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -3.56 Total: -86.94 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 2.05 Total: 53.74 kcal Total: -67.74 3.05 -64.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207627075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.947 kcal (2) G-P(sol) polarization free energy of solvation -67.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds