Wall clock time and date at job start Thu Apr 9 2020 12:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32675 * 1 3 3 Cl 1.73607 * 119.99913 * 2 1 4 4 C 1.47894 * 120.00488 * 179.97438 * 2 1 3 5 5 C 1.39904 * 120.01882 * 289.73018 * 4 2 1 6 6 C 1.50704 * 119.81618 * 359.97438 * 5 4 2 7 7 C 1.38343 * 120.36101 * 179.73786 * 5 4 2 8 8 C 1.37739 * 120.39950 * 0.50917 * 7 5 4 9 9 C 1.50702 * 119.98853 * 179.74576 * 8 7 5 10 10 C 1.40769 * 120.02814 * 359.76901 * 8 7 5 11 11 C 1.41427 * 120.17966 * 179.97438 * 10 8 7 12 12 H 1.08003 * 120.00357 * 305.70681 * 11 10 8 13 13 C 1.39926 * 120.00170 * 125.70221 * 11 10 8 14 14 N 1.30835 * 120.00249 * 161.53109 * 13 11 10 15 15 Si 1.86800 * 120.00005 * 341.53856 * 13 11 10 16 16 H 1.48499 * 109.47453 * 94.32386 * 15 13 11 17 17 H 1.48503 * 109.47443 * 214.32321 * 15 13 11 18 18 H 1.48501 * 109.47126 * 334.32266 * 15 13 11 19 19 C 1.38914 * 120.02072 * 109.99988 * 4 2 1 20 20 C 1.50700 * 120.19834 * 0.02661 * 19 4 2 21 21 H 1.07995 * 120.00360 * 0.02562 * 1 2 3 22 22 H 1.08004 * 119.99531 * 179.72761 * 1 2 3 23 23 H 1.09002 * 109.47044 * 90.00623 * 6 5 4 24 24 H 1.09001 * 109.46656 * 209.99990 * 6 5 4 25 25 H 1.08999 * 109.47424 * 330.00103 * 6 5 4 26 26 H 1.07994 * 119.80151 * 180.23934 * 7 5 4 27 27 H 1.09002 * 109.46882 * 273.37547 * 9 8 7 28 28 H 1.08996 * 109.47101 * 33.36691 * 9 8 7 29 29 H 1.08995 * 109.47377 * 153.37210 * 9 8 7 30 30 H 0.96997 * 120.00017 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.47149 * 93.44539 * 20 19 4 32 32 H 1.09002 * 109.47668 * 213.45025 * 20 19 4 33 33 H 1.09001 * 109.47131 * 333.44523 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3267 0.0000 0.0000 3 17 2.1948 1.5035 0.0000 4 6 2.0663 -1.2807 0.0006 5 6 2.0622 -2.0908 1.1412 6 6 1.3031 -1.6542 2.3677 7 6 2.7471 -3.2928 1.1477 8 6 3.4494 -3.7008 0.0352 9 6 4.1970 -5.0092 0.0544 10 6 3.4696 -2.8959 -1.1195 11 6 4.1901 -3.3115 -2.2633 12 1 5.2360 -3.5676 -2.1792 13 6 3.5480 -3.3910 -3.5040 14 7 4.2537 -3.4165 -4.6054 15 14 1.6832 -3.4606 -3.5878 16 1 1.1448 -2.0899 -3.7792 17 1 1.2705 -4.3181 -4.7277 18 1 1.1517 -4.0290 -2.3230 19 6 2.7701 -1.6774 -1.1295 20 6 2.7837 -0.8058 -2.3588 21 1 -0.5400 0.9352 -0.0004 22 1 -0.5399 -0.9354 -0.0044 23 1 0.2821 -2.0326 2.3169 24 1 1.7930 -2.0489 3.2578 25 1 1.2851 -0.5654 2.4154 26 1 2.7347 -3.9129 2.0317 27 1 5.1939 -4.8520 0.4662 28 1 3.6577 -5.7268 0.6727 29 1 4.2802 -5.3951 -0.9615 30 1 3.8086 -3.4713 -5.4654 31 1 3.6577 -0.1550 -2.3331 32 1 2.8241 -1.4335 -3.2490 33 1 1.8790 -0.1983 -2.3834 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001670368.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:29 Heat of formation + Delta-G solvation = 16.203905 kcal Electronic energy + Delta-G solvation = -16412.843870 eV Core-core repulsion = 13849.993923 eV Total energy + Delta-G solvation = -2562.849947 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.84609 -36.30441 -34.39301 -33.45794 -31.95141 -30.76898 -27.79227 -26.98298 -25.73842 -23.47336 -20.96405 -19.65099 -18.72976 -17.31201 -15.86464 -14.94114 -14.65778 -14.09782 -13.53795 -13.20674 -12.84432 -12.72216 -12.58464 -12.42453 -12.16798 -12.01302 -11.57993 -11.54993 -11.37228 -11.17311 -10.88841 -10.63641 -10.25535 -10.17216 -9.99848 -9.82578 -9.53817 -8.95706 -8.75404 -7.49668 -7.21018 -6.69610 -4.38277 1.89348 2.34037 2.48232 2.92384 3.15817 3.20334 3.32133 4.06912 4.45653 5.08897 5.18113 5.66902 5.74467 5.87641 5.99027 6.08956 6.10030 6.23084 6.32610 6.41633 6.49202 6.51668 6.54301 6.61966 6.69160 6.81795 6.83958 7.03390 7.32796 7.37780 7.50676 7.55405 7.88472 8.04258 8.46260 8.69400 8.94922 10.33654 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.010659 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.454876 B = 2626.294920 C = 3317.452878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.009 3.991 3 Cl -0.098 7.098 4 C -0.064 4.064 5 C -0.147 4.147 6 C -0.095 4.095 7 C -0.106 4.106 8 C -0.137 4.137 9 C -0.094 4.094 10 C 0.089 3.911 11 C -0.485 4.485 12 H 0.092 0.908 13 C 0.097 3.903 14 N -0.831 5.831 15 Si 0.875 3.125 16 H -0.259 1.259 17 H -0.286 1.286 18 H -0.252 1.252 19 C -0.117 4.117 20 C -0.105 4.105 21 H 0.107 0.893 22 H 0.120 0.880 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.278 0.722 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.247 3.572 7.323 10.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 Cl -0.069 7.069 4 C -0.064 4.064 5 C -0.148 4.148 6 C -0.152 4.152 7 C -0.124 4.124 8 C -0.138 4.138 9 C -0.150 4.150 10 C 0.087 3.913 11 C -0.516 4.516 12 H 0.110 0.890 13 C -0.117 4.117 14 N -0.458 5.458 15 Si 0.700 3.300 16 H -0.184 1.184 17 H -0.213 1.213 18 H -0.175 1.175 19 C -0.118 4.118 20 C -0.161 4.161 21 H 0.126 0.874 22 H 0.138 0.862 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.119 0.881 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.119 3.679 7.047 10.032 hybrid contribution -0.758 0.117 -0.192 0.790 sum -6.877 3.796 6.855 10.425 Atomic orbital electron populations 1.24210 0.93334 1.02810 1.02661 1.21919 0.92583 0.85924 1.01257 1.98343 1.78793 1.33057 1.96721 1.18158 1.01431 0.91855 0.94969 1.19342 1.04335 0.96626 0.94453 1.20565 0.98715 1.00542 0.95364 1.20398 0.99029 0.95649 0.97310 1.20327 1.01513 0.96529 0.95478 1.20524 0.97959 0.94021 1.02534 1.17491 0.90831 0.89570 0.93398 1.18943 0.98784 1.43936 0.89954 0.89044 1.25669 0.99534 0.91736 0.94796 1.69711 1.38140 1.39286 0.98686 0.87089 0.84387 0.79310 0.79228 1.18416 1.21282 1.17534 1.20322 1.01394 0.95661 0.94397 1.20878 0.99955 0.98390 0.96864 0.87446 0.86249 0.92926 0.92861 0.92744 0.88119 0.93210 0.93944 0.90741 0.91130 0.92131 0.90646 0.94004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.94 13.50 28.84 0.39 -2.55 16 2 C 0.01 0.16 3.01 -37.52 -0.11 0.05 16 3 Cl -0.10 -1.64 28.68 -51.86 -1.49 -3.13 16 4 C -0.06 -1.32 5.37 -105.07 -0.56 -1.88 16 5 C -0.15 -2.87 5.93 -103.96 -0.62 -3.48 16 6 C -0.10 -1.48 9.18 36.01 0.33 -1.15 16 7 C -0.11 -2.12 9.32 -39.73 -0.37 -2.49 16 8 C -0.14 -3.05 5.94 -103.85 -0.62 -3.67 16 9 C -0.09 -1.83 9.66 36.01 0.35 -1.49 16 10 C 0.09 2.18 4.32 -106.87 -0.46 1.72 16 11 C -0.49 -12.77 7.42 -37.74 -0.28 -13.05 16 12 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 13 C 0.10 2.52 4.09 -17.34 -0.07 2.45 16 14 N -0.83 -22.33 13.93 55.55 0.77 -21.56 16 15 Si 0.88 20.52 24.60 -169.99 -4.18 16.34 16 16 H -0.26 -5.87 6.23 56.52 0.35 -5.51 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.25 -6.07 7.11 56.52 0.40 -5.66 16 19 C -0.12 -2.70 4.82 -103.52 -0.50 -3.20 16 20 C -0.10 -2.35 7.66 36.01 0.28 -2.07 16 21 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 22 H 0.12 1.78 8.05 -52.48 -0.42 1.35 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 25 H 0.05 0.83 6.99 -51.93 -0.36 0.46 16 26 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.72 8.11 -51.93 -0.42 0.29 16 29 H 0.07 1.56 6.99 -51.93 -0.36 1.19 16 30 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.08 1.81 3.05 -51.93 -0.16 1.65 16 33 H 0.04 0.86 6.94 -51.93 -0.36 0.50 16 LS Contribution 283.01 15.07 4.26 4.26 Total: -1.00 -26.60 283.01 -7.11 -33.71 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.23 Total: 1.19 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: -2.25 Total: -30.81 kcal Atomic # 7 Polarization: -22.33 SS G_CDS: 0.77 Total: -21.56 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.18 Total: 16.34 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -1.49 Total: -3.13 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.60 -7.11 -33.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001670368.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.915 kcal (2) G-P(sol) polarization free energy of solvation -26.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds