Wall clock time and date at job start Thu Apr 9 2020 12:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.51271 * 120.89128 * 2 1 4 4 C 1.52683 * 108.49030 * 232.38354 * 3 2 1 5 5 H 1.09002 * 108.53527 * 185.81753 * 4 3 2 6 6 C 1.52841 * 110.36722 * 66.03059 * 4 3 2 7 7 C 1.53019 * 109.53088 * 298.58801 * 6 4 3 8 8 N 1.46891 * 109.50313 * 179.56656 * 7 6 4 9 9 C 1.46904 * 111.00106 * 204.99677 * 8 7 6 10 10 C 1.53004 * 109.47043 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.46670 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00069 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99563 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00260 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99790 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47140 * 59.99515 * 15 13 11 17 17 H 1.48494 * 109.47198 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46933 * 299.99787 * 15 13 11 19 19 C 1.51928 * 109.01152 * 299.52409 * 7 6 4 20 20 C 1.52845 * 110.13017 * 60.80862 * 19 7 6 21 21 H 1.08999 * 109.32648 * 180.77165 * 20 19 7 22 22 C 1.51270 * 120.88875 * 180.27574 * 2 1 3 23 23 C 1.52815 * 109.30951 * 304.98586 * 4 3 2 24 24 H 1.08002 * 120.00352 * 179.72685 * 1 2 3 25 25 H 1.08005 * 119.99880 * 359.44740 * 1 2 3 26 26 H 1.08994 * 109.61644 * 351.35137 * 3 2 1 27 27 H 1.09001 * 109.62080 * 111.88745 * 3 2 1 28 28 H 1.09005 * 109.46330 * 58.60201 * 6 4 3 29 29 H 1.08997 * 109.46310 * 178.56791 * 6 4 3 30 30 H 1.08999 * 109.50158 * 59.48616 * 7 6 4 31 31 H 1.00905 * 111.00082 * 328.94948 * 8 7 6 32 32 H 1.08997 * 109.46832 * 299.99941 * 9 8 7 33 33 H 1.09001 * 109.46788 * 60.00177 * 9 8 7 34 34 H 1.08991 * 109.47516 * 300.00308 * 10 9 8 35 35 H 1.09001 * 109.46820 * 60.00642 * 10 9 8 36 36 H 0.96992 * 120.00103 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.58802 * 300.34268 * 19 7 6 38 38 H 1.09004 * 108.74876 * 180.74783 * 19 7 6 39 39 H 1.09003 * 109.62158 * 248.08665 * 22 2 1 40 40 H 1.08993 * 109.62133 * 8.45743 * 22 2 1 41 41 H 1.08997 * 109.33621 * 302.97229 * 23 4 3 42 42 H 1.09003 * 109.32882 * 183.48986 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0866 1.2981 0.0000 4 6 3.0936 1.2599 -1.1470 5 1 3.7232 2.1476 -1.0851 6 6 2.3678 1.2474 -2.4920 7 6 1.4962 -0.0063 -2.5913 8 7 0.7909 -0.0124 -3.8798 9 6 -0.4434 -0.8052 -3.8006 10 6 -1.1488 -0.7875 -5.1582 11 6 -2.4147 -1.6013 -5.0771 12 1 -2.6888 -2.0825 -4.1499 13 6 -3.2228 -1.7313 -6.1866 14 7 -2.8893 -1.1449 -7.3155 15 14 -4.7922 -2.7395 -6.0859 16 1 -5.6890 -2.1577 -5.0550 17 1 -5.4769 -2.7224 -7.4035 18 1 -4.4587 -4.1392 -5.7189 19 6 2.3834 -1.2353 -2.4887 20 6 3.1102 -1.2486 -1.1442 21 1 3.7527 -2.1275 -1.0901 22 6 2.0865 -1.2981 -0.0062 23 6 3.9648 0.0116 -1.0131 24 1 -0.5401 -0.9353 -0.0045 25 1 -0.5400 0.9353 0.0090 26 1 1.4034 2.1332 -0.1544 27 1 2.6029 1.4157 0.9527 28 1 1.7391 2.1342 -2.5736 29 1 3.0997 1.2458 -3.2997 30 1 0.7697 -0.0097 -1.7787 31 1 0.5973 0.9279 -4.1906 32 1 -0.1986 -1.8326 -3.5313 33 1 -1.1015 -0.3781 -3.0440 34 1 -1.3936 0.2400 -5.4272 35 1 -0.4908 -1.2143 -5.9152 36 1 -3.4580 -1.2361 -8.0959 37 1 3.1149 -1.2265 -3.2968 38 1 1.7600 -2.1255 -2.5733 39 1 2.6033 -1.4201 0.9457 40 1 1.4030 -2.1328 -0.1613 41 1 4.4543 0.0158 -0.0392 42 1 4.7238 0.0157 -1.7955 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257888052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:05 Heat of formation + Delta-G solvation = -22.272713 kcal Electronic energy + Delta-G solvation = -19039.303883 eV Core-core repulsion = 16403.461151 eV Total energy + Delta-G solvation = -2635.842732 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.75529 -37.25111 -35.19949 -34.42330 -33.65529 -32.14669 -29.28000 -27.20613 -27.08170 -25.92175 -22.83156 -22.57237 -21.87810 -20.19191 -18.85706 -18.42819 -16.80738 -16.41099 -16.34797 -15.70342 -15.42247 -15.30886 -14.85171 -14.82467 -14.47257 -13.96594 -13.79155 -13.65358 -13.29935 -13.09016 -12.87671 -12.84126 -12.50538 -12.37985 -12.10749 -11.92053 -11.80024 -11.71423 -11.57316 -11.39647 -11.33557 -10.85915 -10.67992 -10.57658 -9.77258 -8.81452 -8.21399 -6.33465 1.34142 1.38398 1.42174 1.50221 2.39430 3.11500 3.34928 3.64620 3.68972 4.03152 4.14542 4.16093 4.25762 4.31500 4.37124 4.50924 4.55382 4.63387 4.64944 4.67949 4.81183 4.90582 4.94943 4.99248 5.02795 5.04832 5.08788 5.11115 5.21966 5.25687 5.37567 5.42024 5.45487 5.49418 5.55131 5.67734 5.77868 5.79626 5.95005 6.16899 6.38349 6.63634 6.83493 7.35757 8.90739 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.034882 B = 0.004831 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.507942 B = 5794.951910 C = 6032.261374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.093 4.093 3 C -0.083 4.083 4 C -0.076 4.076 5 H 0.091 0.909 6 C -0.109 4.109 7 C 0.041 3.959 8 N -0.698 5.698 9 C 0.094 3.906 10 C 0.033 3.967 11 C -0.546 4.546 12 H 0.058 0.942 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.967 3.033 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.267 1.267 19 C -0.098 4.098 20 C -0.078 4.078 21 H 0.084 0.916 22 C -0.085 4.085 23 C -0.105 4.105 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.333 0.667 32 H 0.048 0.952 33 H 0.012 0.988 34 H -0.010 1.010 35 H -0.009 1.009 36 H 0.264 0.736 37 H 0.053 0.947 38 H 0.033 0.967 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.811 4.039 17.470 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.093 4.093 3 C -0.120 4.120 4 C -0.095 4.095 5 H 0.109 0.891 6 C -0.147 4.147 7 C -0.067 4.067 8 N -0.329 5.329 9 C -0.035 4.035 10 C -0.004 4.004 11 C -0.585 4.585 12 H 0.076 0.924 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.791 3.209 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.192 1.192 19 C -0.136 4.136 20 C -0.097 4.097 21 H 0.102 0.898 22 C -0.122 4.122 23 C -0.142 4.142 24 H 0.106 0.894 25 H 0.115 0.885 26 H 0.084 0.916 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.151 0.849 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.008 0.992 35 H 0.010 0.990 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.141 3.547 17.029 22.417 hybrid contribution -1.749 0.028 -0.291 1.774 sum 12.391 3.576 16.737 21.130 Atomic orbital electron populations 1.23573 0.95720 1.01771 1.05565 1.21999 0.94764 0.97084 0.95448 1.20879 0.97757 0.93824 0.99528 1.20911 0.96350 0.99366 0.92867 0.89060 1.21652 0.98691 0.96166 0.98227 1.22360 0.97048 0.95959 0.91351 1.60495 1.24124 1.17859 1.30414 1.21668 0.88680 0.96437 0.96731 1.18913 0.93846 0.94960 0.92705 1.21569 1.07657 1.32016 0.97225 0.92384 1.25984 1.01889 0.96929 0.94826 1.70103 1.39810 1.45147 1.02108 0.85471 0.78658 0.79176 0.77561 1.19080 1.20556 1.19164 1.21274 0.97961 0.97001 0.97398 1.21039 0.96247 0.99439 0.92965 0.89812 1.20923 0.97569 0.94170 0.99522 1.21461 0.97076 0.92794 1.02897 0.89392 0.88504 0.91615 0.88545 0.92619 0.91942 0.89455 0.84920 0.93360 0.96977 0.99205 0.99047 0.92684 0.92813 0.94769 0.88719 0.92477 0.89784 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -5.68 12.02 67.79 0.81 -4.87 16 2 C -0.09 -2.00 3.17 -16.12 -0.05 -2.05 16 3 C -0.08 -1.44 5.50 29.92 0.16 -1.28 16 4 C -0.08 -1.34 3.07 -11.01 -0.03 -1.37 16 5 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 6 C -0.11 -2.64 4.73 30.55 0.14 -2.49 16 7 C 0.04 1.23 2.15 44.57 0.10 1.33 16 8 N -0.70 -26.96 6.31 -493.38 -3.11 -30.07 16 9 C 0.09 4.28 5.42 86.30 0.47 4.75 16 10 C 0.03 1.87 5.23 29.85 0.16 2.03 16 11 C -0.55 -32.51 9.11 25.60 0.23 -32.28 16 12 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 13 C 0.00 0.10 5.46 84.66 0.46 0.56 16 14 N -0.93 -58.44 13.29 21.45 0.28 -58.15 16 15 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 19 C -0.10 -2.80 4.85 30.19 0.15 -2.65 16 20 C -0.08 -1.58 3.15 -10.86 -0.03 -1.62 16 21 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 22 C -0.08 -1.69 5.50 30.08 0.17 -1.52 16 23 C -0.10 -1.72 5.09 30.47 0.16 -1.57 16 24 H 0.09 2.33 7.92 -2.91 -0.02 2.30 16 25 H 0.10 2.34 7.92 -2.91 -0.02 2.31 16 26 H 0.07 1.18 7.89 -2.39 -0.02 1.16 16 27 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.34 8.12 -2.38 -0.02 1.32 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 2.67 2.65 -2.39 -0.01 2.66 16 31 H 0.33 12.62 8.34 -89.69 -0.75 11.87 16 32 H 0.05 2.24 7.42 -2.39 -0.02 2.22 16 33 H 0.01 0.55 8.06 -2.39 -0.02 0.53 16 34 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 36 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.03 1.12 7.42 -2.38 -0.02 1.10 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 1.28 7.89 -2.39 -0.02 1.26 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -66.53 315.99 2.31 -64.22 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.22 Total: 19.65 kcal Atomic # 6 Polarization: -45.91 SS G_CDS: 2.89 Total: -43.03 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -2.83 Total: -88.22 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -66.53 2.31 -64.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257888052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.951 kcal (2) G-P(sol) polarization free energy of solvation -66.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds