Wall clock time and date at job start Thu Apr 9 2020 12:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86802 * 119.99744 * 2 1 4 4 H 1.48496 * 109.47043 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47196 * 300.00515 * 3 2 1 6 6 H 1.48504 * 109.46983 * 60.00458 * 3 2 1 7 7 C 1.38987 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99784 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99742 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00020 * 179.97438 * 9 7 2 11 11 O 1.21644 * 119.99873 * 359.97438 * 10 9 7 12 12 C 1.47324 * 120.00155 * 179.97438 * 10 9 7 13 13 N 1.36073 * 126.45827 * 0.11979 * 12 10 9 14 14 C 1.29936 * 108.48569 * 180.26598 * 13 12 10 15 15 O 1.34049 * 109.26467 * 359.77001 * 14 13 12 16 16 C 1.34279 * 108.22648 * 359.97438 * 15 14 13 17 17 C 1.50706 * 126.52811 * 179.97438 * 16 15 14 18 18 F 1.39902 * 109.47169 * 270.02281 * 17 16 15 19 19 F 1.39894 * 109.47035 * 30.02683 * 17 16 15 20 20 F 1.39897 * 109.46606 * 150.02497 * 17 16 15 21 21 H 0.96998 * 120.00426 * 359.97438 * 1 2 3 22 22 H 0.96996 * 120.00313 * 359.97438 * 9 7 2 23 23 H 1.07999 * 125.36745 * 179.72741 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7079 1.3465 -0.0006 5 1 1.8891 2.3966 -1.2125 6 1 1.8892 2.3964 1.2126 7 6 2.0090 -1.2036 -0.0005 8 1 3.0890 -1.2035 -0.0010 9 7 1.3244 -2.3896 -0.0016 10 6 1.9983 -3.5568 -0.0026 11 8 3.2147 -3.5567 -0.0031 12 6 1.2617 -4.8327 -0.0032 13 7 -0.0904 -4.9858 -0.0051 14 6 -0.3611 -6.2566 0.0007 15 8 0.7844 -6.9528 0.0014 16 6 1.8057 -6.0811 -0.0049 17 6 3.2742 -6.4198 -0.0060 18 9 3.7311 -6.5187 1.3126 19 9 3.4707 -7.6405 -0.6605 20 9 3.9841 -5.4145 -0.6713 21 1 -0.4851 0.8400 0.0004 22 1 0.3544 -2.3896 -0.0016 23 1 -1.3527 -6.6845 0.0051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261670787.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:14 Heat of formation + Delta-G solvation = -179.531452 kcal Electronic energy + Delta-G solvation = -18392.787833 eV Core-core repulsion = 14599.510821 eV Total energy + Delta-G solvation = -3793.277012 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.035 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -51.27233 -48.83921 -48.69369 -44.63921 -40.07931 -36.20927 -36.07118 -33.40763 -32.57464 -28.25441 -26.82581 -24.80841 -23.37346 -21.66588 -20.42359 -19.75134 -19.69464 -19.35528 -18.53680 -17.85622 -17.13455 -16.52813 -16.00850 -15.67320 -15.65744 -15.44379 -15.20414 -15.13170 -14.98126 -14.85590 -14.50866 -13.82633 -13.55917 -13.02190 -12.59022 -12.54762 -12.10385 -12.01748 -11.63999 -10.72784 -10.60935 -10.18743 -8.63039 -6.07422 -0.47003 0.65442 0.98814 1.42117 1.43258 1.57728 1.82226 2.20592 2.23298 2.61901 2.67343 3.05253 3.11208 3.18095 3.29523 3.79919 4.15932 4.32095 4.99956 5.29050 5.78628 6.16565 6.41256 6.91391 7.29891 7.84726 8.53442 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.034007 B = 0.007004 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.155617 B = 3996.692264 C = 4645.347168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.007 4.007 3 Si 1.006 2.994 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.334 4.334 8 H 0.094 0.906 9 N -0.524 5.524 10 C 0.471 3.529 11 O -0.604 6.604 12 C 0.035 3.965 13 N -0.508 5.508 14 C 0.250 3.750 15 O -0.172 6.172 16 C -0.127 4.127 17 C 0.571 3.429 18 F -0.167 7.167 19 F -0.164 7.164 20 F -0.140 7.140 21 H 0.286 0.714 22 H 0.402 0.598 23 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.420 -11.984 -0.085 12.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.210 4.210 3 Si 0.827 3.173 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.464 4.464 8 H 0.112 0.888 9 N -0.156 5.156 10 C 0.258 3.742 11 O -0.492 6.492 12 C -0.086 4.086 13 N -0.237 5.237 14 C 0.023 3.977 15 O -0.058 6.058 16 C -0.185 4.185 17 C 0.515 3.485 18 F -0.149 7.149 19 F -0.145 7.145 20 F -0.120 7.120 21 H 0.096 0.904 22 H 0.237 0.763 23 H 0.345 0.655 Dipole moment (debyes) X Y Z Total from point charges -2.194 -11.347 -0.090 11.558 hybrid contribution 0.315 0.177 0.019 0.362 sum -1.879 -11.171 -0.071 11.328 Atomic orbital electron populations 1.69706 1.07320 1.30335 1.46480 1.26360 0.96614 1.03129 0.94873 0.84693 0.78155 0.75720 0.78689 1.19176 1.19114 1.19102 1.20008 0.93489 0.83144 1.49737 0.88780 1.41866 1.10016 1.04475 1.59290 1.16860 0.86825 0.82611 0.87918 1.90715 1.12954 1.86454 1.59050 1.21859 0.90442 0.94186 1.02132 1.71001 1.11726 1.20770 1.20222 1.29895 0.91843 0.84229 0.91700 1.84340 1.14594 1.37230 1.69675 1.22726 0.89816 0.88980 1.16969 1.16364 0.82666 0.74698 0.74755 1.93232 1.89847 1.95828 1.35944 1.93226 1.95778 1.44380 1.81129 1.93432 1.78679 1.59697 1.80237 0.90401 0.76256 0.65459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.81 13.05 21.67 0.28 -47.53 14 2 C -0.01 -0.36 5.50 84.94 0.47 0.11 14 3 Si 1.01 41.29 29.55 68.60 2.03 43.32 14 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 14 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 14 6 H -0.27 -10.38 7.11 99.48 0.71 -9.67 14 7 C -0.33 -18.92 9.68 84.08 0.81 -18.11 14 8 H 0.09 5.56 7.15 -2.91 -0.02 5.54 14 9 N -0.52 -28.39 5.28 -310.06 -1.64 -30.03 14 10 C 0.47 24.42 7.71 86.63 0.67 25.09 14 11 O -0.60 -34.02 12.74 -4.17 -0.05 -34.07 14 12 C 0.04 1.48 6.96 40.40 0.28 1.76 14 13 N -0.51 -17.45 11.05 -305.17 -3.37 -20.82 14 14 C 0.25 5.36 13.19 130.52 1.72 7.08 14 15 O -0.17 -4.56 10.72 0.18 0.00 -4.56 14 16 C -0.13 -4.55 6.75 25.21 0.17 -4.38 14 17 C 0.57 20.54 3.34 71.24 0.24 20.78 14 18 F -0.17 -5.98 17.30 44.97 0.78 -5.21 14 19 F -0.16 -5.02 17.30 44.97 0.78 -4.24 14 20 F -0.14 -5.96 13.51 44.97 0.61 -5.36 14 21 H 0.29 13.92 8.31 -92.71 -0.77 13.15 14 22 H 0.40 21.41 7.62 -92.71 -0.71 20.70 14 23 H 0.33 1.68 8.06 -2.91 -0.02 1.66 14 Total: -1.00 -69.20 236.09 4.37 -64.83 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.60 Total: 11.34 kcal Atomic # 6 Polarization: 27.96 SS G_CDS: 4.36 Total: 32.32 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -4.73 Total: -98.38 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.05 Total: -38.63 kcal Atomic # 9 Polarization: -16.97 SS G_CDS: 2.16 Total: -14.80 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -69.20 4.37 -64.83 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261670787.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.700 kcal (2) G-P(sol) polarization free energy of solvation -69.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds